├── .github ├── ISSUE_TEMPLATE │ ├── meta-checklist.md │ ├── recipe_template.md │ └── recipe_template.yml └── workflows │ ├── build-migrating.yml │ └── record_repo_traffic.yml ├── .gitignore ├── CITATION.cff ├── Dockerfile ├── README.md ├── _bibliography └── bibliography-faircookbook.bib ├── _config.yml ├── _content_not_in_toc ├── isa-ro-zenodo-deposition.md ├── l1.md ├── l2.md ├── levelfour.md ├── levelthree.md └── recipes │ ├── NOT_IN_TOC-cmmi.md │ ├── accessibility │ └── anonymizing-patient-data.md │ ├── assessing-fairness.md │ ├── assessing-fairness │ ├── assets │ │ ├── fair-eval-img1.png │ │ ├── fair-eval-img2.png │ │ ├── fair-eval-img3.png │ │ ├── fair-eval-img4.png │ │ ├── fair-eval-img5.png │ │ ├── fair-eval-img6.png │ │ ├── fair-eval-img7.png │ │ ├── how-to-create │ │ │ ├── gdoc-reciple-template-DocstoMd0.png │ │ │ ├── gdoc-reciple-template-DocstoMd1.png │ │ │ ├── gdoc-reciple-template-DocstoMd2.png │ │ │ ├── gdoc-reciple-template-DocstoMd3.png │ │ │ ├── gdoc-reciple-template-DocstoMd4.png │ │ │ ├── gdoc-reciple-template.png │ │ │ ├── github-issue.png │ │ │ ├── github-repo-invites.png │ │ │ ├── gitlab-markdown-tutorial.png │ │ │ ├── hackmd-account.png │ │ │ ├── hackmd-github-integration.png │ │ │ ├── hackmd-ui.png │ │ │ └── image (1).png │ │ └── seo-google-structured-data-tool.png │ ├── automatic-fair-assessment.md │ ├── cmmi │ │ ├── Data FAIRness Assessment.xlsx │ │ ├── Data-Management-Maturity-Model.md │ │ ├── Data-Usage-Areas.md │ │ ├── Datasets-Maturity-Model.md │ │ ├── FAIRPlus-Indicators.md │ │ ├── RDA-Indicators.md │ │ ├── evaluation-method.md │ │ ├── img │ │ │ ├── compliance-levels.PNG │ │ │ ├── fairness_level_area.PNG │ │ │ ├── fairness_level_indicator.PNG │ │ │ ├── indicator-detail.PNG │ │ │ ├── isa-structure.png │ │ │ ├── level-of-compliance.PNG │ │ │ └── manual-evaluation.PNG │ │ └── rda-evaluation.md │ ├── fair-assessment-fairevaluator.md │ ├── fair-assessment-fairshake.md │ ├── fair-indicators.md │ └── manual-fair-assessment.md │ ├── boilerplate │ ├── disclaimer.md │ ├── governance.md │ ├── license.md │ ├── project_information.md │ ├── roadmap.md │ └── technology_stack.md │ ├── introduction.md │ ├── introduction │ ├── FAIR-in-IMI-context.md │ ├── FAIR-principles.md │ ├── IMI-Data-Access-Request-Process.md │ ├── IMI-and-data-management-plans.md │ ├── IMI-data-access-request-overview.mmd │ ├── IMI-data-access-request-overview.png │ ├── brief-FAIR-principles.md │ ├── data-sharing-fig-2.mmd │ ├── data-sharing-fig-3.mmd │ ├── data-sharing-fig-4.mmd │ ├── data-sharing-fig-5.mmd │ ├── data-sharing-fig-6.mmd │ ├── data-sharing-fig-7.mmd │ ├── data-sharing-fig1.png │ ├── data-sharing-fig1.svg │ ├── data-sharing-fig2.svg │ ├── data-sharing-fig3.svg │ ├── data-sharing-fig4.svg │ ├── data-sharing-fig5.svg │ ├── data-sharing-fig6.svg │ ├── data-sharing-fig7.svg │ ├── data-sharing-figure-1.mmd │ ├── data-sharing-models.md │ └── what-is-IMI.md │ └── reusability │ ├── NOT_IN_TOC-license-selection.md │ └── community-standards.md ├── _ext ├── authors_fairplus.py ├── fairsharing_panel.py ├── figure_fairplus.py ├── generate-cff.py ├── global_variables_fairplus.py ├── license_fairplus.py ├── panels_fairplus.py └── rdmkit_panel.py ├── _inject_after_build ├── google2fc5973b72ac002c.html ├── intro.html └── recipes │ ├── etox_raw │ └── FAIRplus_Recipe_Ontology_mapping_the_eTox_dataset_scenario.html │ ├── nd4bb_raw │ └── FAIRification_CookBook_Recipe1_V02.html │ ├── oncotrack_raw │ └── rawRecipe-oncotrack.html │ └── resolute_raw │ └── rawRecipe_resolute.html ├── _static ├── cookbook-logo-small-old.png ├── cookbook-logo-small.png ├── css │ ├── animate.min.css │ ├── custom.css │ ├── materialdesignicons.min.css │ ├── search-wizard.css │ ├── search.css │ └── vuetify.min.css ├── faircookbook_FAIRsharing_mapping.yml ├── faircookbook_rdmkit_mapping.yml ├── images │ ├── C-3PO_droid.png │ ├── book.png │ ├── fairplus-mini.png │ ├── homepage.png │ ├── logo │ │ ├── Elixir │ │ │ ├── ELIXIR-BE.svg │ │ │ ├── ELIXIR-CH.svg │ │ │ ├── ELIXIR-CZ.svg │ │ │ ├── ELIXIR-DE.svg │ │ │ ├── ELIXIR-DK.svg │ │ │ ├── ELIXIR-EE.svg │ │ │ ├── ELIXIR-ES.svg │ │ │ ├── ELIXIR-FI.svg │ │ │ ├── ELIXIR-FR.svg │ │ │ ├── ELIXIR-GR.svg │ │ │ ├── ELIXIR-HU.svg │ │ │ ├── ELIXIR-IE.svg │ │ │ ├── ELIXIR-IL.svg │ │ │ ├── ELIXIR-IT.svg │ │ │ ├── ELIXIR-LU.svg │ │ │ ├── ELIXIR-NL.svg │ │ │ ├── ELIXIR-NO.svg │ │ │ ├── ELIXIR-PT.svg │ │ │ ├── ELIXIR-SE.svg │ │ │ ├── ELIXIR-SI.svg │ │ │ ├── ELIXIR-UK.svg │ │ │ ├── ELIXIR.png │ │ │ └── embl.png │ │ ├── FAIR-Toolkit-logo.png │ │ ├── RDMkit_logo.svg │ │ ├── RDMkit_logo_inverted.svg │ │ ├── TTW.jpeg │ │ ├── TTW.svg │ │ ├── by.svg │ │ ├── cc-by-4.svg │ │ ├── cc.svg │ │ ├── cookbook-logo-small.png │ │ ├── download.svg │ │ ├── efpia-logo-fairplus2.png │ │ ├── efpia-logo.png │ │ ├── eu-flag-recolored-fairplus.png │ │ ├── eu-flag.png │ │ ├── fairsharing-logo.png │ │ ├── fairsharing-logo.svg │ │ ├── favicon-old.ico │ │ ├── favicon.ico │ │ ├── imi-europe.png │ │ ├── imi-logo-fairplus-v1.png │ │ ├── imi-logo.png │ │ ├── jupyter-book-logo.png │ │ ├── jupyter.png │ │ ├── logo.png │ │ ├── logo.psd │ │ ├── pistoia_logo.png │ │ └── turing-way-logo.jpg │ └── userjourney.svg ├── js │ ├── mermaid.core.js │ ├── mermaid.js │ ├── mermaid.min.js │ ├── searchNodal.js │ └── vue.min.js ├── old_cookbook-logo-small.png ├── recipes.json └── sphinx-book-theme.scss ├── _templates ├── custom-toc.html ├── footer.html ├── home.html ├── layout.html ├── sbt-sidebar-footer.html ├── sbt-sidebar-nav.html ├── search-field.html ├── search-wizard.html ├── search.html ├── sidebar-search-bs.html ├── sidebar.html ├── timeline.html └── topbar │ ├── index.html │ ├── launchbuttons.html │ └── repobuttons.html ├── _toc.yml ├── content ├── home.md ├── recipes │ ├── accessibility.md │ ├── accessibility │ │ ├── aspera.md │ │ ├── aspera.md-figure1.mmd │ │ ├── aspera.md-figure1.svg │ │ └── sftp.md │ ├── afterword.md │ ├── afterword │ │ ├── code_of_conduct.md │ │ ├── contributing.md │ │ ├── fair-reflections.md │ │ ├── people.md │ │ └── the-turing-way.md │ ├── applied-examples.md │ ├── applied-examples │ │ ├── BIA_10_submission_portal.jpg │ │ ├── BIA_11_submission_author_role.jpg │ │ ├── BIA_12_dataset_author_role.jpg │ │ ├── BIA_13_submission_subsections.jpg │ │ ├── BIA_14_submission_image_aquisition.jpg │ │ ├── BIA_15_submission_add_components.jpg │ │ ├── BIA_16_submission_study_components.jpg │ │ ├── BIA_17_submission_study_component_associations.jpg │ │ ├── BIA_18_submission_download_file_list.jpg │ │ ├── BIA_19_mifa.jpg │ │ ├── BIA_1_BIA-entry.jpg │ │ ├── BIA_20_annotations.jpg │ │ ├── BIA_21_orcid_claiming.jpg │ │ ├── BIA_2_file-list.jpg │ │ ├── BIA_3_biostudies_registration.jpg │ │ ├── BIA_4_REMBI.jpg │ │ ├── BIA_5_study_component_illustration.jpg │ │ ├── BIA_6_study_components_example.jpg │ │ ├── BIA_7_submission_file-upload.jpg │ │ ├── BIA_8_new_submission.jpg │ │ ├── BIA_9_new_submission_bia_entry.jpg │ │ ├── BIA_submission.md │ │ ├── approach-cdisc.md │ │ ├── approach-cdisc.md-figure0.mmd │ │ ├── ehden-ohdsi.md │ │ ├── ehden-ohdsi.md-figure0.mmd │ │ ├── ehden-ohdsi.md-figure1.jpg │ │ ├── ehden-ohdsi.md-figure2.jpg │ │ ├── ehden-ohdsi.md-figure3.jpg │ │ ├── ehden-ohdsi.md-figure6.png │ │ ├── ehden-ohdsi.md-figure7.png │ │ ├── etox.md │ │ ├── etox.md-figure1.png │ │ ├── etox.md-figure2.png │ │ ├── eubopen-hcs-bioimage.md │ │ ├── fair-data-matrix-recipe.md │ │ ├── fair-data-matrix-recipe.md-figure1.mmd │ │ ├── fair-data-matrix │ │ │ ├── 0-rose-metabolites-Python-data-handling.ipynb │ │ │ ├── 1-rose-metabolites-Python-analysis.ipynb │ │ │ ├── 2-rose-metabolites-Python-RDF-querying-analysis.ipynb │ │ │ └── 3-rose-metabolites-R-analysis.ipynb │ │ ├── fair-workflows.md │ │ ├── fair-workflows.mmd │ │ ├── fair-workflows.png │ │ ├── nd4bb.md │ │ ├── nd4bb.md-figure1.png │ │ ├── nd4bb.md-figure2.jpg │ │ ├── nd4bb.md-figure3.jpg │ │ ├── nd4bb.md-figure4.png │ │ ├── nd4bb.md-figure5.jpg │ │ ├── nd4bb.md-figure6.png │ │ ├── nd4bb.md-figure7.png │ │ ├── oncotrack_raw │ │ │ ├── image_0.png │ │ │ ├── image_1.png │ │ │ ├── image_2.png │ │ │ ├── image_3.png │ │ │ ├── image_4.png │ │ │ ├── image_5.png │ │ │ ├── image_6.jpg │ │ │ └── rawRecipe-oncotrack.md │ │ ├── resolute_raw │ │ │ ├── resolute.md │ │ │ └── resolute.md-figure1.png │ │ ├── workflow-bco-cloud-tools.png │ │ ├── workflow-cwl-airflow.png │ │ ├── workflow-sb-biocompute-app.png │ │ ├── workflowhub-eu-1.png │ │ └── workflowhub-eu-2.png │ ├── assessing-fairness.md │ ├── assessing-fairness │ │ ├── assets │ │ │ ├── fair-eval-img1.png │ │ │ ├── fair-eval-img2.png │ │ │ ├── fair-eval-img3.png │ │ │ ├── fair-eval-img4.png │ │ │ ├── fair-eval-img5.png │ │ │ ├── fair-eval-img6.png │ │ │ ├── fair-eval-img7.png │ │ │ └── seo-google-structured-data-tool.png │ │ ├── fair-assessment-fairevaluator.md │ │ ├── fair-assessment-fairshake.md │ │ └── images │ │ │ ├── CFDE-logo.png │ │ │ ├── insignia-anatomy.png │ │ │ ├── ss1.png │ │ │ ├── ss10.png │ │ │ ├── ss11.png │ │ │ ├── ss12.png │ │ │ ├── ss13.png │ │ │ ├── ss14.png │ │ │ ├── ss15.png │ │ │ ├── ss16.png │ │ │ ├── ss17.png │ │ │ ├── ss18.png │ │ │ ├── ss19.png │ │ │ ├── ss2.png │ │ │ ├── ss20.png │ │ │ ├── ss21.png │ │ │ ├── ss22.png │ │ │ ├── ss23.png │ │ │ ├── ss24.png │ │ │ ├── ss25.png │ │ │ ├── ss26.png │ │ │ ├── ss27.png │ │ │ ├── ss3.png │ │ │ ├── ss4.png │ │ │ ├── ss5.png │ │ │ ├── ss6.png │ │ │ ├── ss7.png │ │ │ ├── ss8.png │ │ │ └── ss9.png │ ├── community.md │ ├── data-use-agreement-main.mmd │ ├── findability.md │ ├── findability │ │ ├── FAIR-Toolkit-logo.png │ │ ├── checksum-create.md │ │ ├── checksum-create.md-figure1.mmd │ │ ├── checksum-create.md-file_to_compare.txt │ │ ├── checksum-validate.md │ │ ├── checksum-validate.md-figure1.mmd │ │ ├── identifiers-fig1.mmd │ │ ├── identifiers-fig1.svg │ │ ├── identifiers-minid-fig1.mmd │ │ ├── identifiers-minids-fig1.mmd │ │ ├── identifiers-minids-fig1.png │ │ ├── identifiers-minids.md │ │ ├── identifiers.md │ │ ├── images │ │ │ ├── globus │ │ │ │ ├── globus-account-allow.png │ │ │ │ ├── globus-account-create.png │ │ │ │ ├── globus-account-login-success.png │ │ │ │ └── globus-account-login.png │ │ │ ├── identifiers-minids-fig1.svg │ │ │ ├── minid-mermaid.png │ │ │ ├── quickstatements.png │ │ │ ├── quickstatements2.png │ │ │ ├── scholia.png │ │ │ ├── seo-mermaid.png │ │ │ ├── ss1.png │ │ │ └── ss2.png │ │ ├── pistoia_logo.png │ │ ├── registeringDatasets.md │ │ ├── seo-mermaid.mmd │ │ ├── seo.md │ │ ├── seo │ │ │ ├── BioschemasGenerator.png │ │ │ ├── BioschemasGeneratorDataCatalogForm.png │ │ │ ├── BioschemasGeneratorDatasetForm.png │ │ │ ├── BioschemasGeneratorGeneForm.png │ │ │ ├── bioschemas-data-page.md │ │ │ ├── bioschemas-datacatalog.md │ │ │ ├── bioschemas-dataset.md │ │ │ ├── bs-data-mermaid.mmd │ │ │ ├── bs-data-mermaid.png │ │ │ ├── bs-datacatalog-mermaid.mmd │ │ │ ├── bs-datacatalog-mermaid.png │ │ │ ├── bs-dataset-mermaid.mmd │ │ │ └── bs-dataset-mermaid.png │ │ └── zenodo-deposition.md │ ├── help.md │ ├── help │ │ ├── fcb-recipe-via-git.mmd │ │ ├── fcb-recipe-via-git.svg │ │ ├── how-to-create-recipe-with-gdoc.md │ │ ├── how-to-create-recipe-with-git.md │ │ ├── how-to-create-recipe-with-hackmd.md │ │ ├── images │ │ │ └── C-3PO_droid.png │ │ ├── myst.md │ │ ├── prov-o-overview.svg │ │ ├── recipe-template.md │ │ └── tips-tricks.md │ ├── infrastructure.md │ ├── infrastructure │ │ ├── DataModelDiagram.png │ │ ├── chemical-identities.md │ │ ├── data-catalog-deployment.md │ │ ├── data-catalog.md │ │ ├── data-catalog.md-figure1.mmd │ │ ├── dats-model.md │ │ ├── fair-api.md │ │ ├── gupri.md │ │ ├── id-resolution.md │ │ ├── iupac-names.md │ │ ├── openrefine-nvt.md │ │ ├── service_deployment │ │ │ ├── service_deployment_CMMI_evaluation.csv │ │ │ ├── service_deployment_review.tsv │ │ │ └── service_deployment_userStory.txt │ │ ├── vocabularies.md │ │ └── vocabularies │ │ │ ├── Selecting_and_using_ontology_lookup_services.md │ │ │ ├── UC3_R13_local_ontology_services.md │ │ │ ├── ols-deploy.mmd │ │ │ ├── ols-deploy.svg │ │ │ ├── onto-services-figure1.mmd │ │ │ ├── onto-services-figure1.svg │ │ │ ├── onto-services-figure10.mmd │ │ │ ├── onto-services-figure10.svg │ │ │ ├── onto-services-figure2.mmd │ │ │ ├── onto-services-figure2.svg │ │ │ ├── onto-services-figure3.mmd │ │ │ ├── onto-services-figure3.svg │ │ │ ├── onto-services-figure4.mmd │ │ │ ├── onto-services-figure4.svg │ │ │ ├── onto-services-figure5.mmd │ │ │ ├── onto-services-figure5.svg │ │ │ ├── onto-services-figure6.mmd │ │ │ ├── onto-services-figure6.svg │ │ │ ├── onto-services-figure7.mmd │ │ │ ├── onto-services-figure7.svg │ │ │ ├── onto-services-figure8.mmd │ │ │ ├── onto-services-figure8.svg │ │ │ ├── onto-services-figure9.mmd │ │ │ ├── onto-services-figure9.svg │ │ │ └── technical-and-architectural-selection-criteria-of-ontology-lookup-services.md │ ├── interoperability.md │ ├── interoperability │ │ ├── ETL-tools-mermaid.mmd │ │ ├── ETL-tools-mermaid.png │ │ ├── ETL-tools.md │ │ ├── VCF-to-FHIR-conversion.md │ │ ├── bioactivity-figure1.mmd │ │ ├── bioactivity-figure2.mmd │ │ ├── bioactivity-profile.md │ │ ├── bridgedb-recipe.md │ │ ├── bridgedb-recipe.md-figure1.mmd │ │ ├── bridgedb-recipe.md-figure2.mmd │ │ ├── bridgedb │ │ │ ├── bridgedb-example.ipynb │ │ │ └── data │ │ │ │ ├── bridgedb_script.py │ │ │ │ ├── case1-example.tsv │ │ │ │ ├── case2-example.tsv │ │ │ │ └── identifier-mapping.Rmd │ │ ├── c4c-clinical-trials.md │ │ ├── c4c-clinical-trials.md-figure0.mmd │ │ ├── c4c-mermaid.png │ │ ├── c4c_mappings.xlsx │ │ ├── covid19-sample-metadata-profile-shex-use-case-mermaid.mmd │ │ ├── covid19-sample-metadata-profile-shex-use-case-mermaid.png │ │ ├── covid19-sample-metadata-profile-shex-use-case.md │ │ ├── creating-data-dictionary.md │ │ ├── creating-data-dictionary.md-figure1.mmd │ │ ├── creating-knowledge-graph-from-unstructured-text.md │ │ ├── creating-minimal-metadata-profiles-mermaid.mmd │ │ ├── creating-minimal-metadata-profiles-mermaid.png │ │ ├── creating-minimal-metadata-profiles.md │ │ ├── fastq-file-format-validators.md │ │ ├── fastq-validation.mmd │ │ ├── fastq-validation.png │ │ ├── from-proprietary-to-open-standard-mzml-exemplar.md │ │ ├── from-proprietary.mmd │ │ ├── from-proprietary.png │ │ ├── hca_library_amplification_ontology_json_schema.png │ │ ├── hca_sequencing_json_schema.png │ │ ├── identifier-mapping.md │ │ ├── identifier-mapping.md-figure1.mmd │ │ ├── introduction-terminologies-ontologies.md │ │ ├── nlp-ner-2-kg-figure.mmd │ │ ├── nlp-ner-2-kg-figure.svg │ │ ├── nlp2kg.mmd │ │ ├── nlp2kg │ │ │ └── creating-knowledge-graph-from-text.ipynb │ │ ├── onto-new-term.mmd │ │ ├── onto-new-term.png │ │ ├── ontology-align-oxo.mmd │ │ ├── ontology-align-oxo.mmd.svg │ │ ├── ontology-alignment-oxo.md │ │ ├── ontology-new-term-request-recipe.md │ │ ├── ontology-operations-mermaid.mmd │ │ ├── ontology-operations-mermaid.png │ │ ├── ontology-operations-tools.md │ │ ├── ontology-robot-recipe.md │ │ ├── ontology-robot-recipe.md-figure1.mmd │ │ ├── ontology-robot-recipe.md-figure1.mmd.png │ │ ├── ontology-robot-recipe.md-figure2.mmd │ │ ├── ontology-robot-recipe │ │ │ ├── ExternalStudiesKQ.xlsx │ │ │ ├── MSIO-robot-build-process.ipynb │ │ │ └── competency-questions.md │ │ ├── rdf-conversion.md │ │ ├── rdf-conversion.md-figure1.mmd │ │ ├── registering-swisslipids-identifiers.md │ │ ├── selecting-ontologies.md │ │ ├── selecting-ontologies.md-figure1.mmd │ │ ├── selecting-ontologies.md-figure1.mmd.svg │ │ ├── storing-text-data-in-KG-final-graph.png │ │ ├── transcriptomics-metadata.md │ │ ├── vcf2fhir-json-overview.mmd │ │ ├── vcf2fhir-json-overview.png │ │ └── vcf2fhir │ │ │ ├── FAIRcookbook-vcf2fhir.ipynb │ │ │ └── vcftests.vcf │ ├── introduction │ │ ├── FAIR-and-knowledge-graphs.md │ │ ├── FAIR-cookbook-audience.md │ │ ├── FAIRificationFramework.png │ │ ├── FAIRificationProcess.png │ │ ├── FAIRificationTemplate.png │ │ ├── FAIRificationWorkplanCare.png │ │ ├── FAIRplus-values.md │ │ ├── KG-types.mmd │ │ ├── brief-FAIR-principles.md │ │ ├── dpia-need-flowchart.mmd │ │ ├── dpia.md │ │ ├── fair-all.bib │ │ ├── fair-cro.md │ │ ├── fair.bib │ │ ├── fairification-process.md │ │ ├── fairplus-fairification-pathways.png │ │ ├── glossary-fair-terms.md │ │ ├── kg-typology.png │ │ ├── metadata-fair-figure.mmd │ │ ├── metadata-fair-figure.png │ │ ├── metadata-fair.md │ │ ├── prioritization-mermaid.mmd │ │ ├── prioritization-mermaid.png │ │ ├── priorization.md │ │ ├── public-kg-resource-integration.md │ │ └── training-datasets.md │ ├── maturity.md │ ├── maturity │ │ ├── create-a-simple-ISA-descriptor.ipynb │ │ ├── isa-api-programmatic-rebuild-of-BII-S-3.ipynb │ │ ├── isa-as-RO.ipynb │ │ ├── isa-json-conversion-to-rdf-linked-data.ipynb │ │ └── isa-maturity-progression.md │ ├── reusability.md │ └── reusability │ │ ├── 10.1007_978-3-030-31095-0_3.bib │ │ ├── ATI-licensing.md │ │ ├── ATI_licensing_data.md │ │ ├── ATI_licensing_software.md │ │ ├── broads-duos.png │ │ ├── dac-ega.png │ │ ├── data-usage-mermaid.mmd │ │ ├── data-usage-mermaid.png │ │ ├── data-use-agreement.mmd │ │ ├── duo-ols-view-1.png │ │ ├── duo-ols-view-2.png │ │ ├── expressing-data-use.md │ │ ├── images │ │ └── turing-way-logo.jpg │ │ ├── miappe.md │ │ ├── odrl-validation-app.png │ │ ├── plant-pheno-data-publication.md │ │ ├── prov-dm-overview.png │ │ ├── prov-o-overview.svg │ │ └── provenance.md └── search-wizard.md ├── images ├── 0TdXGl0.png ├── 1EepmN9.png ├── 1ahQLjy.png ├── 249GhMg.png ├── 2OZFcJa.png ├── 3J0vm4q.png ├── 3rXmOW0.png ├── 3uqMaT3.png ├── 5eQN9hw.png ├── 6AUdRLo.png ├── 6uXR3m3.png ├── 937iuPV.png ├── 9Bp91gX.png ├── A9LUMPs.png ├── AWOWTbr.png ├── B5UbkpF.png ├── BTs0GUS.png ├── Bccq6OD.png ├── DSMeval-img1.png ├── DSMeval-img2.png ├── DSMeval-img3.png ├── E2ok5ni.png ├── F7VV50d.png ├── FAIRCookbook-webinar.png ├── Ge8gsWL.png ├── HGT9sdu.png ├── JrDztCg.png ├── KMsANJL.png ├── Kt3d9eo.png ├── Lc7FcPs.png ├── LwMorlw.png ├── OYyz4dT.png ├── Pek2BoQ.png ├── R40RvpW.png ├── RR5GSgi.png ├── Ro92a7D.png ├── STjyFbT.png ├── Synthea-synthdata.png ├── THYPg4E.png ├── TYpr8jM.png ├── WmlqBjL.png ├── add_label.png ├── avzyAFZ.png ├── bi5WoIf.png ├── bioimage-excel.png ├── bt012cm.png ├── build_folder.png ├── caaqwFo.png ├── confirm_dataset_publication.png ├── create_private_url.png ├── data-catalog-md-figure1.png ├── data-use-agreement-main.png ├── dataset_landing_page.png ├── docker_cleanup.png ├── docker_success.png ├── dpia-need-flowchart.svg ├── dpia-process-overview.png ├── dpv_in_protege.png ├── fSxOjXe.png ├── fair-dsm-assess-report1.png ├── fair-dsm-assess-report2.png ├── fair-fellowship-program.png ├── fair-wizard.png ├── fill_in_metadata.png ├── frsBwqc.png ├── generic_metadata.png ├── global_dataset_management_scheme.png ├── globus-account-allow.png ├── globus-account-create.png ├── globus-account-login-success.png ├── globus-account-login.png ├── iqdjWqo.png ├── jOYK2ZM.jpg ├── k79IQUA.png ├── l1z8OgL.png ├── link_dataset.png ├── logos │ ├── CFDE-logo.png │ ├── TTW.jpeg │ ├── TTW.svg │ └── pistoia_logo.png ├── lwV1cPd.png ├── maturity_img.png ├── maturity_img_1.png ├── new_dataset.png ├── openrefine-wiki-reconci.png ├── openrefine.png ├── opentarget-aws.png ├── pcbi.1005968.g001.jpg ├── pharos-project.png ├── pheno_data_publication_fairification_objectives.png ├── private_url.png ├── publish_dataset.png ├── pykeen_datasets.png ├── rdf-align-karma.png ├── rdf-align-openrefine.png ├── rheX0ib.png ├── riskonto-protege-ontograf.png ├── save_linked_dataset.png ├── score_card_ref.png ├── ss1.png ├── ss2.png ├── ss3.png ├── ss4.png ├── ss5.png ├── start_submission_process.png ├── submit_new_dataset.png ├── the_PGP_repository.png ├── ty9rpXF.png ├── uhGZN5t.png ├── unpublished_dataset_private_url.png ├── update_labels.png ├── wikidata-sparql-celllines.jpg ├── wikidata-sparql.jpg ├── wikidraftworks.png ├── wyTn5aS.png ├── yI8TRNM.png ├── yummydata.png ├── z2rriQu.png ├── zSMLtMU.png └── zenodo.png ├── requirements.txt ├── 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