├── Batch_process.m ├── Functions ├── JointWMF_mex │ ├── README.txt │ ├── complete_mex │ │ ├── win32 │ │ │ ├── compileMex.m │ │ │ ├── demo_jointWMF.m │ │ │ ├── imgs │ │ │ │ └── image1.png │ │ │ ├── include │ │ │ │ └── opencv2 │ │ │ │ │ └── core │ │ │ │ │ ├── core.hpp │ │ │ │ │ ├── core_c.h │ │ │ │ │ ├── devmem2d.hpp │ │ │ │ │ ├── eigen.hpp │ │ │ │ │ ├── gpumat.hpp │ │ │ │ │ ├── internal.hpp │ │ │ │ │ ├── mat.hpp │ │ │ │ │ ├── opengl_interop.hpp │ │ │ │ │ ├── operations.hpp │ │ │ │ │ ├── types_c.h │ │ │ │ │ ├── version.hpp │ │ │ │ │ └── wimage.hpp │ │ │ ├── jointWMF.h │ │ │ ├── jointWMF.m │ │ │ ├── lib │ │ │ │ └── opencv_core242.lib │ │ │ ├── mexJointWMF.cpp │ │ │ ├── mexJointWMF.lib │ │ │ ├── opencv_core242.dll │ │ │ └── tbb.dll │ │ └── x64 │ │ │ ├── compileMex.m │ │ │ ├── demo_jointWMF.m │ │ │ ├── imgs │ │ │ └── image1.png │ │ │ ├── include │ │ │ └── opencv2 │ │ │ │ └── core │ │ │ │ ├── core.hpp │ │ │ │ ├── core_c.h │ │ │ │ ├── devmem2d.hpp │ │ │ │ ├── eigen.hpp │ │ │ │ ├── gpumat.hpp │ │ │ │ ├── internal.hpp │ │ │ │ ├── mat.hpp │ │ │ │ ├── opengl_interop.hpp │ │ │ │ ├── operations.hpp │ │ │ │ ├── types_c.h │ │ │ │ ├── version.hpp │ │ │ │ └── wimage.hpp │ │ │ ├── jointWMF.h │ │ │ ├── jointWMF.m │ │ │ ├── lib │ │ │ └── opencv_core242.lib │ │ │ ├── mexJointWMF.cpp │ │ │ ├── mexJointWMF.mexw64 │ │ │ ├── opencv_core242.dll │ │ │ └── tbb.dll │ ├── demo_jointWMF.m │ ├── dispCCed.png │ ├── im0.png │ ├── jointWMF.m │ ├── matlab_interface │ │ ├── win32 │ │ │ ├── demo_jointWMF.m │ │ │ ├── imgs │ │ │ │ └── image1.png │ │ │ ├── jointWMF.m │ │ │ ├── opencv_core242.dll │ │ │ └── tbb.dll │ │ └── x64 │ │ │ ├── demo_jointWMF.m │ │ │ ├── dispCCed.png │ │ │ ├── im0.png │ │ │ ├── imgs │ │ │ └── image1.png │ │ │ ├── jointWMF.m │ │ │ ├── mexJointWMF.mexw64 │ │ │ ├── opencv_core242.dll │ │ │ └── tbb.dll │ ├── mexJointWMF.mexw64 │ ├── opencv_core242.dll │ └── tbb.dll ├── compute_psnr.m ├── fun_3DSliceReconstruction.m ├── fun_adjustTone.m ├── fun_constructGaussianPyrmid.m ├── fun_constructPyrmid.m ├── fun_load4DLF.m ├── fun_propagateFusionMap.m ├── fun_pyramidEPIBlending.m ├── fun_reconstructPyrmid.m ├── fun_shearEvaluation.m ├── fun_shearReconstructionKernel.m ├── fun_shearedEPIRecon.m ├── fun_singleSliceReconstruction.m ├── shave.m ├── ssim_index.m └── store2hdf5.m ├── Model ├── checkpoint ├── model.ckpt.data-00000-of-00001 ├── model.ckpt.index ├── model.ckpt.meta └── model.mat ├── README.md ├── Result └── README.md ├── Scenes └── README.md ├── Training ├── GenerateTrainingData │ └── generateData.m ├── TrainDataLF │ ├── Amethyst │ │ ├── out_00_00_-399.772888_671.237122_.png │ │ ├── out_00_01_-399.887787_680.149536_.png │ │ ├── out_00_02_-399.837036_689.873413_.png │ │ ├── out_00_03_-399.877289_700.162292_.png │ │ ├── out_00_04_-399.865845_710.564392_.png │ │ ├── out_00_05_-399.795013_720.627502_.png │ │ ├── out_00_06_-399.938690_730.387207_.png │ │ ├── out_00_07_-399.927826_740.476257_.png │ │ ├── out_00_08_-399.947876_750.593994_.png │ │ ├── out_00_09_-399.877991_760.749146_.png │ │ ├── out_00_10_-399.770660_770.764648_.png │ │ ├── out_00_11_-399.785736_780.811462_.png │ │ ├── out_00_12_-399.657562_791.083313_.png │ │ ├── out_00_13_-399.732666_801.179016_.png │ │ ├── out_00_14_-399.591888_811.219299_.png │ │ ├── out_00_15_-399.417542_821.220215_.png │ │ └── out_00_16_-399.323364_831.641113_.png │ └── README.md ├── model.py ├── readH5.py ├── save_model_to_mat.py └── train_ShearedEPI.py ├── main_2x2to7x7.m └── matconvnet.zip /Batch_process.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Batch_process.m -------------------------------------------------------------------------------- /Functions/JointWMF_mex/README.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/README.txt -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/compileMex.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/compileMex.m -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/demo_jointWMF.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/demo_jointWMF.m -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/imgs/image1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/imgs/image1.png -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/core.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/core.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/core_c.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/core_c.h -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/devmem2d.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/devmem2d.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/eigen.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/eigen.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/gpumat.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/gpumat.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/internal.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/internal.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/mat.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/mat.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/opengl_interop.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/opengl_interop.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/operations.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/operations.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/types_c.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/types_c.h -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/version.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/version.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/wimage.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/include/opencv2/core/wimage.