├── .DS_Store ├── .gitignore ├── LICENSE.md ├── README.md ├── docs ├── create.html ├── css │ ├── demos.css │ ├── flareplot-atomic-pv.css │ ├── flareplot-fingerprintpanel.css │ ├── flareplot-main.css │ ├── flareplot-rangeslider.css │ ├── flareplot-selectors.css │ ├── frontpage.css │ └── top7_minimal.css ├── demos_compare │ ├── gpcr_interactome-fingerprint_demo.html │ ├── gpcr_interactome_demo.html │ ├── gpcr_interactome_newpanel.html │ ├── muscarinic_receptor_demo.html │ ├── opioid_receptor_demo.html │ └── opr_hbss_ngl.html ├── demos_time │ ├── mor_demo.html │ ├── mor_side-by-side.html │ ├── top7_demo.html │ └── top7_minimal.html ├── gpcr_demo.html ├── img │ ├── example_brain.png │ ├── example_mor.png │ ├── example_top7.png │ ├── examples │ │ ├── degree_example.gif │ │ ├── gpcr_example.gif │ │ ├── interaction_example1.gif │ │ ├── interaction_example2.gif │ │ ├── mor_example.gif │ │ ├── oldgpcr_example.gif │ │ └── salt_example.gif │ ├── favicon.png │ ├── favicon.svg │ ├── flare-faded.png │ ├── flare-faded.svg │ ├── flare-faded_smaller.png │ ├── workflow.png │ └── workflow.svg ├── index.html ├── js │ ├── flareplot-atomic-pv.js │ ├── flareplot-comparepanel.js │ ├── flareplot-comparepanel_old.js │ ├── flareplot-fingerprintpanel.js │ ├── flareplot-main.js │ ├── flareplot-pv.js │ ├── flareplot-rangeslider.js │ ├── flareplot-selectors.js │ ├── frontpage.js │ └── rangeslider.js ├── resources │ ├── 3uon_wloop.pdb │ ├── 4dkl_wloop.pdb │ ├── 4n6h_wloop.pdb │ ├── 5c1m.pdb │ ├── conserved_inactive_network.json │ ├── gpcr_brain.json │ ├── intersect_test.json │ ├── mor-active-rep1-wb.json │ ├── mor-active-rep1-wb_noloops.json │ ├── mor-active-rep1-wb_small.json │ ├── mor_active_bu72.nc.json │ ├── muscarinic │ │ ├── networks │ │ │ ├── hbbb.json │ │ │ ├── hbsb.json │ │ │ ├── hbss.json │ │ │ ├── hls.json │ │ │ ├── lwb.json │ │ │ ├── lwb2.json │ │ │ ├── sb.json │ │ │ ├── vdw.json │ │ │ ├── wb.json │ │ │ └── wb2.json │ │ └── structures │ │ │ ├── ACM1_HUMAN_5CXV_A.pdb │ │ │ ├── ACM2_HUMAN_3UON_A.pdb │ │ │ ├── ACM3_RAT_4DAJ_A.pdb │ │ │ └── ACM4_HUMAN_5DSG_B.pdb │ ├── old │ │ ├── gpcr_brain_interactome_clustered_degree_centrality.json │ │ ├── gpcr_brain_interactome_clustered_degree_centrality_inter.json │ │ ├── gpcr_brain_interactome_degree_centrality.json │ │ ├── gpcr_interactome_uniprot.json │ │ └── gpcr_interactome_uniprot_clustered.json │ ├── opioid │ │ ├── networks │ │ │ ├── hbbb.json │ │ │ ├── hbsb.json │ │ │ ├── hbss.json │ │ │ ├── hls.json │ │ │ ├── lwb.json │ │ │ ├── lwb2.json │ │ │ ├── sb.json │ │ │ ├── vdw.json │ │ │ ├── wb.json │ │ │ └── wb2.json │ │ └── structures │ │ │ ├── hadded │ │ │ ├── OPRD_HUMAN_4N6H_A.pdb │ │ │ ├── OPRK_HUMAN_4DJH_A.pdb │ │ │ └── OPRM_MOUSE_4DKL_A.pdb │ │ │ └── noh │ │ │ ├── OPRD_HUMAN_4N6H_A.pdb │ │ │ ├── OPRK_HUMAN_4DJH_A.pdb │ │ │ └── OPRM_MOUSE_4DKL_A.pdb │ ├── salt_bridges.json │ └── top7_mcmc.json ├── tables │ └── uniprot_to_gpcrdb.json └── vendor │ ├── bootstrap │ ├── css │ │ ├── bootstrap.css │ │ └── bootstrap.min.css │ ├── fonts │ │ ├── glyphicons-halflings-regular.eot │ │ ├── glyphicons-halflings-regular.svg │ │ ├── glyphicons-halflings-regular.ttf │ │ ├── glyphicons-halflings-regular.woff │ │ └── glyphicons-halflings-regular.woff2 │ └── js │ │ ├── bootstrap.js │ │ └── bootstrap.min.js │ ├── d3 │ ├── d3.min.js │ └── d3.v3.min.js │ ├── font-awesome │ ├── css │ │ ├── font-awesome.css │ │ └── font-awesome.min.css │ ├── fonts │ │ ├── FontAwesome.otf │ │ ├── fontawesome-webfont.eot │ │ ├── fontawesome-webfont.svg │ │ ├── fontawesome-webfont.ttf │ │ ├── fontawesome-webfont.woff │ │ └── fontawesome-webfont.woff2 │ ├── less │ │ ├── animated.less │ │ ├── bordered-pulled.less │ │ ├── core.less │ │ ├── fixed-width.less │ │ ├── font-awesome.less │ │ ├── icons.less │ │ ├── larger.less │ │ ├── list.less │ │ ├── mixins.less │ │ ├── path.less │ │ ├── rotated-flipped.less │ │ ├── screen-reader.less │ │ ├── stacked.less │ │ └── variables.less │ └── scss │ │ ├── _animated.scss │ │ ├── _bordered-pulled.scss │ │ ├── _core.scss │ │ ├── _fixed-width.scss │ │ ├── _icons.scss │ │ ├── _larger.scss │ │ ├── _list.scss │ │ ├── _mixins.scss │ │ ├── _path.scss │ │ ├── _rotated-flipped.scss │ │ ├── _screen-reader.scss │ │ ├── _stacked.scss │ │ ├── _variables.scss │ │ └── font-awesome.scss │ ├── jquery │ ├── jquery.js │ └── jquery.min.js │ └── pv │ └── pv.min.js ├── embedding ├── README.md ├── abc.json ├── minimum.html └── minimum_file.html ├── flareplot-main.css ├── flareplot-main.js ├── flareplot-rangeslider.css ├── flareplot-rangeslider.js └── input ├── README.md ├── examples ├── edgefrequencies │ ├── 5xnd_topology.pdb │ ├── 5xnd_trajectory.dcd │ ├── README.md │ └── generate_flare.sh ├── highpass │ ├── 5xnd_topology.pdb │ ├── 5xnd_trajectory.dcd │ ├── README.md │ └── generate_flare.sh ├── multiflare │ ├── .gitignore │ ├── 4KJJ.pdb │ ├── 4KJK.pdb │ ├── 4KJL.pdb │ ├── README.md │ └── generate_flare.sh └── timeflare │ ├── .gitignore │ ├── 5xnd_topology.pdb │ ├── 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