├── autodijk ├── find_closest_vertex.m ├── find_six_equidistant_points.m ├── generate_dijkstra_for_sphere.m └── kdtree │ ├── @kdtree │ ├── ._kdtree.m │ ├── ._kdtree.mexa64 │ ├── ._kdtree.mexglx │ ├── ._kdtree.mexw32 │ ├── ._kdtree_closestpoint.m │ ├── ._kdtree_closestpoint.mexa64 │ ├── ._kdtree_closestpoint.mexglx │ ├── ._kdtree_closestpoint.mexw32 │ ├── ._kdtree_range.m │ ├── ._kdtree_range.mexa64 │ ├── ._kdtree_range.mexglx │ ├── ._kdtree_range.mexw32 │ ├── kdtree.m │ ├── kdtree.mexa64 │ ├── kdtree.mexglx │ ├── kdtree.mexw32 │ ├── kdtree_closestpoint.m │ ├── kdtree_closestpoint.mexa64 │ ├── kdtree_closestpoint.mexglx │ ├── kdtree_closestpoint.mexw32 │ ├── kdtree_range.m │ ├── kdtree_range.mexa64 │ ├── kdtree_range.mexglx │ └── kdtree_range.mexw32 │ ├── Makefile │ ├── README.txt │ ├── src │ ├── ._kdtree.cpp │ ├── ._kdtree.h │ ├── ._kdtree_closestpoint.cpp │ ├── ._kdtree_create.cpp │ ├── ._kdtree_range.cpp │ ├── kdtree.cpp │ ├── kdtree.h │ ├── kdtree_closestpoint.cpp │ ├── kdtree_create.cpp │ └── kdtree_range.cpp │ └── winmake │ ├── ._kdtree │ ├── ._kdtree.sln │ ├── ._kdtree.suo │ ├── kdtree.sln │ ├── kdtree.suo │ └── kdtree │ ├── ._Debug │ ├── ._Release │ ├── ._kdtree.mk │ ├── ._kdtree.vcproj │ ├── kdtree.mk │ └── kdtree.vcproj ├── classes ├── @autodijk │ ├── .xdebug_mris_curvature_stats │ ├── autodijk.m │ ├── autodijk_process.m │ ├── colprintf.m │ ├── cost_save.m │ ├── csys_printf.m │ ├── dsh_exec.m │ ├── error_exit.m │ ├── internals_build.m │ ├── lprintf.m │ ├── polar_analyze.m │ ├── rprintf.m │ ├── run.m │ ├── set.m │ ├── subject_preprocess.m │ └── vprintf.m ├── @basac_process │ ├── ROI_findStatistically.m │ ├── ROI_medianFilter.m │ ├── ROI_volsMeasure.m │ ├── asladc_read.m │ ├── b0mask_read.m │ ├── basac_initialize.m │ ├── basac_process.m │ ├── binarize.m │ ├── c_print.m │ ├── command.log │ ├── correlate.m │ ├── correlation_report.m │ ├── cprint.m │ ├── csys_print.m │ ├── dicomHeader_read.m │ ├── display.m │ ├── error_exit.m │ ├── fdisplay.m │ ├── get.m │ ├── inputImages_read.m │ ├── method_template.m │ ├── outputDicom_write.m │ ├── run.m │ ├── scratch │ │ ├── filtROI.m │ │ └── statROI.m │ ├── set.m │ ├── tuple_print.m │ ├── vdisp.m │ └── vprintf.m ├── @curvature_analyze │ ├── .xdebug_mris_curvature_stats │ ├── annotation_parse.m │ ├── colprintf.m │ ├── csys_printf.m │ ├── curvature_analyze.m │ ├── error_exit.m │ ├── get.m │ ├── histograms_process.m │ ├── imprint.m │ ├── internals_build.m │ ├── lprintf.m │ ├── map_annotationsRead.m │ ├── map_centroidsAnalyze.m │ ├── map_centroidsPlot.m │ ├── map_centroidsPointSpread.m │ ├── map_centroidsProcess.m │ ├── map_curvaturesParcellate.m │ ├── map_curvaturesRead.m │ ├── map_fill.m │ ├── map_histogramsPlot.m │ ├── map_histogramsProcess.m │ ├── map_indexShow.m │ ├── map_indexSplit.m │ ├── map_process.m │ ├── map_processSubj.m │ ├── map_show.m │ ├── map_statsProcess.m │ ├── mapindex_annotationRead.m │ ├── mapindex_centroidsAnalyze.m │ ├── mapindex_centroidsPlot.m │ ├── mapindex_centroidsPointSpread.m │ ├── mapindex_centroidsProcess.m │ ├── mapindex_curvatureParcellate.m │ ├── mapindex_curvatureRead.m │ ├── mapindex_histogramPlot.m │ ├── mapindex_histogramProcess.m │ ├── mapindex_statsProcess.m │ ├── mapindex_valueSet.m │ ├── mapindex_valueShow.m │ ├── mapindex_workingDirGet.m │ ├── new_mapCore.m │ ├── new_mapCurvFunc.m │ ├── new_mapHemi.m │ ├── new_mapRegion.m │ ├── new_mapSubject.m │ ├── new_mapSurfaceType.m │ ├── run.m │ ├── scratch │ │ ├── ROI_findStatistically.m │ │ ├── ROI_medianFilter.m │ │ ├── ROI_volsMeasure.m │ │ ├── asladc_read.m │ │ ├── b0mask_read.m │ │ ├── basac_initialize.m │ │ ├── basac_process.m │ │ ├── binarize.m │ │ ├── c_print.m │ │ ├── command.log │ │ ├── correlate.m │ │ ├── correlation_report.m │ │ ├── cprint.m │ │ ├── csys_print.m │ │ ├── dicomHeader_read.m │ │ ├── display.m │ │ ├── error_exit.m │ │ ├── fdisplay.m │ │ ├── get.m │ │ ├── inputImages_read.m │ │ ├── method_template.m │ │ ├── outputDicom_write.m │ │ ├── run.m │ │ ├── set.m │ │ ├── statROI.m │ │ ├── tuple_print.m │ │ └── vdisp.m │ ├── set.m │ ├── subjects_preprocess.m │ ├── surfcurv_doHistogram.m │ └── vprintf.m ├── @dcm_anonymize │ ├── c_print.m │ ├── cprint.m │ ├── dcm_anonymize.m │ ├── dicomHeader_read.m │ ├── display.m │ ├── error_exit.m │ ├── get.m │ ├── header_newUID.m │ ├── method_template.m │ ├── outputDicom_write.m │ ├── run.m │ ├── set.m │ ├── sys_print.m │ ├── tuple_print.m │ ├── vdisp.m │ └── vprintf.m ├── @img2dicom │ ├── c_print.m │ ├── command.log │ ├── cprint.m │ ├── dicomHeader_read.m │ ├── display.m │ ├── error_exit.m │ ├── fdisplay.m │ ├── get.m │ ├── header_newUID.m │ ├── img2dicom.m │ ├── inputImages_read.m │ ├── method_template.m │ ├── outputDicom_write.m │ ├── run.m │ ├── set.m │ ├── sys_print.m │ ├── tuple_print.m │ ├── vdisp.m │ └── vprintf.m └── @stack │ ├── display.m │ ├── pop.m │ ├── push.m │ └── stack.m ├── fetal_extract ├── fetal_extract_core.m ├── fetal_extract_core1.m ├── fetalbrain_extract.m ├── gaussianBlur.m ├── gaussianMask.m ├── load_nii_hdr.m ├── snakedeform.m └── xconv2.m └── misc ├── ADCASL_stats.m ├── CA_visualizing_component_dat.m ├── F.mat ├── KHdc_analyze.m ├── K_filter.m ├── Qlearn.m ├── QlearnBasic.m ├── Qtest.m ├── R.mat ├── SA_cone.m ├── SA_sphere.m ├── SA_sphereCut.m ├── TSfft.m ├── TSfft2D.m ├── TSfft3D.m ├── V_cone.m ├── V_normalize.m ├── V_sphere.m ├── V_sphereCut.m ├── Viewer3D ├── ._license.txt ├── ._render.m ├── ._viewer3d.fig ├── ._viewer3d.m ├── ColorProfiles │ ├── ._CT_Blue_Red.mat │ ├── ._CT_Purple_White.mat │ ├── CT_Blue_Red.mat │ └── CT_Purple_White.mat ├── ExampleData │ ├── ._CommandlineData.mat │ ├── ._TestVolume.mat │ ├── CommandlineData.mat │ └── TestVolume.mat ├── Help │ ├── ._help001.png │ ├── ._help002.png │ ├── ._help003.png │ ├── ._help004.png │ ├── ._help005.png │ ├── ._help006.png │ ├── ._help007.png │ ├── ._help008.png │ ├── ._help009.png │ ├── ._help010.png │ ├── ._help011.png │ ├── ._help012.png │ ├── ._help013.png │ ├── ._help014.png │ ├── ._help015.png │ ├── ._help016.png │ ├── ._help017.png │ ├── ._help018.png │ ├── ._help019.png │ ├── ._help020.png │ ├── ._help021.png │ ├── ._help022.png │ ├── ._help023.png │ ├── ._info.html │ ├── help001.png │ ├── help002.png │ ├── help003.png │ ├── help004.png │ ├── help005.png │ ├── help006.png │ ├── help007.png │ ├── help008.png │ ├── help009.png │ ├── help010.png │ ├── help011.png │ ├── help012.png │ ├── help013.png │ ├── help014.png │ ├── help015.png │ ├── help016.png │ ├── help017.png │ ├── help018.png │ ├── help019.png │ ├── help020.png │ ├── help021.png │ ├── help022.png │ ├── help023.png │ └── info.html ├── Old_Viewer3D_with_c_code │ ├── ._icon_mouse_pan.png │ ├── ._icon_mouse_rotate1.png │ ├── ._icon_mouse_rotate2.png │ ├── ._icon_mouse_zoom.png │ ├── ._makeShearWarpMatrix.m │ ├── ._makeViewMatrix.m │ ├── ._render_bw.m │ ├── ._render_color.m │ ├── ._render_mip.m │ ├── ._render_shaded.m │ ├── ._viewer3d.fig │ ├── ._viewer3d.m │ ├── ._viewer3d_about.fig │ ├── ._viewer3d_about.m │ ├── ._viewer3d_error.fig │ ├── ._viewer3d_error.m │ ├── ._viewer3d_histogram.fig │ ├── ._viewer3d_histogram.m │ ├── ._warp.m │ ├── help │ │ ├── ._help001.png │ │ ├── ._help002.png │ │ ├── ._help003.png │ │ ├── ._help004.png │ │ ├── ._help005.png │ │ ├── ._help006.png │ │ ├── ._help007.png │ │ ├── ._help008.png │ │ ├── ._info.html │ │ ├── help001.png │ │ ├── help002.png │ │ ├── help003.png │ │ ├── help004.png │ │ ├── help005.png │ │ ├── help006.png │ │ ├── help007.png │ │ ├── help008.png │ │ └── info.html │ ├── icon_mouse_pan.png │ ├── icon_mouse_rotate1.png │ ├── icon_mouse_rotate2.png │ ├── icon_mouse_zoom.png │ ├── makeShearWarpMatrix.m │ ├── makeViewMatrix.m │ ├── mex_c-code │ │ ├── ._compile_c_files.m │ │ ├── ._render_bw.m │ │ ├── ._render_color.m │ │ ├── ._render_mex_mip_double.c │ │ ├── ._render_mex_mip_single.c │ │ ├── ._render_mex_mip_uint16.c │ │ ├── ._render_mex_mip_uint8.c │ │ ├── ._render_mex_vr_double.c │ │ ├── ._render_mex_vr_single.c │ │ ├── ._render_mex_vr_uint16.c │ │ ├── ._render_mex_vr_uint8.c │ │ ├── ._render_mex_vrc_double.c │ │ ├── ._render_mex_vrc_single.c │ │ ├── ._render_mex_vrc_uint16.c │ │ ├── ._render_mex_vrc_uint8.c │ │ ├── ._render_mex_vrs_double.c │ │ ├── ._render_mex_vrs_single.c │ │ ├── ._render_mex_vrs_uint16.c │ │ ├── ._render_mex_vrs_uint8.c │ │ ├── ._render_mip.m │ │ ├── ._render_shaded.m │ │ ├── ._warp.c │ │ ├── compile_c_files.m │ │ ├── render_bw.m │ │ ├── render_color.m │ │ ├── render_mex_mip_double.c │ │ ├── render_mex_mip_single.c │ │ ├── render_mex_mip_uint16.c │ │ ├── render_mex_mip_uint8.c │ │ ├── render_mex_vr_double.c │ │ ├── render_mex_vr_single.c │ │ ├── render_mex_vr_uint16.c │ │ ├── render_mex_vr_uint8.c │ │ ├── render_mex_vrc_double.c │ │ ├── render_mex_vrc_single.c │ │ ├── render_mex_vrc_uint16.c │ │ ├── render_mex_vrc_uint8.c │ │ ├── render_mex_vrs_double.c │ │ ├── render_mex_vrs_single.c │ │ ├── render_mex_vrs_uint16.c │ │ ├── render_mex_vrs_uint8.c │ │ ├── render_mip.m │ │ ├── render_shaded.m │ │ └── warp.c │ ├── render_bw.m │ ├── render_color.m │ ├── render_mip.m │ ├── render_shaded.m │ ├── viewer3d.fig │ ├── viewer3d.m │ ├── viewer3d_about.fig │ ├── viewer3d_about.m │ ├── viewer3d_error.fig │ ├── viewer3d_error.m │ ├── viewer3d_histogram.fig │ ├── viewer3d_histogram.m │ └── warp.m ├── ReadData3D │ ├── ._ReadData3D.fig │ ├── ._ReadData3D.m │ ├── ._lastfile.mat │ ├── ReadData3D.fig │ ├── ReadData3D.m │ ├── dicom │ │ ├── ._choose_from_list.m │ │ ├── ._dicom_folder_info.m │ │ ├── ._dicom_read_header.m │ │ ├── ._dicom_read_volume.m │ │ ├── ._dicom_write_volume.m │ │ ├── choose_from_list.m │ │ ├── dicom_folder_info.m │ │ ├── dicom_read_header.m │ │ ├── dicom_read_volume.m │ │ └── dicom_write_volume.m │ ├── gipl │ │ ├── ._gipl_read_header.m │ │ ├── ._gipl_read_volume.m │ │ ├── ._gipl_write_volume.m │ │ ├── gipl_read_header.m │ │ ├── gipl_read_volume.m │ │ └── gipl_write_volume.m │ ├── hdr │ │ ├── ._hdr_read_header.m │ │ ├── ._hdr_read_volume.m │ │ ├── hdr_read_header.m │ │ └── hdr_read_volume.m │ ├── isi │ │ ├── ._isi_read_header.m │ │ ├── ._isi_read_volume.m │ │ ├── isi_read_header.m │ │ └── isi_read_volume.m │ ├── lastfile.mat │ ├── mha │ │ ├── ._mha_read_header.m │ │ ├── ._mha_read_volume.m │ │ ├── mha_read_header.m │ │ └── mha_read_volume.m │ ├── nii │ │ ├── ._nii_read_header.m │ │ ├── ._nii_read_volume.m │ │ ├── nii_read_header.m │ │ └── nii_read_volume.m │ ├── par │ │ ├── ._par_read_header.m │ │ ├── ._par_read_volume.m │ │ ├── par_read_header.m │ │ └── par_read_volume.m │ ├── raw │ │ ├── ._raw_read_header.fig │ │ ├── ._raw_read_header.m │ │ ├── ._raw_read_volume.m │ │ ├── raw_read_header.fig │ │ ├── raw_read_header.m │ │ └── raw_read_volume.m │ ├── subfunctions │ │ ├── ._ErrorData3D.fig │ │ ├── ._ErrorData3D.m │ │ ├── ._InfoData3D.fig │ │ ├── ._InfoData3D.m │ │ ├── ErrorData3D.fig │ │ ├── ErrorData3D.m │ │ ├── InfoData3D.fig │ │ └── InfoData3D.m │ ├── v3d │ │ ├── ._v3d_read_header.m │ │ ├── ._v3d_read_volume.m │ │ ├── ._v3d_write_volume.m │ │ ├── v3d_read_header.m │ │ ├── v3d_read_volume.m │ │ └── v3d_write_volume.m │ ├── vff │ │ ├── ._vff_read_header.m │ │ ├── ._vff_read_volume.m │ │ ├── vff_read_header.m │ │ └── vff_read_volume.m │ ├── vmp │ │ ├── ._vmp_read_header.m │ │ ├── ._vmp_read_volume.m │ │ ├── vmp_read_header.m │ │ └── vmp_read_volume.m │ ├── vtk │ │ ├── ._vtk_read_header.m │ │ ├── ._vtk_read_volume.m │ │ ├── vtk_read_header.m │ │ └── vtk_read_volume.m │ └── xif │ │ ├── ._xif_read_header.m │ │ ├── ._xif_read_volume.m │ │ ├── xif_read_header.m │ │ └── xif_read_volume.m ├── SubFunctions │ ├── ._affine_transform_2d_double.c │ ├── ._affine_transform_2d_double.m │ ├── ._bitmapplot.m │ ├── ._bitmaptext.m │ ├── ._getMyData.m │ ├── ._image_interpolation.c │ ├── ._image_interpolation.h │ ├── ._image_interpolation.m │ ├── ._interpcontour.m │ ├── ._makeViewMatrix.m │ ├── ._menubar.m │ ├── ._setMyData.m │ ├── ._structfind.m │ ├── ._viewer3d_about.fig │ ├── ._viewer3d_about.m │ ├── ._viewer3d_console.fig │ ├── ._viewer3d_console.m │ ├── ._viewer3d_contrast.fig │ ├── ._viewer3d_contrast.m │ ├── ._viewer3d_dicominfo.fig │ ├── ._viewer3d_dicominfo.m │ ├── ._viewer3d_error.fig │ ├── ._viewer3d_error.m │ ├── ._viewer3d_histogram.fig │ ├── ._viewer3d_histogram.m │ ├── ._viewer3d_lightvector.fig │ ├── ._viewer3d_lightvector.m │ ├── ._viewer3d_qualityspeed.fig │ ├── ._viewer3d_qualityspeed.m │ ├── ._viewer3d_segment.fig │ ├── ._viewer3d_segment.m │ ├── ._viewer3d_voxelsize.fig │ ├── ._viewer3d_voxelsize.m │ ├── ._viewer3d_workspacevars.fig │ ├── ._viewer3d_workspacevars.m │ ├── BasicSnake_version2d │ │ ├── ._DrawSegmentedArea2D.m │ │ ├── ._ExternalForceImage2D.m │ │ ├── ._ExternalForceImage3D.m │ │ ├── ._GVFOptimizeImageForces2D.m │ │ ├── ._GVFOptimizeImageForces3D.m │ │ ├── ._GetContourNormals2D.m │ │ ├── ._ImageDerivatives2D.m │ │ ├── ._ImageDerivatives3D.m │ │ ├── ._InterpolateContourPoints2D.m │ │ ├── ._MakeContourClockwise2D.m │ │ ├── ._MakeContourClockwise3D.m │ │ ├── ._PatchNormals3D.m │ │ ├── ._PatchNormalsDouble.c │ │ ├── ._PatchNormalsDouble.m │ │ ├── ._SeparateKernel.m │ │ ├── ._Snake2D.m │ │ ├── ._Snake3D.m │ │ ├── ._SnakeInternalForceMatrix2D.m │ │ ├── ._SnakeInternalForceMatrix3D.m │ │ ├── ._SnakeMoveIteration2D.m │ │ ├── ._SnakeMoveIteration3D.m │ │ ├── ._SphereMesh.mat │ │ ├── ._imgaussian.m │ │ ├── ._testimage.png │ │ ├── ._testimage2.png │ │ ├── ._testvolume.mat │ │ ├── DrawSegmentedArea2D.m │ │ ├── ExternalForceImage2D.m │ │ ├── ExternalForceImage3D.m │ │ ├── GVFOptimizeImageForces2D.m │ │ ├── GVFOptimizeImageForces3D.m │ │ ├── GetContourNormals2D.m │ │ ├── ImageDerivatives2D.m │ │ ├── ImageDerivatives3D.m │ │ ├── InterpolateContourPoints2D.m │ │ ├── MakeContourClockwise2D.m │ │ ├── MakeContourClockwise3D.m │ │ ├── PatchNormals3D.m │ │ ├── PatchNormalsDouble.c │ │ ├── PatchNormalsDouble.m │ │ ├── SeparateKernel.m │ │ ├── Snake2D.m │ │ ├── Snake3D.m │ │ ├── SnakeInternalForceMatrix2D.m │ │ ├── SnakeInternalForceMatrix3D.m │ │ ├── SnakeMoveIteration2D.m │ │ ├── SnakeMoveIteration3D.m │ │ ├── SphereMesh.mat │ │ ├── imgaussian.m │ │ ├── testimage.png │ │ ├── testimage2.png │ │ └── testvolume.mat │ ├── affine_transform_2d_double.c │ ├── affine_transform_2d_double.m │ ├── bitmapplot.m │ ├── bitmaptext.m │ ├── getMyData.m │ ├── image_interpolation.c │ ├── image_interpolation.h │ ├── image_interpolation.m │ ├── interpcontour.m │ ├── makeViewMatrix.m │ ├── menubar.m │ ├── setMyData.m │ ├── structfind.m │ ├── viewer3d_about.fig │ ├── viewer3d_about.m │ ├── viewer3d_console.fig │ ├── viewer3d_console.m │ ├── viewer3d_contrast.fig │ ├── viewer3d_contrast.m │ ├── viewer3d_dicominfo.fig │ ├── viewer3d_dicominfo.m │ ├── viewer3d_error.fig │ ├── viewer3d_error.m │ ├── viewer3d_histogram.fig │ ├── viewer3d_histogram.m │ ├── viewer3d_lightvector.fig │ ├── viewer3d_lightvector.m │ ├── viewer3d_qualityspeed.fig │ ├── viewer3d_qualityspeed.m │ ├── viewer3d_segment.fig │ ├── viewer3d_segment.m │ ├── viewer3d_voxelsize.fig │ ├── viewer3d_voxelsize.m │ ├── viewer3d_workspacevars.fig │ └── viewer3d_workspacevars.m ├── license.txt ├── render.m ├── viewer3d.fig └── viewer3d.m ├── adcasl_bar.m ├── ait_centroid.m ├── arclength.m ├── autodijk_annotationsMake.m ├── b10_convertFrom.m ├── b10_convertTo.m ├── b2img.m ├── bar2plot.m ├── barwitherr.m ├── basac_debug.m ├── basac_drive.m ├── basename.m ├── binomial.m ├── binomialInd_2find.m ├── boiler_weight.m ├── brain_data.m ├── brain_percDo.m ├── bshort2img.m ├── c_shell.m ├── centroid1D_find.m ├── centroidND_find.m ├── centroidPC_find.m ├── centroid_points.m ├── centroids_process.m ├── colorprintf.m ├── colprintf.m ├── colsprintf.m ├── compress.m ├── converge.m ├── convert.m ├── convert.orig.m ├── cop_plot.m ├── cortParc_drive.m ├── cortParc_env.m ├── cprintd.m ├── cprintdn.m ├── cprintf.m ├── cprintfn.m ├── cprints.m ├── cprintsn.m ├── curvatureAnalysis_drive.m ├── curvs_delFind.m ├── curvs_plot.log ├── curvs_plot.m ├── dataSet1D_create.m ├── dataSet2D_create.m ├── dataSet3D_create.m ├── dataSetFFT2D_create.m ├── dcm_anonymize_drive.m ├── dijk.m ├── dijkstra.m ├── dijkstra_binaryMeta.m ├── dijkstra_binarySearch.m ├── dijkstra_clusterFromFile.m ├── dijkstra_clusterMeta.m ├── dijkstra_metaGA.m ├── dijkstra_optimiseToPath.m ├── dijkstra_sga.m ├── dijkstra_sga2.m ├── dijkstra_weightProc.m ├── dist.m ├── dls.m ├── dobjfunc-old.m ├── dobjfunc.m ├── drawarrow.m ├── dsearchn_image.m ├── dump.m ├── emg_plot.m ├── emg_plot.orig.m ├── equMyong_plot.m ├── error_exit.m ├── f41.m ├── f41_plot.ps ├── f_sigmoid01.m ├── fact.m ├── fid_echoesCrop.m ├── fid_echoesProcess.m ├── filter_bandBlock.m ├── filter_bandPass.m ├── filter_gaussianCurv.m ├── filter_lowerPass.m ├── filter_upperPass.m ├── freesurfer_fread3.m ├── freesurfer_read_surf.m ├── fsvolume_crop.m ├── function_template.m ├── ga_dobjfunc.m ├── ga_struct.m ├── grf_plot.m ├── grid_make.m ├── hash.m ├── hdrload.m ├── highlight.m ├── hisc.m ├── histmulti5.m ├── histogram.m ├── img2dicom_drive.m ├── invTest.m ├── is_vect.m ├── jointAngle_plot.m ├── jointTorque_plot.m ├── k1k2_batch.m ├── k1k2_createCurv.m ├── k1k2_mesh.m ├── kalman ├── Colored.m ├── Correlated.m ├── Covariance.m ├── ExtendedBody.m ├── FixLagSmooth.m ├── FixPtSmooth.m ├── HinfTF.m ├── Hinfinity.m ├── HybridBody.m ├── KalmanConstrained.m ├── Mismodel.m ├── MotorKalman.m ├── MotorSim.m ├── Multiple.m ├── Parameter.m ├── Reduced.m ├── Robust.m └── Schmidt.m ├── kentron_artifactClean.m ├── kentron_diffusionUnwarp.m ├── kentron_dirAve.m ├── kentron_struct.m ├── kentron_volAn.m ├── kentron_volAnBatch.m ├── kentron_volDiff.m ├── kentron_volDiffBinomial.m ├── life2.m ├── linMat_create.m ├── line_solve1.m ├── line_solve2.m ├── lls.m ├── load_avg_matrix.m ├── lobe_cmp.m ├── look3d.m ├── look3d ├── ._license.txt ├── ._logo.png ├── ._look3d.fig ├── ._look3d.m ├── ._mha_read_header.m ├── ._mha_read_volume.m ├── ._mhd_read_image.m ├── ._xview.png ├── ._yview.png ├── ._zview.png ├── data │ ├── ._CoordinateFrame.mhd │ ├── ._CoordinateFrame.raw │ ├── ._SheepFemurExample.mhd │ ├── ._SheepFemurExample.raw │ ├── ._ffdreg_01_cgx.mhd │ ├── ._ffdreg_01_cgx.raw │ ├── ._ffdreg_01_cgy.mhd │ ├── ._ffdreg_01_cgy.raw │ ├── ._ffdreg_01_cgz.mhd │ ├── ._ffdreg_01_cgz.raw │ ├── CoordinateFrame.mhd │ ├── CoordinateFrame.raw │ ├── SheepFemurExample.mhd │ ├── SheepFemurExample.raw │ ├── ffdreg_01_cgx.mhd │ ├── ffdreg_01_cgx.raw │ ├── ffdreg_01_cgy.mhd │ ├── ffdreg_01_cgy.raw │ ├── ffdreg_01_cgz.mhd │ └── ffdreg_01_cgz.raw ├── license.txt ├── logo.png ├── look3d.fig ├── look3d.m ├── mha_read_header.m ├── mha_read_volume.m ├── mhd_read_image.m ├── xview.png ├── yview.png └── zview.png ├── lprintf.m ├── ls09.m ├── lzg.m ├── lzg.orig.m ├── lzg_summary.m ├── m2pc.m ├── manova_calc.m ├── matrixTriangle_set.m ├── mbf.m ├── mha_read_header.m ├── mha_read_volume.m ├── mhd_read_image.m ├── motl2cor.m ├── mri_volStats.m ├── mris_XYZdiff.m ├── mris_circleROI.m ├── mris_colorTableMake.m ├── mris_curvToLabel.m ├── mris_display.m ├── mutual_information.m ├── neighbours_find.m ├── neighbours_find1.m ├── neighbours_findFast.m ├── nicd_analyze.m ├── nicd_drive.m ├── nobelCallingCards.m ├── nohup.out ├── normalize.m ├── otlColor_struct.m ├── otl_struct.m ├── out.ps ├── overView_plot.m ├── pconnect.m ├── permutations_find.m ├── phoneRate.m ├── plasma.m ├── points_connect.m ├── poistatsodf.m ├── poly_connect.m ├── prompt.m ├── pulse_filter.m ├── putBinA.m ├── quantise.m ├── readColData.m ├── region_percOverlap.m ├── resfun.m ├── reward.m ├── rms.m ├── rosePhantom_plot.m ├── roteer.m ├── rsum.m ├── sa2v.m ├── save_mgh3.m ├── sawTooth.m ├── sbasename.m ├── setPrompt.m ├── setPromptCon.m ├── sh_entropy.m ├── sh_j_entropy.m ├── sigmoidal.m ├── spectrum_barh.m ├── speedComp.m ├── speedComp2.m ├── speedComp2.ps ├── speedComp_o.m ├── spiral_indicesDetermine.m ├── splice.m ├── split.m ├── stats_BE.m ├── stats_BE.pre-marker.m ├── stats_flatK.m ├── stats_flatK2.m ├── stats_meta.m ├── stats_metaFold.m ├── stats_metaVolFoldPlot.m ├── str_clean.m ├── surfcurv_doHistogram.m ├── 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