├── .gitignore ├── .travis.yml ├── CMakeLists.txt ├── LICENSE ├── README.md ├── auxcodes ├── ChebyCodesOrrSomm_NormalModeGeneration.tar.gz ├── OldCode_StandardDynamicProcedure.F90 ├── act.F90 ├── dynamicprocedure.F90 ├── globalDynamicProcedure.F90 ├── igridWallM_legacy_code │ ├── actuatorDiskyawF90 │ ├── actuatorLineold.F90 │ ├── amd_model_get_nuSGS.F90 │ ├── getRHS_common.F90 │ ├── getRHS_common_CD.F90 │ ├── getRHS_common_FD.F90 │ ├── igridWallM.F90 │ ├── igrid_aux_code │ │ └── fringe_method.F90 │ ├── initialize.F90 │ ├── mgm_model.F90 │ ├── old_TimeStepping │ │ └── old_adamsBashforth.F90 │ ├── poisson.F90 │ ├── poisson │ │ └── poisson_eq.F90 │ ├── sgsmod.F90 │ ├── sigma_model_get_nuSGS.F90 │ ├── smagorinsky_model_get_nuSGS.F90 │ ├── test_PoissonNP.F90 │ ├── test_PressureCalculation.F90 │ ├── test_Projection.F90 │ ├── test_poisson.F90 │ └── wallmodelMod.F90 ├── niranjanChanFlow │ ├── chanflowp3dfft_Ekman.f90 │ └── input.in ├── nufft │ ├── fourierGabor.F90 │ ├── nufft.F90 │ └── rdt.F90 └── sgsmod_igrid │ ├── OldCode_StandardDynamicProcedure.F90 │ ├── act.F90 │ └── globalDynamicProcedure.F90 ├── dependencies ├── 2decomp_fft-1.5.847.tar.gz ├── Lib_VTK_IO.tar.gz ├── fftpack.tar.gz ├── fftw-3.3.5.tar.gz └── hdf5-1.8.18.tar.gz ├── docs └── manual.tex ├── problems ├── CMakeLists.txt ├── ShuOsher.F90 ├── StiffShock.F90 ├── burgers.F90 ├── compressible │ ├── CHIT.F90 │ ├── CHIT_files │ │ ├── hooks.F90 │ │ └── input.dat │ ├── CMakeLists.txt │ ├── shocktube.F90 │ ├── shocktube_files │ │ ├── hooks.F90 │ │ └── input.dat │ ├── shuosher.F90 │ ├── shuosher_files │ │ ├── hooks.F90 │ │ └── input.dat │ ├── speciesAdvection.F90 │ ├── speciesAdvection_files │ │ ├── hooks.F90 │ │ └── input.dat │ ├── species_shocktube.F90 │ ├── species_shocktube_files │ │ ├── hooks.F90 │ │ └── input.dat │ ├── taylorgreen.F90 │ └── taylorgreen_files │ │ ├── hooks.F90 │ │ └── input.dat ├── incompressible │ ├── CMakeLists.txt │ ├── ChangeFrameSpeedHIT.F90 │ ├── ChangeFrameSpeedHIT_files │ │ └── input_upsampleFields.dat │ ├── EkmanLayerGrowth.F90 │ ├── EkmanLayerGrowth_files │ │ ├── initialize.F90 │ │ ├── input.dat │ │ ├── io.F90 │ │ └── temporalHook.F90 │ ├── HIT_Periodic_moving.F90 │ ├── HIT_Periodic_moving_files │ │ ├── initialize.F90 │ │ ├── input_fourier.dat │ │ ├── io.F90 │ │ └── temporalHook.F90 │ ├── PressureSplitRapidSlow.F90 │ ├── PressureSplitRapidSlow_files │ │ └── input.dat │ ├── ScaleSplittingPeriodic.F90 │ ├── ScaleSplittingPeriodic_files │ │ ├── FilterInfo001_input.inp │ │ ├── FilterInfo002_input.inp │ │ └── input.dat │ ├── StratifiedShearLayer.F90 │ ├── StratifiedShearLayerBudgets.F90 │ ├── StratifiedShearLayerBudgets_files │ │ └── input.dat │ ├── StratifiedShearLayer_files │ │ ├── initialize.F90 │ │ ├── input.dat │ │ ├── input_Ri0.05.dat │ │ ├── io.F90 │ │ └── temporalHook.F90 │ ├── TaylorGreenPeriodic.F90 │ ├── TaylorGreenPeriodic_files │ │ ├── initialize.F90 │ │ ├── input_laminar.dat │ │ ├── io.F90 │ │ └── temporalHook.F90 │ ├── TimeAvgField.F90 │ ├── TimeAvgField_files │ │ └── input.dat │ ├── TimeAvgVort.F90 │ ├── TimeAvgVort_files │ │ └── input.dat │ ├── check_SGS_HIT.F90 │ ├── check_SGS_HIT_files │ │ └── input.dat │ ├── convert_restart_to_viz.F90 │ ├── convert_restart_to_viz_files │ │ └── input_convert.dat │ ├── filter_fields_periodic.F90 │ ├── filter_fields_periodic_files │ │ └── input.dat │ ├── gabls_igrid.F90 │ ├── gabls_igrid_files │ │ ├── initialize.F90 │ │ ├── input_gabls.dat │ │ ├── io.F90 │ │ └── temporalHook.F90 │ ├── neutral_pbl.F90 │ ├── neutral_pbl_files │ │ ├── initialize.F90 │ │ ├── input.dat │ │ ├── io.F90 │ │ └── temporalHook.F90 │ ├── pbl_igrid.F90 │ ├── pbl_igrid_files │ │ ├── initialize.F90 │ │ ├── input_pbl_spinup.dat │ │ ├── io.F90 │ │ └── temporalHook.F90 │ ├── upsampleFields.F90 │ └── upsampleFields_files │ │ └── input_upsampleFields.dat ├── plot_ShuOsher.py ├── plot_shocktube.py ├── postprocessing │ ├── CMakeLists.txt │ ├── IRM_scaledecomp.F90 │ ├── IRM_scaledecomp_files │ │ └── input.dat │ ├── IRM_vorticity.F90 │ └── IRM_vorticity_files │ │ └── input.dat ├── shocktube_1D.F90 ├── solids │ ├── CMakeLists.txt │ ├── ContactDiscont.F90 │ ├── ContactDiscont_files │ │ ├── hooks.F90 │ │ └── input.dat │ ├── ManufacturedSolution.F90 │ ├── ManufacturedSolutionPlastic.F90 │ ├── ManufacturedSolutionPlastic_files │ │ ├── hooks.F90 │ │ ├── input.dat │ │ └── input_plastic.dat │ ├── ManufacturedSolution_files │ │ ├── hooks.F90 │ │ ├── input.dat │ │ └── input_plastic.dat │ ├── PlasticRelaxation.F90 │ ├── PlasticRelaxation_files │ │ ├── hooks.F90 │ │ └── input.dat │ ├── ShockEntropy.F90 │ ├── ShockEntropy_files │ │ ├── hooks.F90 │ │ └── input.dat │ ├── ShockVortEntr.F90 │ ├── ShockVortEntr_files │ │ ├── hooks.F90 │ │ └── input.dat │ ├── SolidShock.F90 │ ├── SolidShock_files │ │ ├── hooks.F90 │ │ └── input.dat │ ├── StiffgasShock.F90 │ ├── StiffgasShock_files │ │ ├── hooks.F90 │ │ └── input.dat │ ├── impact.F90 │ ├── impact_files │ │ ├── hooks.F90 │ │ ├── input.dat │ │ └── input_plastic.dat │ ├── nohxy.F90 │ ├── nohxy_files │ │ ├── hooks.F90 │ │ └── input.dat │ ├── normal_and_shear.F90 │ ├── normal_and_shear_files │ │ ├── hooks.F90 │ │ ├── input.dat │ │ └── input_plastic.dat │ ├── obliqueimpact.F90 │ ├── obliqueimpact_files │ │ ├── hooks.F90 │ │ └── input.dat │ ├── pistonhowell.F90 │ ├── pistonhowell_files │ │ ├── hooks.F90 │ │ ├── input.dat │ │ └── input_plastic.dat │ ├── taylorgreen_sgrid.F90 │ ├── taylorgreen_sgrid_files │ │ ├── hooks.F90 │ │ └── input.dat │ ├── test_EOS.F90 │ ├── test_EOS_files │ │ └── input.dat │ ├── test_plastic_deformation.F90 │ ├── test_plastic_deformation_files │ │ └── input.dat │ ├── vorticitytest.F90 │ └── vorticitytest_files │ │ ├── hooks.F90 │ │ └── input.dat └── turbines │ ├── AD_Coriolis.F90 │ ├── AD_Coriolis_files │ ├── ActuatorDisk_001_input.inp │ ├── initialize.F90 │ ├── input.dat │ ├── input_AD.dat │ ├── io.F90 │ ├── temporalHook.F90 │ └── turbInfo │ │ ├── ActuatorDisk_001_input.inp │ │ ├── ActuatorDisk_002_input.inp │ │ ├── array_3x3 │ │ ├── ActuatorDisk_001_input.inp │ │ ├── ActuatorDisk_002_input.inp │ │ ├── ActuatorDisk_003_input.inp │ │ ├── ActuatorDisk_004_input.inp │ │ ├── ActuatorDisk_005_input.inp │ │ ├── ActuatorDisk_006_input.inp │ │ ├── ActuatorDisk_007_input.inp │ │ ├── ActuatorDisk_008_input.inp │ │ └── ActuatorDisk_009_input.inp │ │ ├── array_3x3_stag │ │ ├── ActuatorDisk_001_input.inp │ │ ├── ActuatorDisk_002_input.inp │ │ ├── ActuatorDisk_003_input.inp │ │ ├── ActuatorDisk_004_input.inp │ │ ├── ActuatorDisk_005_input.inp │ │ ├── ActuatorDisk_006_input.inp │ │ ├── ActuatorDisk_007_input.inp │ │ ├── ActuatorDisk_008_input.inp │ │ └── ActuatorDisk_009_input.inp │ │ ├── array_3x3_stag_compact │ │ ├── ActuatorDisk_001_input.inp │ │ ├── ActuatorDisk_002_input.inp │ │ ├── ActuatorDisk_003_input.inp │ │ ├── ActuatorDisk_004_input.inp │ │ ├── ActuatorDisk_005_input.inp │ │ ├── ActuatorDisk_006_input.inp │ │ ├── ActuatorDisk_007_input.inp │ │ ├── ActuatorDisk_008_input.inp │ │ └── ActuatorDisk_009_input.inp │ │ └── single │ │ └── ActuatorDisk_001_input.inp │ ├── CMakeLists.txt │ ├── HIT_AD_interact.F90 │ ├── HIT_AD_interact_files │ ├── ActuatorDisk_001_input.inp │ ├── initialize.F90 │ ├── input.dat │ ├── input_AD.dat │ ├── input_hit.dat │ ├── input_interaction.dat │ ├── io.F90 │ ├── temporalHook.F90 │ └── turbInfo │ │ └── ActuatorDisk_001_input.inp │ ├── concurrentSimulation.F90 │ ├── concurrentSimulation_files │ ├── initialize.F90 │ ├── input.dat │ ├── input_main.dat │ ├── input_prec.dat │ ├── io.F90 │ ├── temporalHook.F90 │ └── turbInfo │ │ └── ActuatorDisk_001_input.inp │ ├── getEnergyBudgetTerms.F90 │ ├── getEnergyBudgetTerms_files │ └── input.dat │ ├── getMomentumBudgetTerms.F90 │ ├── getMomentumBudgetTerms_files │ └── input.dat │ ├── getTKEbudgetTerms.F90 │ ├── getTKEbudgetTerms_files │ └── input.dat │ ├── getTurbineAndSGSrhs.F90 │ ├── getTurbineAndSGSrhs_files │ └── input.dat │ ├── isolatedTurbine.F90 │ ├── isolatedTurbine_files │ ├── initialize.F90 │ ├── input.dat │ ├── io.F90 │ ├── temporalHook.F90 │ └── turbInfo │ │ └── ActuatorDisk_001_input.inp │ ├── pblwt.F90 │ └── pblwt_files │ ├── CalafLayout.tar.gz │ ├── initialize.F90 │ ├── input_pblwt.dat │ ├── input_pblwt_igrid.dat │ ├── input_pblwt_niranjan.dat │ ├── io.F90 │ ├── temporalHook.F90 │ └── turbInfo │ ├── ActuatorDisk_001_input.inp │ ├── ActuatorDisk_002_input.inp │ ├── ActuatorDisk_003_input.inp │ ├── ActuatorDisk_004_input.inp │ ├── ActuatorDisk_005_input.inp │ ├── ActuatorDisk_006_input.inp │ ├── ActuatorDisk_007_input.inp │ ├── ActuatorDisk_008_input.inp │ ├── ActuatorDisk_009_input.inp │ ├── ActuatorDisk_010_input.inp │ ├── ActuatorDisk_011_input.inp │ ├── ActuatorDisk_012_input.inp │ ├── ActuatorDisk_013_input.inp │ ├── ActuatorDisk_014_input.inp │ ├── ActuatorDisk_015_input.inp │ ├── ActuatorDisk_016_input.inp │ ├── ActuatorDisk_017_input.inp │ ├── ActuatorDisk_018_input.inp │ ├── ActuatorDisk_019_input.inp │ ├── ActuatorDisk_020_input.inp │ ├── ActuatorDisk_021_input.inp │ ├── ActuatorDisk_022_input.inp │ ├── ActuatorDisk_023_input.inp │ └── ActuatorDisk_024_input.inp ├── setup ├── SetupEnv_BlueWaters_Intel.sh ├── SetupEnv_CertaintyStanford_Intel.sh ├── SetupEnv_Comet_Intel.sh ├── SetupEnv_CornStanford_GNU.sh ├── SetupEnv_Darwin.sh ├── SetupEnv_LLNLCab_Intel.sh ├── SetupEnv_OatStanford_GNU.sh ├── SetupEnv_PeregrineHaswellNREL_Intel.sh ├── SetupEnv_PeregrineNREL_Intel.sh ├── SetupEnv_Reason_GNU.sh ├── SetupEnv_Sherlock-bigmem_Intel.sh ├── SetupEnv_Sherlock2_Intel.sh ├── SetupEnv_Sherlock_Intel.sh ├── SetupEnv_Stampede_Intel.sh ├── SetupEnv_Tommy_GNU.sh ├── SetupEnv_Travis_GNU.sh ├── SetupEnv_UziStanford_GNU.sh ├── SetupEnv_UziStanford_Intel.sh └── SetupEnv_WCRstanford_Intel.sh ├── src ├── CMakeLists.txt ├── compressible │ ├── EOS.F90 │ ├── IdealGasEOS.F90 │ ├── MixtureEOS.F90 │ ├── PowerLawViscosity.F90 │ ├── cgrid.F90 │ └── hooks_interface.F90 ├── derivatives │ ├── STAGG_CD06_files │ │ ├── ComputeTri_allRoutines.F90 │ │ ├── ComputeTri_common.F90 │ │ ├── D1RHS_C2C_common.F90 │ │ ├── D1RHS_C2E_common.F90 │ │ ├── D1RHS_E2C_common.F90 │ │ ├── D1RHS_E2E_common.F90 │ │ ├── D2RHS_C2C_common.F90 │ │ ├── D2RHS_E2E_common.F90 │ │ ├── InterpRHS_C2E_common.F90 │ │ ├── InterpRHS_E2C_common.F90 │ │ └── TridiagSolver_allRoutines.F90 │ ├── cd06.F90 │ ├── cd06stagg.F90 │ ├── cd10.F90 │ ├── dcts.F90 │ ├── derivatives.F90 │ └── ffts.F90 ├── filters │ ├── CF90_files │ │ ├── ComputeZRHS_common.F90 │ │ └── SolveZPenta_common.F90 │ ├── cf90.F90 │ ├── filters.F90 │ ├── gaussian.F90 │ ├── gaussian_files │ │ └── filz_common.F90 │ └── lstsq.F90 ├── grid │ └── grid.F90 ├── incompressible │ ├── KSpreprocess.F90 │ ├── PadeDerOps.F90 │ ├── PadePoisson.F90 │ ├── actuatorDisk.F90 │ ├── actuatorDisk_Type2.F90 │ ├── actuatorLine.F90 │ ├── filter_on_the_fly.F90 │ ├── forcingIsotropic.F90 │ ├── fringemethod.F90 │ ├── hooks_interface.F90 │ ├── igrid.F90 │ ├── igrid_operators_periodic.F90 │ ├── numerics_params.F90 │ ├── sgs_models │ │ ├── AMD.F90 │ │ ├── accessors.F90 │ │ ├── dynamicProcedure_sgs_igrid.F90 │ │ ├── eddyViscosity.F90 │ │ ├── init_destroy_sgs_igrid.F90 │ │ ├── sigma.F90 │ │ ├── smagorinsky.F90 │ │ ├── standardDynamicProcedure.F90 │ │ └── wallmodel.F90 │ ├── sgsmod_igrid.F90 │ ├── spectral.F90 │ ├── staggOps.F90 │ └── turbineMod.F90 ├── io │ ├── basic_io.F90 │ ├── io.F90 │ ├── io_VTK.F90 │ └── io_hdf5.F90 ├── solid │ ├── ElasticEOS.F90 │ ├── GeneralMatEOS.F90 │ ├── Sep1SolidEOS.F90 │ ├── StiffGasEOS.F90 │ ├── hooks_interface.F90 │ └── sgrid.F90 └── utilities │ ├── Miranda_Reader.F90 │ ├── NewtonSolver.F90 │ ├── PoissonPeriodic.F90 │ ├── RKCoeffs.F90 │ ├── constants.F90 │ ├── dealiasing_files │ ├── DealiasingInit.F90 │ └── UpDnSamplingStuff.F90 │ ├── exits.F90 │ ├── fft_2d.F90 │ ├── fft_3d.F90 │ ├── gridtools.F90 │ ├── interpolation.F90 │ ├── kind_parameters.F90 │ ├── mytranspose2D.F90 │ ├── operators.F90 │ ├── random.F90 │ ├── reductions.F90 │ ├── spectral.F90 │ └── timer.F90 ├── tests ├── CMakeLists.txt ├── test_2D_transpose.F90 ├── test_2dFFT.F90 ├── test_CD06_Projection.F90 ├── test_Derivatives2ndOrder.F90 ├── test_HIT_init.F90 ├── test_HITforcing.F90 ├── test_Interp2ndOrder.F90 ├── test_Miranda_reader.F90 ├── test_NewtonSolver.F90 ├── test_Pade6ops_igrid.F90 ├── test_PadeDer_periodic.F90 ├── test_PoissonPeriodic.F90 ├── test_PressureProj_PeriodicCD06.F90 ├── test_STAGGcd06.F90 ├── test_STAGGfd02_periodic.F90 ├── test_ScalarDynProc_accuracy.F90 ├── test_ScalarDynProc_performance.F90 ├── test_VTK.F90 ├── test_actuatorDisk.F90 ├── test_actuatorLine.F90 ├── test_actuatorLine_files │ ├── ActuatorLine_001_input.inp │ ├── ActuatorLine_002_input.inp │ ├── ActuatorLine_003_input.inp │ ├── ActuatorLine_004_input.inp │ ├── ActuatorLine_005_input.inp │ ├── ActuatorLine_006_input.inp │ ├── AirfoilType_000_CD.inp │ ├── AirfoilType_000_CL.inp │ ├── BladeType_000_input.inp │ ├── TurbineType_000_input.inp │ └── input.in ├── test_cd06.F90 ├── test_cd10.F90 ├── test_cd10_NP.F90 ├── test_cd10_der2.F90 ├── test_cf90.F90 ├── test_channel1D.F90 ├── test_cmplx_mult.F90 ├── test_compare_fft.F90 ├── test_dcts.F90 ├── test_dealiasing3by2rule.F90 ├── test_derivatives.F90 ├── test_derivatives2D.F90 ├── test_derivatives_parallel.F90 ├── test_fft2.F90 ├── test_fft3.F90 ├── test_ffts.F90 ├── test_filters.F90 ├── test_filters_NP.F90 ├── test_filters_parallel.F90 ├── test_gaussian.F90 ├── test_io_VTK.F90 ├── test_io_hdf5.F90 ├── test_ksPreProcess.F90 ├── test_lstsq.F90 ├── test_mytranspose2D.F90 ├── test_openHITinput.F90 ├── test_operators.F90 ├── test_restart_read.F90 ├── test_restart_write.F90 ├── test_sgsmod_igrid.F90 ├── test_transpose.F90 ├── test_turbineMod.F90 ├── test_upsample1d.F90 └── test_windTurbineArray.F90 └── travis ├── 2decomp_fft_Makefile.inc ├── install-2decomp.sh ├── install-Lib_VTK_IO.sh ├── install-fftw.sh ├── install-hdf5.sh └── install-mpi.sh /.gitignore: -------------------------------------------------------------------------------- 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