├── .Rbuildignore ├── .Rhistory ├── .github ├── .gitignore └── workflows │ └── pkgdown.yaml ├── .gitignore ├── CITATION.cff ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── DrawSyntenyPlot.R ├── SyntenyPlotteR-package.R └── reformat.syntenyData.R ├── README.md ├── _pkgdown.yml ├── cran-comments.md ├── inst ├── CITATION ├── README.Rmd └── extdata │ ├── example_alignment_1.txt │ ├── example_alignment_2.txt │ ├── example_alignment_3.txt │ ├── example_eh_alignments.txt │ ├── example_eh_alignments_2.txt │ ├── example_lengths.txt │ ├── example_map_1.map │ ├── example_map_2.map │ └── example_map_3.map ├── man ├── draw.eh.Rd ├── draw.ideogram.Rd ├── draw.linear.Rd ├── figures │ ├── example.alignment.input.png │ ├── example.deshrambler.output.png │ ├── example.eh.input.png │ ├── example.ideogram.png │ ├── example.lengths.input.png │ ├── example_eh.png │ └── example_linear.png ├── reformat.syntenyData.Rd └── syntenyPlotteR-package.Rd ├── syntenyPlotteR.Rproj └── 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