├── .gitignore ├── README.md ├── Task_1 ├── .gitattributes ├── .gitignore ├── FeTS_Challenge.py ├── LICENSE ├── MANIFEST.in ├── README.md ├── fets_challenge │ ├── __init__.py │ ├── checkpoint_utils.py │ ├── custom_aggregation_wrapper.py │ ├── experiment.py │ ├── gandlf_csv_adapter.py │ ├── inference.py │ ├── pretrained_model │ │ └── resunet_pretrained.pth │ └── spec_sens_code.py ├── openfl-workspace │ └── fets_challenge_workspace │ │ ├── partitioning_1.csv │ │ ├── partitioning_2.csv │ │ ├── plan │ │ ├── cols.yaml │ │ ├── data.yaml │ │ ├── defaults │ │ └── plan.yaml │ │ ├── requirements.txt │ │ ├── small_split.csv │ │ ├── smaller_split.csv │ │ ├── src │ │ ├── __init__.py │ │ ├── challenge_assigner.py │ │ └── fets_challenge_model.py │ │ └── validation.csv ├── plans │ ├── cla_plan.yaml │ └── seg_plan.yaml ├── setup.py └── utils │ └── inspect_pickled_model.py ├── Task_2 ├── LICENSE ├── README.md ├── mlcubes │ ├── data_prep │ │ ├── mlcube │ │ │ ├── mlcube.yaml │ │ │ └── workspace │ │ │ │ └── parameters.yaml │ │ ├── project │ │ │ ├── Dockerfile │ │ │ ├── __init__.py │ │ │ ├── mlcube.py │ │ │ ├── prepare.py │ │ │ ├── requirements.txt │ │ │ ├── sanity_check.py │ │ │ └── statistics.py │ │ └── tests │ │ │ └── test_data_prep.py │ ├── metrics │ │ ├── mlcube │ │ │ ├── mlcube.yaml │ │ │ └── workspace │ │ │ │ └── parameters.yaml │ │ └── project │ │ │ ├── Dockerfile │ │ │ ├── app.py │ │ │ ├── mlcube.py │ │ │ └── requirements.txt │ └── model │ │ ├── README.md │ │ ├── mlcube │ │ ├── mlcube.yaml │ │ └── workspace │ │ │ └── output │ │ │ ├── .dockerignore │ │ │ └── .gitignore │ │ └── project │ │ ├── Dockerfile │ │ ├── LICENSE │ │ ├── mlcube.py │ │ ├── model_ckpts │ │ └── example.ckpt │ │ ├── parameters.yaml │ │ ├── requirements.txt │ │ └── src │ │ ├── __init__.py │ │ ├── my_logic.py │ │ └── utils │ │ ├── __init__.py │ │ └── utilities.py └── ranking │ ├── compute_ranking.R │ ├── example_data.yaml │ └── readme.md ├── docs ├── .gitignore ├── Gemfile ├── Gemfile.lock ├── _config.yml ├── _data │ ├── callouts.yaml │ ├── footer.yaml │ └── navigation.yaml ├── _layouts │ └── default.html ├── _pages │ ├── 404.html │ ├── contact.md │ ├── data.md │ ├── faq.md │ ├── index.md │ ├── miccai.md │ ├── participate.md │ ├── people.md │ ├── results.md │ └── tasks.md ├── _posts │ └── 2021-05-17-welcome-to-jekyll.markdown ├── assets │ └── css │ │ └── app.scss └── img │ ├── Alex_Karagyris_Headshot.jpg │ ├── fets-logo.png │ ├── fets_winner_slide.jpg │ ├── intel_logo.png │ ├── miccai2021-logo.png │ ├── panel_slide.png │ ├── partition_natural.png │ ├── partition_tumorsize.png │ └── umeto.jpg └── paper_analysis ├── LICENSE ├── make_main_figures.py ├── plots_task1.py ├── plots_task2.py ├── requirements.txt └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FeTS-AI/Challenge/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: 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