├── .gitattributes ├── .github └── workflows │ ├── build_and_push_docker.yml │ ├── build_and_test.yml │ ├── create_docker_latest_tag_on_release.yml │ ├── deploy_documentation.yaml │ └── publish_to_pypi.yml ├── .gitignore ├── .vscode └── settings.json ├── LICENSE ├── MANIFEST.in ├── Notebooks ├── 01-GettingStarted.ipynb ├── 02-PlateReconstructions.ipynb ├── 03-WorkingWithPoints.ipynb ├── 04-VelocityBasics.ipynb ├── 05-WorkingWithFeatureGeometries.ipynb ├── 06-Rasters.ipynb ├── 07-WorkingWithPlateTectonicStats.ipynb ├── 08-PredictingSlabFlux.ipynb ├── 09-CreatingMotionPathsAndFlowlines.ipynb ├── 10-SeafloorGrids.ipynb ├── 11-AndesFluxes.ipynb ├── 12-MutschlerWorldPorphyryCopperDepositsRegionalPlots.ipynb ├── 13-ReconstructingZirconData.ipynb ├── Examples │ ├── Holm_et_al_2019_Table_1_ed.csv │ ├── PNG_reconstruction_copper_deposits.ipynb │ ├── data_server.py │ ├── hello_world.ipynb │ ├── hello_world.py │ ├── icosahedron_mesh.ipynb │ ├── introducing_plate_model_manager.ipynb │ ├── introducing_plate_model_manager.py │ ├── plot_map_with_cartopy.ipynb │ ├── plot_map_with_cartopy.py │ ├── plot_map_with_pygmt.ipynb │ ├── plot_map_with_pygmt.py │ ├── ptt │ │ ├── data │ │ │ ├── CO2_0.nc │ │ │ ├── CO2_1.nc │ │ │ ├── Global_EarthByte_230-0Ma_GK07_AREPS.rot │ │ │ ├── Global_EarthByte_230-0Ma_GK07_AREPS_PlateBoundaries.gpmlz │ │ │ ├── Global_EarthByte_230-0Ma_GK07_AREPS_Topology_BuildingBlocks.gpmlz │ │ │ └── Matthews_etal_GPC_2016_Coastlines.gpmlz │ │ └── notebooks │ │ │ ├── plot_velocity_vectors.ipynb │ │ │ ├── predict_using_chebyshev_2d.ipynb │ │ │ ├── ridge_length_spreading_rates.ipynb │ │ │ ├── sample_raster_along_subd_zone.ipynb │ │ │ ├── subduction_obliquity.ipynb │ │ │ └── subduction_teeth.ipynb │ ├── readme.md │ ├── reconstruct_files.ipynb │ ├── save_reconstructed_data.ipynb │ ├── save_reconstructed_data.py │ ├── use_auxiliary_functions.ipynb │ ├── use_auxiliary_functions.py │ ├── use_your_own_plate_model.ipynb │ └── working_with_plate_model_manager.py ├── NotebookFiles │ ├── .gitignore │ ├── Cao2024_SEAFLOOR_AGE_grid_0.00Ma.nc │ ├── GMT_wysiwyg.cpt │ ├── Global_EarthByte_GeeK07_COB_Terranes_2019_v2.gpml │ ├── Muller2019_GlobalAveragePlateVelocities_0-250Ma.csv │ ├── Muller2019_PlateTectonicStats_0-50_Ma.csv │ ├── Muller_etal_2019_PlateMotionModel_v2.0_Tectonics │ │ ├── Alps_Deforming_Mesh_2019_v2.gpml │ │ ├── Alps_Mesh_Rotations_2019_v2.rot │ │ ├── Alps_Mesh_Topologies_2019_v2.gpml │ │ ├── America_Anyui_Deforming_Mesh_2019_v2.gpml │ │ ├── America_Anyui_Mesh_Topologies_2019_v2.gpml │ │ ├── Andes_Deforming_Mesh_2019_v2.gpml │ │ ├── Andes_Flat_Slabs_Rotations_2019_v2.rot │ │ ├── Andes_Flat_Slabs_Topologies_2019_v2.gpml │ │ ├── Andes_Mesh_Topologies_2019_v2.gpml │ │ ├── Andes_Rotations_2019_v2.rot │ │ ├── Arctic_Eurasia_Deforming_Mesh_2019_v2.gpml │ │ ├── Arctic_Eurasia_Mesh_Topologies_2019_v2.gpml │ │ ├── Australia_Antarctica_Deforming_Mesh_2019_v2.gpml │ │ ├── Australia_Antarctica_Mesh_Rotations_2019_v2.rot │ │ ├── Australia_Antarctica_Mesh_Topologies_2019_v2.gpml │ │ ├── Australia_North_Zealandia_Deforming_Mesh_2019_v2.gpml │ │ ├── Australia_North_Zealandia_Mesh_Topologies_2019_v2.gpml │ │ ├── Australia_North_Zealandia_Rotations_2019_v2.rot │ │ ├── Baja_Deforming_Mesh_2019_v2.gpml │ │ ├── Coral_Sea_Deforming_Mesh_2019_v2.gpml │ │ ├── Coral_Sea_Topologies_2019_v2.gpml │ │ ├── East-West_Gondwana_Deforming_Mesh_and_Topologies_2019_v2.gpml │ │ ├── East_African_Rift_Deforming_Mesh_and_Topologies_2019_v2.gpml │ │ ├── Ellesmere__Deforming_Mesh_2019_v2.gpml │ │ ├── Eurasia_Arabia_Deforming_Mesh_and_Topologies_2019_v2.gpml │ │ ├── Eurasia_Arabia_Mesh_Rotations_2019_v2.rot │ │ ├── Global_250-0Ma_Rotations_2019_v2.rot │ │ ├── Global_410-250Ma_Rotations_2019_v2.rot │ │ ├── Global_Mesozoic-Cenozoic_PlateBoundaries_2019_v2.gpml │ │ ├── Global_Paleozoic_PlateBoundaries_2019_v2.gpml │ │ ├── Greater_India_Deforming_Mesh_2019_v2.gpml │ │ ├── Greater_India_Mesh_Topologies_2019_v2.gpml │ │ ├── Inactive_Meshes_and_Topologies_2019_v2.gpml │ │ ├── North_America_Flat_Slabs_Rotations_2019_v2.rot │ │ ├── North_America_Mesh_Rotations_2019_v2.rot │ │ ├── North_America_Mesh_Topologies_2019_v2.gpml │ │ ├── North_Atlantic_Deforming_Mesh_2019_v2.gpml │ │ ├── North_Atlantic_Mesh_Topologies_2019_v2.gpml │ │ ├── North_China_Deforming_Mesh_2019_v2.gpml │ │ ├── North_China_Mesh_Rotations_2019_v2.rot │ │ ├── North_China_Mesh_Topologies_2019_v2.gpml │ │ ├── Northern_Andes_Deforming_Mesh_2019_v2.gpml │ │ ├── Northern_Andes_Mesh_Topologies_2019_v2.gpml │ │ ├── Papua_New_Guinea_Deforming_Meshes_2019_v2.gpml │ │ ├── Papua_New_Guinea_Mesh_Topologies_2019_v2.gpml │ │ ├── Scotia_Deforming_Mesh_and_Topologies_2019_v2.gpml │ │ ├── Siberia_Eurasia_Deforming_Mesh_2019_v2.gpml │ │ ├── Siberia_Eurasia_Mesh_Topologies_2019_v2.gpml │ │ ├── South_Atlantic_Deforming_Mesh_2019_v2.gpml │ │ ├── South_Atlantic_Mesh_Topologies_2019_v2.gpml │ │ ├── South_Atlantic_Rotations_2019_v2.rot │ │ ├── South_China_Mesh_Topologies_2019_v2.gpml │ │ ├── South_China_Sea_Deforming_Mesh_2019_v2.gpml │ │ ├── South_Zealandia_Deforming_Mesh_2019_v2.gpml │ │ ├── South_Zealandia_Mesh_Topologies_2019_v2.gpml │ │ ├── Southeast_Asia_Deforming_Mesh_2019_v2.gpml │ │ ├── Southeast_Asia_Mesh_Topologies_2019_v2.gpml │ │ ├── Southeast_Asia_Rotations_2019_v2.rot │ │ ├── StaticGeometries │ │ │ ├── AgeGridInput │ │ │ │ ├── Global_EarthByte_GeeK07_COB_Terranes_2019_v2.gpml │ │ │ │ ├── Global_EarthByte_GeeK07_IsoCOB_2019_v2.gpml │ │ │ │ ├── Global_EarthByte_GeeK07_Isochrons_2019_v2.gpml │ │ │ │ └── Global_EarthByte_GeeK07_Ridges_2019_v2.gpml │ │ │ ├── COBLineSegments │ │ │ │ ├── Global_EarthByte_GeeK07_COBLineSegments_2019_v1.dbf │ │ │ │ ├── Global_EarthByte_GeeK07_COBLineSegments_2019_v1.gpmlz │ │ │ │ ├── Global_EarthByte_GeeK07_COBLineSegments_2019_v1.prj │ │ │ │ ├── Global_EarthByte_GeeK07_COBLineSegments_2019_v1.shp │ │ │ │ ├── Global_EarthByte_GeeK07_COBLineSegments_2019_v1.shp.gplates.xml │ │ │ │ └── Global_EarthByte_GeeK07_COBLineSegments_2019_v1.shx │ │ │ ├── Coastlines │ │ │ │ ├── Global_coastlines_2019_v1_low_res.dbf │ │ │ │ ├── Global_coastlines_2019_v1_low_res.prj │ │ │ │ ├── Global_coastlines_2019_v1_low_res.shp │ │ │ │ ├── Global_coastlines_2019_v1_low_res.shp.gplates.xml │ │ │ │ ├── Global_coastlines_2019_v1_low_res.shp.xml │ │ │ │ ├── Global_coastlines_2019_v1_low_res.shx │ │ │ │ └── Global_coastlines_2019_v1_low_res.xml │ │ │ ├── Coastlines_AREPS │ │ │ │ ├── Coastlines_USGS_MedRes_AREPS_polygon.dbf │ │ │ │ ├── Coastlines_USGS_MedRes_AREPS_polygon.gpmlz │ │ │ │ ├── Coastlines_USGS_MedRes_AREPS_polygon.prj │ │ │ │ ├── Coastlines_USGS_MedRes_AREPS_polygon.shp │ │ │ │ ├── Coastlines_USGS_MedRes_AREPS_polygon.shp.gplates.xml │ │ │ │ ├── Coastlines_USGS_MedRes_AREPS_polygon.shx │ │ │ │ ├── Coastlines_USGS_MedRes_AREPS_polyline.dbf │ │ │ │ ├── Coastlines_USGS_MedRes_AREPS_polyline.prj │ │ │ │ ├── Coastlines_USGS_MedRes_AREPS_polyline.shp │ │ │ │ └── Coastlines_USGS_MedRes_AREPS_polyline.shx │ │ │ ├── ContinentalPolygons │ │ │ │ ├── Global_EarthByte_GPlates_PresentDay_ContinentalPolygons_2019_v1.dbf │ │ │ │ ├── Global_EarthByte_GPlates_PresentDay_ContinentalPolygons_2019_v1.prj │ │ │ │ ├── Global_EarthByte_GPlates_PresentDay_ContinentalPolygons_2019_v1.shp │ │ │ │ ├── Global_EarthByte_GPlates_PresentDay_ContinentalPolygons_2019_v1.shp.gplates.xml │ │ │ │ ├── Global_EarthByte_GPlates_PresentDay_ContinentalPolygons_2019_v1.shp.xml │ │ │ │ └── Global_EarthByte_GPlates_PresentDay_ContinentalPolygons_2019_v1.shx │ │ │ ├── ContinentalStencils │ │ │ │ ├── Archean_fixed_poles_extended_No_Guyana.gpml │ │ │ │ ├── Blocks_crossing_Poles.rot │ │ │ │ ├── GreaterIndia.gpml │ │ │ │ ├── Phanerozoic_fixed_poles_Arriagada_new_extent.gpml │ │ │ │ └── Proterozoic_fixed_poles_extended_with_Guyana_Arriagada_new_extent.gpml │ │ │ ├── StaticPolygons │ │ │ │ ├── Archean.dbf │ │ │ │ ├── Archean.gpml │ │ │ │ ├── Archean.prj │ │ │ │ ├── Archean.shp │ │ │ │ ├── Archean.shp.gplates.xml │ │ │ │ ├── Archean.shx │ │ │ │ ├── Global_EarthByte_GPlates_PresentDay_StaticPlatePolygons_2019_v1.dbf │ │ │ │ ├── Global_EarthByte_GPlates_PresentDay_StaticPlatePolygons_2019_v1.prj │ │ │ │ ├── Global_EarthByte_GPlates_PresentDay_StaticPlatePolygons_2019_v1.shp │ │ │ │ ├── Global_EarthByte_GPlates_PresentDay_StaticPlatePolygons_2019_v1.shp.gplates.xml │ │ │ │ ├── Global_EarthByte_GPlates_PresentDay_StaticPlatePolygons_2019_v1.shp.xml │ │ │ │ ├── Global_EarthByte_GPlates_PresentDay_StaticPlatePolygons_2019_v1.shx │ │ │ │ ├── shapes_cratons_Merdith_et_al.dbf │ │ │ │ ├── shapes_cratons_Merdith_et_al.gpmlz │ │ │ │ ├── shapes_cratons_Merdith_et_al.prj │ │ │ │ ├── shapes_cratons_Merdith_et_al.shp │ │ │ │ ├── shapes_cratons_Merdith_et_al.shp.gplates.xml │ │ │ │ └── shapes_cratons_Merdith_et_al.shx │ │ │ └── tmp │ │ │ │ ├── MOR_Tethys.gpml │ │ │ │ └── MOR_Western_MesoTethys.gpml │ │ ├── West_Antarctic_Zealandia_Deforming_Mesh_2019_v2.gpml │ │ ├── West_Antarctica_Zealandia_Mesh_Topologies_2019_v2.gpml │ │ ├── Western_North_America_Deforming_Mesh_2019_v2.gpml │ │ ├── Western_Tethys_Deforming_Mesh_2019_v2.gpml │ │ ├── Western_Tethys_Tectonic_Boundary_Topologies_2019_v2.gpml │ │ └── _README.txt │ ├── Notebook9 │ │ ├── Merdith2021_400Myr_plots.png │ │ └── Merdith2021_initial_sr_conditions.png │ ├── ReadMe_Files │ │ ├── GPlately_Main_Logo_800x600.png │ │ ├── GPlately_Main_logo.png │ │ ├── GPlately_White_logo.png │ │ ├── GPlately_White_logo_800x600.png │ │ ├── etopo_reconstruction.png │ │ ├── muller19_raster_resample.png │ │ ├── muller19_seedpoints.gif │ │ ├── plot_topologies_img.png │ │ └── surface_hotspot_plumes.png │ ├── age_1000-0.cpt │ ├── continental_grid_0.nc │ ├── pdoc_Files │ │ ├── Hawaii_Emperor_motion_path.png │ │ ├── Reconstructed-Jurassic-Foraminifera-locations-min.png │ │ ├── docs_muller19_seed_points.gif │ │ ├── etopo_reconstruction.png │ │ ├── max_time_grids.png │ │ ├── new_ridge_points.png │ │ ├── plottopologies.png │ │ ├── resample.png │ │ ├── seafloorgrid.gif │ │ └── seafloorgrid_refinement.png │ ├── plate_tectonic_stats_Merdith2021-0-249Ma.csv │ ├── plate_tectonic_stats_Muller2019_0-249.csv │ ├── plate_tectonic_stats_TRUNK_0-249.csv │ ├── zircons_igneous_Wu2023.gpmlz │ ├── zircons_metamorphic_Wu2023.gpmlz │ └── zircons_sedimentary_Wu2023.gpmlz └── README.md ├── README.md ├── conda ├── conda_build_config.yaml ├── doc-env.yml └── meta.yaml ├── docker ├── Dockerfile ├── README.md ├── build-docker-image-version.txt └── env.yaml ├── gplately ├── __init__.py ├── __main__.py ├── auxiliary.py ├── commands │ ├── __init__.py │ ├── create_age_grids.py │ ├── feature_filter.py │ ├── list_models.py │ ├── readme.md │ ├── regrid.py │ └── reset_feature_type.py ├── data.py ├── decorators.py ├── download.py ├── examples ├── exceptions.py ├── geometry.py ├── gpml.py ├── grids.py ├── lib │ ├── __init__.py │ ├── icosahedron.py │ ├── polyline.py │ ├── quaternions.py │ ├── reconstruct.py │ ├── reconstruct_by_topologies.py │ └── rotation.py ├── logging_config.yaml ├── mapping │ ├── __init__.py │ ├── cartopy_plot.py │ ├── plot_engine.py │ └── pygmt_plot.py ├── notebooks ├── oceans.py ├── parallel.py ├── plot.py ├── points.py ├── ptt │ ├── __init__.py │ ├── cleanup_topologies.py │ ├── continent_contours.py │ ├── convert_xy_to_gplates.py │ ├── diagnose_rotations.py │ ├── fix_crossovers.py │ ├── gpmdb.py │ ├── remove_plate_rotations.py │ ├── resolve_topologies.py │ ├── ridge_spreading_rate.py │ ├── rotation_tools.py │ ├── separate_ridge_transform_segments.py │ ├── subduction_convergence.py │ ├── utils │ │ ├── GPMLTools.py │ │ ├── __init__.py │ │ ├── call_system_command.py │ │ ├── points_in_polygons.py │ │ ├── points_spatial_tree.py │ │ ├── proximity_query.py │ │ ├── reconstruct_by_topologies.py │ │ └── subduction_teeth.py │ └── velocity_tools.py ├── pygplates.py ├── reconstruction.py ├── spatial.py ├── tools.py └── utils │ ├── __init__.py │ ├── check_pmm.py │ ├── crustal_production.py │ ├── dev_warning.py │ ├── feature_utils.py │ ├── io_utils.py │ ├── log_utils.py │ ├── plot_utils.py │ ├── seafloor_grid_utils.py │ └── version.py ├── models.json ├── pyproject.toml ├── pytest.ini ├── release ├── release-guidelines.md └── release-notes-2.0.0.md ├── scripts ├── build-sphinx-doc.sh ├── convert-notebooks-to-html.sh ├── create-tag.py └── pypi-publish.sh ├── sphinx-doc ├── Makefile ├── make.bat ├── readme.md └── source │ ├── _static │ └── dummy.txt │ ├── api.rst │ ├── basic_usages.rst │ ├── command_line_interface.rst │ ├── conf.py │ ├── examples.rst │ ├── faq.rst │ ├── favicon.ico │ ├── functions.rst │ ├── images │ ├── Hawaii_Emperor_motion_path.png │ ├── Reconstructed-Jurassic-Foraminifera-locations-min.png │ ├── etopo_reconstruction.png │ ├── gplately-helloworld-notebook.png │ ├── gplately-helloworld.png │ ├── plottopologies.png │ └── seafloorgrid.gif │ ├── index.rst │ ├── installation.rst │ ├── plate_models.rst │ ├── primer.rst.backup │ ├── secondaries.rst │ └── use_cases.rst └── tests-dir ├── data └── test_discretize_polyline.gpmlz ├── debug_utils ├── README.md ├── create_video_to_debug_ridges_and_transforms.py ├── github-issue-287-and-289.ipynb └── github_issue_269.py ├── pytestcases ├── README.md ├── conftest.py ├── test_0_imports.py ├── test_1_reconstructions.py ├── test_2_points.py ├── test_3_plottopologies.py ├── test_4_rasters.py ├── test_5_seafloorgrid.py ├── test_6_geometry.py └── test_7_models.py ├── readme.md ├── test-env.yml └── unittest ├── README.md ├── common.py ├── create-age-grids-video ├── agegrid.cpt ├── create_age_grids_video.py └── gmt_cpt.py ├── run_all.sh ├── test_age_grid.py ├── test_anchor_plate_id.py ├── test_concurrent_download.py ├── test_continent_contouring.py ├── test_crustal_production.py ├── test_data_server.py ├── test_discretize_polyline.py ├── test_download.py ├── test_download_large_file.py ├── test_feature_filter.sh ├── test_issue_250.py ├── test_motion_path.py ├── test_plate_model.py 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