├── .gitattributes ├── .gitignore ├── .readthedocs.yaml ├── LICENSE ├── MANIFEST.in ├── README.md ├── docs ├── Makefile ├── conf.py ├── index.rst ├── make.bat ├── microberx.rst ├── modules.rst ├── rtd_requirements.txt └── tutorials │ ├── OmicsIntegrator.ipynb │ ├── PredictionMetabolites.ipynb │ ├── README.ipynb │ └── ReactionRules.ipynb ├── img ├── logo.png └── workflow.png ├── microberx ├── DataBase │ ├── Evidences.tsv.gz │ ├── MicrobesData.tsv.gz │ ├── MicrobesReactions.tsv.gz │ └── ReactionRules.tsv.gz ├── DataFiles.py ├── MetaboliteAnalyzer.py ├── MetabolitePredictor.py ├── MetaboliteVisualizer.py ├── OmicsIntegrator.py ├── RuleGenerator.py ├── __init__.py ├── _version.py └── bin │ ├── RTD.jar │ ├── RTD_LICENSE │ └── clustalw2 ├── microberx_cli.py ├── requirements.txt ├── setup.cfg ├── setup.py └── versioneer.py /.gitattributes: -------------------------------------------------------------------------------- 1 | microberx/_version.py export-subst 2 | 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