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/jointWMF.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/jointWMF.h -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/jointWMF.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/jointWMF.m -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/lib/opencv_core242.lib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/lib/opencv_core242.lib -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/mexJointWMF.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/mexJointWMF.cpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/mexJointWMF.lib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/mexJointWMF.lib -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/opencv_core242.dll: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/opencv_core242.dll -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/win32/tbb.dll: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/win32/tbb.dll -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/compileMex.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/compileMex.m -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/demo_jointWMF.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/demo_jointWMF.m -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/imgs/image1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/imgs/image1.png -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/core.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/core.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/core_c.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/core_c.h -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/devmem2d.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/devmem2d.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/eigen.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/eigen.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/gpumat.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/gpumat.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/internal.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/internal.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/mat.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/mat.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/opengl_interop.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/opengl_interop.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/operations.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/operations.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/types_c.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/types_c.h -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/version.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/version.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/wimage.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/include/opencv2/core/wimage.hpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/jointWMF.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/jointWMF.h -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/jointWMF.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/jointWMF.m -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/lib/opencv_core242.lib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/lib/opencv_core242.lib -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/mexJointWMF.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/mexJointWMF.cpp -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/mexJointWMF.mexw64: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/mexJointWMF.mexw64 -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/opencv_core242.dll: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/opencv_core242.dll -------------------------------------------------------------------------------- /Functions/JointWMF_mex/complete_mex/x64/tbb.dll: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/complete_mex/x64/tbb.dll -------------------------------------------------------------------------------- /Functions/JointWMF_mex/demo_jointWMF.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/demo_jointWMF.m -------------------------------------------------------------------------------- /Functions/JointWMF_mex/dispCCed.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/dispCCed.png -------------------------------------------------------------------------------- /Functions/JointWMF_mex/im0.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/im0.png -------------------------------------------------------------------------------- /Functions/JointWMF_mex/jointWMF.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/jointWMF.m -------------------------------------------------------------------------------- /Functions/JointWMF_mex/matlab_interface/win32/demo_jointWMF.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/matlab_interface/win32/demo_jointWMF.m -------------------------------------------------------------------------------- /Functions/JointWMF_mex/matlab_interface/win32/imgs/image1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/matlab_interface/win32/imgs/image1.png -------------------------------------------------------------------------------- /Functions/JointWMF_mex/matlab_interface/win32/jointWMF.