├── README.md ├── general_params ├── area_shank_info.p ├── general_params.p └── make_general_params_file.py ├── manifold_and_decoding ├── decode_from_saved_fit.py ├── run_dimensionality_reduction.py ├── run_persistent_homology.py ├── run_spud_interactive.py └── run_spud_multiple_tests.py ├── read_in_data ├── .DS_Store ├── data_read_fns.py ├── preprocess_raw_data.py └── rate_functions.py └── shared_scripts ├── .DS_Store ├── angle_fns.py ├── binned_spikes_class.py ├── dim_red_fns.py ├── distribution_fns.py ├── fit_helper_fns.py ├── general_file_fns.py ├── manifold_fit_and_decode_fns.py └── sweep_fns.py /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/README.md -------------------------------------------------------------------------------- /general_params/area_shank_info.p: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/general_params/area_shank_info.p -------------------------------------------------------------------------------- /general_params/general_params.p: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/general_params/general_params.p -------------------------------------------------------------------------------- /general_params/make_general_params_file.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/general_params/make_general_params_file.py -------------------------------------------------------------------------------- /manifold_and_decoding/decode_from_saved_fit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/manifold_and_decoding/decode_from_saved_fit.py -------------------------------------------------------------------------------- /manifold_and_decoding/run_dimensionality_reduction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/manifold_and_decoding/run_dimensionality_reduction.py -------------------------------------------------------------------------------- /manifold_and_decoding/run_persistent_homology.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/manifold_and_decoding/run_persistent_homology.py -------------------------------------------------------------------------------- /manifold_and_decoding/run_spud_interactive.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/manifold_and_decoding/run_spud_interactive.py -------------------------------------------------------------------------------- /manifold_and_decoding/run_spud_multiple_tests.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/manifold_and_decoding/run_spud_multiple_tests.py -------------------------------------------------------------------------------- /read_in_data/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/read_in_data/.DS_Store -------------------------------------------------------------------------------- /read_in_data/data_read_fns.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/read_in_data/data_read_fns.py -------------------------------------------------------------------------------- /read_in_data/preprocess_raw_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/read_in_data/preprocess_raw_data.py -------------------------------------------------------------------------------- /read_in_data/rate_functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/read_in_data/rate_functions.py -------------------------------------------------------------------------------- /shared_scripts/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/shared_scripts/.DS_Store -------------------------------------------------------------------------------- /shared_scripts/angle_fns.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/shared_scripts/angle_fns.py -------------------------------------------------------------------------------- /shared_scripts/binned_spikes_class.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/shared_scripts/binned_spikes_class.py -------------------------------------------------------------------------------- /shared_scripts/dim_red_fns.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/shared_scripts/dim_red_fns.py -------------------------------------------------------------------------------- /shared_scripts/distribution_fns.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/shared_scripts/distribution_fns.py -------------------------------------------------------------------------------- /shared_scripts/fit_helper_fns.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/shared_scripts/fit_helper_fns.py -------------------------------------------------------------------------------- /shared_scripts/general_file_fns.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/shared_scripts/general_file_fns.py -------------------------------------------------------------------------------- /shared_scripts/manifold_fit_and_decode_fns.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/shared_scripts/manifold_fit_and_decode_fns.py -------------------------------------------------------------------------------- /shared_scripts/sweep_fns.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FieteLab/SPUD_Analysis-of-manifold-structure-in-head-direction-data/HEAD/shared_scripts/sweep_fns.py --------------------------------------------------------------------------------