├── .github └── workflows │ ├── ALL-testMigratePublic.yml │ ├── ALL-testMigrateTripal.yml │ ├── MAIN-buildDocker.yml │ └── PRs-buildDocker.yml ├── .gitignore ├── .travis.yml ├── LICENSE ├── README.md ├── chado └── migrations │ ├── V1.3.3.002__add_db_relationship_table.sql │ ├── V1.3.3.003__alter_analysis_unique_constraint.sql │ ├── V1.3.3.004__add_synoynm_indices_cvtermsynonym.sql │ ├── V1.3.3.005__add_type_id_2_project_table.sql │ ├── V1.3.3.006__modify_mage.sql │ ├── V1.3.3.007__fix_search_path.sql │ ├── V1.3.3.008__add_is_obsolete_cell_line_table.sql │ ├── V1.3.3.009__update_analysis_desc.sql │ ├── V1.3.3.011__fix_db_relationship_type_id.sql │ └── V1.3.3.013__add_type_id_to_contact_and_project_linkers.sql ├── docker ├── Dockerfile ├── entrypoint.sh ├── flyway.toml └── motd ├── docs ├── Makefile ├── _static │ └── theme_overrides.css ├── best_practices.rst ├── conf.py ├── contributing.rst ├── contributing │ └── PR_guidelines.rst ├── index.rst ├── installation.rst ├── make.bat ├── modules.rst ├── modules │ ├── audit.rst │ ├── companalysis.rst │ ├── contact.rst │ ├── cv.rst │ ├── expression.rst │ ├── general.rst │ ├── genetic.rst │ ├── library.rst │ ├── mage.rst │ ├── map.rst │ ├── nd.rst │ ├── organism.rst │ ├── phenotype.rst │ ├── phylogeny.rst │ ├── pub.rst │ ├── sequence.rst │ ├── stock.rst │ └── www.rst ├── schema_definition.rst └── using_flyway.rst ├── entrypoint.sh ├── migrations └── V1.3.3.001__add_stock_biomat_table.sql └── schemas ├── 1 └── default_schema.sql ├── 1-1.1 ├── diff └── diff.sql ├── 1-1.11 ├── diff └── diff.sql ├── 1-1.2 └── diff.sql ├── 1-1.21 └── diff.sql ├── 1-1.22 └── diff.sql ├── 1-1.23 └── diff.sql ├── 1-1.31 └── diff.sql ├── 1.1-1.2 ├── diff └── diff.sql ├── 1.1-1.21 ├── diff └── diff.sql ├── 1.1-1.22 └── diff.sql ├── 1.1-1.23 └── diff.sql ├── 1.1-1.31 └── diff.sql ├── 1.1 └── default_schema.sql ├── 1.11-1.2 ├── diff └── diff.sql ├── 1.11-1.21 ├── diff └── diff.sql ├── 1.11-1.22 └── diff.sql ├── 1.11-1.23 └── diff.sql ├── 1.11-1.31 └── diff.sql ├── 1.11 └── default_schema.sql ├── 1.2-1.21 └── diff.sql ├── 1.2-1.22 └── diff.sql ├── 1.2-1.23 └── diff.sql ├── 1.2-1.31 └── diff.sql ├── 1.2 └── default_schema.sql ├── 1.21-1.22 └── diff.sql ├── 1.21-1.23 └── diff.sql ├── 1.21-1.31 └── diff.sql ├── 1.21 └── default_schema.sql ├── 1.22-1.23 └── diff.sql ├── 1.22-1.31 └── diff.sql ├── 1.22 └── default_schema.sql ├── 1.23-1.31 └── diff.sql ├── 1.23 └── default_schema.sql ├── 1.31-1.41 └── diff.sql ├── 1.31 └── default_schema.sql ├── 1.4 └── default_schema.sql └── generate_diff_dirs.pl /.github/workflows/ALL-testMigratePublic.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GMOD/Chado/HEAD/.github/workflows/ALL-testMigratePublic.yml -------------------------------------------------------------------------------- /.github/workflows/ALL-testMigrateTripal.yml: -------------------------------------------------------------------------------- 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