├── .github └── workflows │ ├── documentation.yml │ ├── release.yml │ └── test.yml ├── .gitignore ├── CITATION.cff ├── LICENSE.md ├── MANIFEST.in ├── README.md ├── contribute.md ├── docker ├── hummingbird-testing │ └── Dockerfile └── psana │ └── Dockerfile ├── docs ├── .static │ └── .gitkeep ├── API │ ├── analysis.rst │ ├── backend.rst │ ├── interface.rst │ ├── ipc.rst │ ├── modules.rst │ ├── plotting.rst │ ├── ui.rst │ └── utils.rst ├── Makefile ├── advanced_examples.rst ├── basic_examples.rst ├── conf.py ├── configuration.rst ├── contribute.rst ├── getting_started.rst ├── images │ ├── arch.png │ ├── arch.svg │ ├── examples │ │ ├── basic │ │ │ ├── correlation.jpg │ │ │ ├── detector_histogram.jpg │ │ │ ├── detector_nrphotons.jpg │ │ │ ├── dummy_connecting.jpg │ │ │ ├── dummy_imagewindow1.jpg │ │ │ ├── dummy_imagewindow2.jpg │ │ │ ├── hitfinding.jpg │ │ │ ├── simulation_imagewindow1.jpg │ │ │ └── simulation_imagewindow2.jpg │ │ ├── detector │ │ │ ├── all.jpg │ │ │ ├── buffer.jpg │ │ │ ├── histogram_history.jpg │ │ │ ├── histogram_hit.jpg │ │ │ ├── nrphotons.jpg │ │ │ └── nrphotons_hist.jpg │ │ ├── lcls │ │ │ └── mimi_hits.jpg │ │ ├── recording │ │ │ ├── after.jpg │ │ │ ├── before.jpg │ │ │ └── scatter.png │ │ └── sizing │ │ │ └── fit_vs_data.jpg │ ├── frontend_nosources.jpg │ ├── frontend_sources.jpg │ ├── latex_logo.pdf │ ├── latex_logo.png │ └── latex_logo.svg ├── index.rst ├── installation.rst └── lcls_examples.rst ├── examples ├── advanced │ ├── correlation │ │ ├── conf.py │ │ └── virus.conf │ ├── extra_files │ │ ├── conf.py │ │ ├── geometry.h5 │ │ ├── mask.h5 │ │ └── virus.conf │ ├── mpi │ │ └── conf.py │ ├── recording │ │ └── conf.py │ ├── save_camera │ │ ├── brun.py │ │ ├── conf.py │ │ ├── cxiwriter.py │ │ ├── psana.cfg │ │ └── submit.py │ ├── sizing │ │ ├── conf.py │ │ ├── mask_cspad.h5 │ │ ├── mask_pnccd.h5 │ │ └── virus.conf │ └── sizing_radial │ │ ├── conf.py │ │ ├── mask_cspad.h5 │ │ ├── mask_pnccd.h5 │ │ └── virus.conf ├── basic │ ├── correlation.py │ ├── detector.py │ ├── dummy.py │ ├── hitfinding.py │ └── simulation.py ├── condor │ ├── conf.py │ └── virus.conf ├── debug │ └── shape_shifter.py ├── euxfel │ ├── pulses │ │ ├── allmodules.py │ │ └── singlemodule.py │ └── trains │ │ ├── allmodules.py │ │ └── singlemodule.py ├── flash │ ├── cluster-2017 │ │ └── source_this_file │ └── holo-2017 │ │ ├── conf.py │ │ ├── conf_offline.py │ │ ├── conf_online.py │ │ ├── conf_sphere_fit.py │ │ ├── conf_tof.py │ │ ├── ipynb │ │ └── camera.ipynb │ │ ├── notebooks │ │ ├── Hitscores.ipynb │ │ ├── MotorZ.ipynb │ │ ├── Multiple hits.ipynb │ │ ├── Patterson optimisation.ipynb │ │ ├── TOF plot.ipynb │ │ └── flash_tools.py │ │ ├── params.csv │ │ ├── params.py │ │ └── source_this_file ├── in-flight-holography │ └── calc_hitscores.py ├── lcls │ ├── cxitut13.py │ ├── mimi_dark.py │ └── mimi_hits.py ├── ptychography │ ├── write2cxi.py │ └── write2cxi_new.py ├── swissfel │ └── minimal.py └── uppsala │ ├── example_amo86615.py │ ├── example_dummy.py │ ├── psana.cfg │ ├── run_example_amo86615 │ └── run_example_dummy ├── hummingbird.py ├── hummingbird ├── __init__.py ├── analysis │ ├── __init__.py │ ├── agipd.py │ ├── beamline.py │ ├── cfel_geom.py │ ├── event.py │ ├── hitfinding.py │ ├── patterson.py │ ├── pixel_detector.py │ ├── recorder.py │ ├── sizing.py │ ├── stack.py │ ├── stxm.py │ ├── template.py │ ├── tof.py │ └── tracking.py ├── backend │ ├── __init__.py │ ├── conf │ │ └── dummy.py │ ├── dummy.py │ ├── euxfel.py │ ├── event_translator.py │ ├── flash.py │ ├── flash_utils │ │ ├── __init__.py │ │ ├── convert_frms6.py │ │ ├── holger_motors.py │ │ ├── read_daq_offline.py │ │ └── tomas_motors.py │ ├── lcls.py │ ├── record.py │ ├── swissfel.py │ ├── units.txt │ └── worker.py ├── interface │ ├── Qt.py │ ├── __init__.py │ ├── colorbar.py │ ├── data_source.py │ ├── gui.py │ ├── images │ │ ├── logo_32.png │ │ ├── logo_48.png │ │ ├── logo_48_transparent.png │ │ ├── logo_64.png │ │ ├── logo_big.png │ │ ├── resources.qrc │ │ ├── resources_rc.py │ │ └── svg_icons │ │ │ ├── add_backend.svg │ │ │ ├── add_image_plot.svg │ │ │ ├── add_line_plot.svg │ │ │ ├── recorder.svg │ │ │ ├── recorder_red.svg │ │ │ ├── reload_backend.svg │ │ │ ├── reload_config.svg │ │ │ └── settings.svg │ ├── plotdata.py │ ├── recorder.py │ ├── ringbuffer.py │ ├── ui │ │ ├── __init__.py │ │ ├── add_backend.py │ │ ├── add_backend.ui │ │ ├── data_window.py │ │ ├── image_view.py │ │ ├── image_view.ui │ │ ├── image_window.py │ │ ├── image_window.ui │ │ ├── image_window_settings.py │ │ ├── image_window_settings.ui │ │ ├── line_plot_settings.py │ │ ├── line_plot_settings.ui │ │ ├── main_window.ui │ │ ├── pg_time_axis.py │ │ ├── plot_window.py │ │ ├── plot_window.ui │ │ ├── plotdata_table.py │ │ ├── preferences.py │ │ ├── preferences.ui │ │ └── sounds │ │ │ ├── beamline.wav │ │ │ ├── beep.wav │ │ │ ├── click.wav │ │ │ ├── glass.wav │ │ │ ├── punch.wav │ │ │ ├── sharp.wav │ │ │ └── whack.wav │ ├── zmqcontext.py │ └── zmqsocket.py ├── ipc │ ├── __init__.py │ ├── broadcast.py │ ├── influx.py │ ├── mpi.py │ └── zmqserver.py ├── plotting │ ├── __init__.py │ ├── correlation.py │ ├── histogram.py │ ├── image.py │ └── line.py ├── pylintrc ├── simulation │ ├── __init__.py │ ├── base.py │ ├── condor.py │ ├── fromfile.py │ ├── ptycho.py │ ├── simulated_tof.py │ └── test_object.npy └── utils │ ├── __init__.py │ ├── array.py │ ├── cmdline_args.py │ ├── cxiwriter.py │ ├── io.py │ ├── lclstime.py │ ├── log.py │ ├── reader.py │ ├── recorder.py │ └── stack.py ├── scripts ├── flash │ ├── average.py │ ├── camera.py │ ├── camera_convolution.py │ ├── convert_dark.sh │ ├── convert_darkcal.py │ ├── fetch_data.py │ ├── mount_flash_mnt │ ├── plot_hitscores.py │ ├── record_daq.sh │ ├── submit_preproc.py │ ├── tof.py │ ├── tof_plot │ │ ├── gmd_histograms.py │ │ └── tof_z_scan_2.py │ ├── tof_proc.py │ └── umount_flash_mnt ├── masking │ ├── combineMasks.py │ ├── mask.conf │ ├── mask.py │ ├── pngToH5Mask.py │ └── stackToPng.py └── offline_davinci │ ├── 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