├── COVID_combat ├── COVID_combat_major.Rmd └── COVID_combat_minor.Rmd ├── Kfoury_CancerCell_2021 ├── Kfoury_CancerCell_2021.Rmd ├── Kfoury_CancerCell_2021_get_data.Rmd └── README ├── Mathys_2023 ├── Mathys_2023_Cell_Type.Rmd ├── Mathys_2023_Major_Cell_Type.Rmd ├── Mathys_2023_bulk.Rmd └── PsychAD_Mathys.Rmd ├── Nathan_NatImm_2021 ├── Nathan_NatImm_2021.Rmd ├── Nathan_NatImm_2021_get_data.R ├── README └── read.sparseMatrix.R ├── PsychAD_r0 ├── PsychAD_r0_analysis.Rmd ├── PsychAD_r0_compare.Rmd ├── README ├── additional_figs.Rmd ├── intersection_QTL.Rmd ├── subsample_cells.R └── write_pb_for_qtl.Rmd ├── README.md ├── Velmeshev_2019 ├── Velmeshev_2019.Rmd └── Velmeshev_2019_get_data.R ├── archived ├── Mathys_Nature_2019 │ ├── Mathys_Nature_2019.Rmd │ ├── Mathys_Nature_2019_crumblr.Rmd │ ├── Mathys_Nature_2019_get_data.Rmd │ └── README └── Zhou_Nat_Met_2020 │ ├── README │ ├── Zhou_Nat_Met_2020.Rmd │ └── Zhou_Nat_Met_2020_get_data.Rmd ├── delta_method ├── empirical_vif.Rmd └── 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