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/matlab_interface/win32/jointWMF.m -------------------------------------------------------------------------------- /Functions/JointWMF_mex/matlab_interface/win32/opencv_core242.dll: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/matlab_interface/win32/opencv_core242.dll -------------------------------------------------------------------------------- /Functions/JointWMF_mex/matlab_interface/win32/tbb.dll: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/matlab_interface/win32/tbb.dll -------------------------------------------------------------------------------- /Functions/JointWMF_mex/matlab_interface/x64/demo_jointWMF.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/matlab_interface/x64/demo_jointWMF.m -------------------------------------------------------------------------------- /Functions/JointWMF_mex/matlab_interface/x64/dispCCed.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/matlab_interface/x64/dispCCed.png -------------------------------------------------------------------------------- /Functions/JointWMF_mex/matlab_interface/x64/im0.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/matlab_interface/x64/im0.png -------------------------------------------------------------------------------- /Functions/JointWMF_mex/matlab_interface/x64/imgs/image1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/matlab_interface/x64/imgs/image1.png -------------------------------------------------------------------------------- /Functions/JointWMF_mex/matlab_interface/x64/jointWMF.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/matlab_interface/x64/jointWMF.m -------------------------------------------------------------------------------- /Functions/JointWMF_mex/matlab_interface/x64/mexJointWMF.mexw64: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/matlab_interface/x64/mexJointWMF.mexw64 -------------------------------------------------------------------------------- /Functions/JointWMF_mex/matlab_interface/x64/opencv_core242.dll: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/matlab_interface/x64/opencv_core242.dll -------------------------------------------------------------------------------- /Functions/JointWMF_mex/matlab_interface/x64/tbb.dll: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/matlab_interface/x64/tbb.dll -------------------------------------------------------------------------------- /Functions/JointWMF_mex/mexJointWMF.mexw64: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/mexJointWMF.mexw64 -------------------------------------------------------------------------------- /Functions/JointWMF_mex/opencv_core242.dll: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/opencv_core242.dll -------------------------------------------------------------------------------- /Functions/JointWMF_mex/tbb.dll: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/JointWMF_mex/tbb.dll -------------------------------------------------------------------------------- /Functions/compute_psnr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/compute_psnr.m -------------------------------------------------------------------------------- /Functions/fun_3DSliceReconstruction.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/fun_3DSliceReconstruction.m -------------------------------------------------------------------------------- /Functions/fun_adjustTone.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/fun_adjustTone.m -------------------------------------------------------------------------------- /Functions/fun_constructGaussianPyrmid.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/fun_constructGaussianPyrmid.m -------------------------------------------------------------------------------- /Functions/fun_constructPyrmid.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/fun_constructPyrmid.m -------------------------------------------------------------------------------- /Functions/fun_load4DLF.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/fun_load4DLF.m -------------------------------------------------------------------------------- /Functions/fun_propagateFusionMap.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/fun_propagateFusionMap.m -------------------------------------------------------------------------------- /Functions/fun_pyramidEPIBlending.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/fun_pyramidEPIBlending.m -------------------------------------------------------------------------------- /Functions/fun_reconstructPyrmid.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/fun_reconstructPyrmid.m -------------------------------------------------------------------------------- /Functions/fun_shearEvaluation.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/fun_shearEvaluation.m -------------------------------------------------------------------------------- /Functions/fun_shearReconstructionKernel.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/fun_shearReconstructionKernel.m -------------------------------------------------------------------------------- /Functions/fun_shearedEPIRecon.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/fun_shearedEPIRecon.m -------------------------------------------------------------------------------- /Functions/fun_singleSliceReconstruction.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/fun_singleSliceReconstruction.m -------------------------------------------------------------------------------- /Functions/shave.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/shave.m -------------------------------------------------------------------------------- /Functions/ssim_index.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/ssim_index.m -------------------------------------------------------------------------------- /Functions/store2hdf5.