├── .gitattributes ├── .gitignore ├── PatchMAN_protocol.py ├── PatchMAN_protocol_dask.py ├── PatchMAN_small.png ├── README.md ├── bin ├── __pycache__ │ └── rosetta_protocols.cpython-35.pyc.140030883718320 ├── chain_filter.py ├── cluster.py ├── cluster.sh ├── dask_protocol_utils.py ├── download_all_pdbs.sh ├── download_pdbs.py ├── extract_peps_for_motif.py ├── fpd.py ├── fpd.sh ├── master.patch ├── prepack_receptor.py ├── prepare_input.sh ├── printScoreFile_byHeader.py ├── protocol_utils.py ├── pyrosetta_utils.py ├── rosetta_protocols.py ├── run_extract_templates.sh ├── run_master.sh └── split_to_motifs.py ├── create_env.sh ├── download_data.sh ├── environment.yml └── test_pdbs ├── 1OOT_A.pdb ├── 1oot_focus.pdb └── 1oot_mask.pdb /.gitattributes: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /.gitignore: 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