├── LOPOTuneTrain.ipynb ├── LOPO_10xCV.ipynb ├── LOPO_predict_missingFeatureMuts.ipynb ├── LOPO_unnormalized.ipynb ├── README.txt ├── data ├── EVmutation_TP53.csv ├── P53_correlationByAminoAcid.csv ├── P53_correlationByAminoAcid_WT.csv ├── clinvar_predicted_2017-03-21.csv ├── dmsTraining_2017-02-20.csv ├── mutagenesisSet_annotated.csv └── pab1_out.csv ├── downSamplingAnalysis.ipynb ├── envisionTuneTrainPredict.ipynb ├── envision_figure_code.Rmd ├── envision_figure_code.html └── singleProteinModels.ipynb /LOPOTuneTrain.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FowlerLab/Envision2017/HEAD/LOPOTuneTrain.ipynb -------------------------------------------------------------------------------- /LOPO_10xCV.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/FowlerLab/Envision2017/HEAD/LOPO_10xCV.ipynb 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