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Functions/store2hdf5.m -------------------------------------------------------------------------------- /Model/checkpoint: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Model/checkpoint -------------------------------------------------------------------------------- /Model/model.ckpt.data-00000-of-00001: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Model/model.ckpt.data-00000-of-00001 -------------------------------------------------------------------------------- /Model/model.ckpt.index: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Model/model.ckpt.index -------------------------------------------------------------------------------- /Model/model.ckpt.meta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Model/model.ckpt.meta -------------------------------------------------------------------------------- /Model/model.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Model/model.mat -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/README.md -------------------------------------------------------------------------------- /Result/README.md: -------------------------------------------------------------------------------- 1 | # Result path -------------------------------------------------------------------------------- /Scenes/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Scenes/README.md -------------------------------------------------------------------------------- /Training/GenerateTrainingData/generateData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/GenerateTrainingData/generateData.m -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_00_-399.772888_671.237122_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_00_-399.772888_671.237122_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_01_-399.887787_680.149536_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_01_-399.887787_680.149536_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_02_-399.837036_689.873413_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_02_-399.837036_689.873413_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_03_-399.877289_700.162292_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_03_-399.877289_700.162292_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_04_-399.865845_710.564392_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_04_-399.865845_710.564392_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_05_-399.795013_720.627502_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_05_-399.795013_720.627502_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_06_-399.938690_730.387207_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_06_-399.938690_730.387207_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_07_-399.927826_740.476257_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_07_-399.927826_740.476257_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_08_-399.947876_750.593994_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_08_-399.947876_750.593994_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_09_-399.877991_760.749146_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_09_-399.877991_760.749146_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_10_-399.770660_770.764648_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_10_-399.770660_770.764648_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_11_-399.785736_780.811462_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_11_-399.785736_780.811462_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_12_-399.657562_791.083313_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_12_-399.657562_791.083313_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_13_-399.732666_801.179016_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_13_-399.732666_801.179016_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_14_-399.591888_811.219299_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_14_-399.591888_811.219299_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_15_-399.417542_821.220215_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_15_-399.417542_821.220215_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/Amethyst/out_00_16_-399.323364_831.641113_.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/TrainDataLF/Amethyst/out_00_16_-399.323364_831.641113_.png -------------------------------------------------------------------------------- /Training/TrainDataLF/README.md: -------------------------------------------------------------------------------- 1 | Please prepare your own data here! -------------------------------------------------------------------------------- /Training/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/model.py -------------------------------------------------------------------------------- /Training/readH5.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/readH5.py -------------------------------------------------------------------------------- /Training/save_model_to_mat.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/save_model_to_mat.py -------------------------------------------------------------------------------- /Training/train_ShearedEPI.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/Training/train_ShearedEPI.py -------------------------------------------------------------------------------- /main_2x2to7x7.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/main_2x2to7x7.m -------------------------------------------------------------------------------- /matconvnet.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GaochangWu/Sheared-EPI/HEAD/matconvnet.zip --------------------------------------------------------------------------------