├── .gitignore ├── .gitlab-ci.yml ├── .gitmodules ├── AUTHORS ├── CITATION.cff ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── RELEASE_NOTES ├── bin ├── jube └── jube-autorun ├── contrib └── schema │ ├── jube.dtd │ ├── jube.json │ ├── jube.rnc │ └── jube.xsd ├── devel-utils ├── flake8 └── pylint.rc ├── docs ├── JUBE.pdf ├── Makefile ├── advanced.rst ├── commandline.rst ├── conf.py ├── devel.rst ├── faq.rst ├── glossar.rst ├── index.rst ├── index_user.rst ├── introduction.rst ├── jube.result_types.rst ├── jube.rst ├── jube.util.rst ├── logo │ ├── JUBE-Logo.eps │ ├── JUBE-Logo.png │ └── JUBE-Logo.svg ├── release_notes.rst ├── tutorial.rst └── update_python_docu.sh ├── examples ├── cycle │ ├── cycle.xml │ └── cycle.yaml ├── dependencies │ ├── dependencies.xml │ └── dependencies.yaml ├── do_log │ ├── do_log.xml │ ├── do_log.yaml │ ├── loreipsum1 │ ├── loreipsum2 │ ├── loreipsum3 │ ├── loreipsum4 │ └── loreipsum5 ├── duplicate │ ├── duplicate.xml │ └── duplicate.yaml ├── environment │ ├── environment.xml │ └── environment.yaml ├── files_and_sub │ ├── file.in │ ├── files_and_sub.xml │ └── files_and_sub.yaml ├── hello_world │ ├── hello_world.xml │ └── hello_world.yaml ├── include │ ├── include_data.xml │ ├── include_data.yaml │ ├── main.xml │ └── main.yaml ├── iterations │ ├── iterations.xml │ └── iterations.yaml ├── jobsystem │ ├── job.run.in │ ├── jobsystem.xml │ └── jobsystem.yaml ├── parallel_workpackages │ ├── parallel_workpackages.xml │ └── parallel_workpackages.yaml ├── parameter_dependencies │ ├── include_file.xml │ ├── include_file.yaml │ ├── parameter_dependencies.xml │ └── parameter_dependencies.yaml ├── parameter_update │ ├── parameter_update.xml │ └── parameter_update.yaml ├── parameterspace │ ├── parameterspace.xml │ └── parameterspace.yaml ├── result_creation │ ├── result_creation.xml │ └── result_creation.yaml ├── result_database │ ├── result_database.xml │ ├── result_database.yaml │ └── result_database_filter.xml ├── scripting_parameter │ ├── scripting_parameter.xml │ └── scripting_parameter.yaml ├── scripting_pattern │ ├── scripting_pattern.xml │ └── scripting_pattern.yaml ├── shared │ ├── shared.xml │ └── shared.yaml ├── statistic │ ├── statistic.xml │ └── statistic.yaml ├── tagging │ ├── tagging.xml │ └── tagging.yaml └── yaml │ ├── hello_world.yaml │ └── special_values.yaml ├── jube ├── __init__.py ├── analyser.py ├── benchmark.py ├── completion.py ├── conf.py ├── fileset.py ├── help.py ├── help.txt ├── info.py ├── jubeio.py ├── log.py ├── main.py ├── parameter.py ├── pattern.py ├── result.py ├── result_types │ ├── __init__.py │ ├── database.py │ ├── genericresult.py │ ├── keyvaluesresult.py │ ├── syslog.py │ └── table.py ├── step.py ├── substitute.py ├── util │ ├── __init__.py │ ├── output.py │ ├── util.py │ ├── version.py │ └── yaml_converter.py └── workpackage.py ├── platform ├── lsf │ ├── platform.xml │ └── submit.job.in ├── moab │ ├── chainJobs.sh │ ├── platform.xml │ └── submit.job.in ├── pbs │ ├── chainJobs.sh │ ├── platform.xml │ └── submit.job.in └── slurm │ ├── chainJobs.sh │ ├── platform.xml │ └── submit.job.in ├── setup.py └── tests ├── benchmark_tests.py ├── conf_tests.py ├── example_tests ├── example_cycle_tests.py ├── example_dependencies_tests.py ├── example_do_log_tests.py ├── example_duplicate_tests.py ├── example_environment_tests.py ├── example_files_and_sub_tests.py ├── example_hello_world_tests.py ├── example_include_tests.py ├── example_iterations_tests.py ├── example_parameter_dependencies_tests.py ├── example_parameter_update_tests.py ├── example_parameterspace_tests.py ├── example_result_creation_tests.py ├── example_result_database_tests.py ├── example_scripting_parameter_tests.py ├── example_scripting_pattern_tests.py ├── example_shared_tests.py ├── example_statistic_tests.py └── example_tagging_tests.py ├── examples_result_output ├── iterations │ └── result.dat ├── result_creation │ └── result.dat ├── scripting_pattern │ └── result.dat └── 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