├── .copier └── {{project_name}} │ └── .gitignore ├── .gitignore ├── .gitlab-ci.yml ├── .gitlab └── merge_request_templates │ └── merge_request_qa_level_1.md ├── CHANGELOG.md ├── README.md ├── copier_template ├── copier.yml └── {{project_name}} │ ├── .devcontainer │ └── devcontainer.json.jinja │ ├── .vscode │ ├── settings.json │ └── tasks.json │ ├── inference.ipynb │ ├── job_configs │ └── quickstart.jsonc │ └── quickstart.ipynb ├── docker-compose.yml ├── docker ├── mmm-app │ └── Dockerfile ├── mmm-base │ ├── Dockerfile │ └── requirements.txt └── mmm-stack │ └── Dockerfile ├── docs ├── Makefile ├── local_env_vars.png ├── make.bat └── source │ ├── _static │ └── placeholder_for_git.md │ ├── _templates │ └── placeholder_for_git.md │ ├── conf.py │ ├── contribution.rst │ └── index.rst ├── license.md ├── mmm ├── BaseModel.py ├── DataSplit.py ├── __init__.py ├── app.py ├── augmentations.py ├── bucketizing.py ├── data_loading │ ├── ClassificationDataset.py │ ├── DetectionDataset.py │ ├── DiskDataset.py │ ├── DistributedPath.py │ ├── ImageCaptionDataset.py │ ├── ImageGenerationDataset.py │ ├── MTLDataset.py │ ├── MultiLabelSemSegDataset.py │ ├── MultilabelClassificationDataset.py │ ├── MultipleInstanceDataset.py │ ├── RegressionDataset.py │ ├── SemSegDataset.py │ ├── TrainValCohort.py │ ├── __init__.py │ ├── geojson │ │ ├── AnnoFilterConfig.py │ │ ├── GeoAnno.py │ │ ├── GeojsonObjWindows.py │ │ ├── GeojsonRegionWindows.py │ │ ├── NoUsefulWindowException.py │ │ ├── WSIGeojsonDataset.py │ │ ├── __init__.py │ │ └── utils.py │ ├── medical │ │ ├── __init__.py │ │ └── wsi_service.py │ ├── non_medical │ │ └── __init__.py │ ├── s3.py │ ├── ssl.py │ ├── synthetic │ │ ├── __init__.py │ │ ├── artifact.py │ │ ├── mockup.py │ │ └── shape_dataset.py │ └── utils.py ├── event_selectors.py ├── inference_app.py ├── interactive │ ├── __init__.py │ ├── blocks.py │ ├── configs.py │ ├── data.py │ ├── pipes.py │ ├── tasks.py │ ├── training.py │ └── utils.py ├── labelstudio_ext │ ├── DLModel.py │ ├── LGBModel.py │ ├── LSDataset.py │ ├── LSModel.py │ ├── LabelstudioCredentials.py │ ├── NativeBlocks.py │ ├── __init__.py │ ├── projects.py │ └── utils.py ├── logging │ ├── __init__.py │ ├── st_ext.py │ ├── type_ext.py │ └── wandb_ext.py ├── mtl_modules │ ├── MTLModule.py │ ├── __init__.py │ ├── shared_blocks │ │ ├── FCOSDecoder.py │ │ ├── Grouper.py │ │ ├── MTLDecoder.py │ │ ├── PyramidDecoder.py │ │ ├── PyramidEncoder.py │ │ ├── SharedBlock.py │ │ ├── SharedModules.py │ │ ├── Squeezer.py │ │ ├── TaskSpecificLayer.py │ │ ├── TextEmbedder.py │ │ └── __init__.py │ └── tasks │ │ ├── ClassificationTask.py │ │ ├── ImageGenerationTask.py │ │ ├── MTLTask.py │ │ ├── MultilabelClassificationTask.py │ │ ├── RegressionTask.py │ │ ├── SemSegTask.py │ │ ├── SurvivalPredictionTask.py │ │ ├── TaskModule.py │ │ ├── __init__.py │ │ └── mmDetectionTask.py ├── mtl_types.py ├── neural │ ├── TorchModule.py │ ├── __init__.py │ ├── activations.py │ ├── layers.py │ ├── losses.py │ ├── model_protocols.py │ ├── module_conversions.py │ ├── modules │ │ ├── TimmEncoder.py │ │ ├── TorchVisionCNN.py │ │ ├── __init__.py │ │ ├── convnext.py │ │ ├── simple_cnn.py │ │ ├── simple_linear.py │ │ ├── smp_modules.py │ │ └── swinformer.py │ └── pooling.py ├── nic_utility.py ├── nomad_ext.py ├── optimization │ ├── MTLOptimizer.py │ └── __init__.py ├── resources │ ├── annotatedimage.jinja2 │ ├── jsonform.jinja2 │ ├── lgbmodel_expertinstruction.jinja2 │ └── lgbmodel_status.jinja2 ├── settings.py ├── sklearn_segmentation.py ├── task_sampling.py ├── torch_ext.py ├── traditional_ml.py ├── trainer │ ├── CallbackType.py │ ├── Loop.py │ ├── MTLTrainer.py │ ├── TaskPurpose.py │ └── __init__.py ├── transforms.py ├── typing_utils.py └── utils.py ├── poetry.lock ├── pyproject.toml ├── read_version.py ├── rebuild-docs.sh ├── tests ├── __init__.py ├── conftest.py ├── data_loading │ ├── __init__.py │ ├── test_mtl_datasets.py │ └── test_utils.py ├── geojson │ ├── __init__.py │ └── test_geojson.py 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