├── .gitignore ├── README.md ├── baselines ├── GAT │ ├── .gitignore │ ├── LICENSE │ ├── README.md │ ├── data │ │ ├── ind.cora.allx │ │ ├── ind.cora.ally │ │ ├── ind.cora.graph │ │ ├── ind.cora.test.index │ │ ├── ind.cora.tx │ │ ├── ind.cora.ty │ │ ├── ind.cora.x │ │ └── ind.cora.y │ ├── execute_cora.py │ ├── execute_cora_sparse.py │ ├── models │ │ ├── __init__.py │ │ ├── base_gattn.py │ │ ├── gat.py │ │ ├── gat_embedding.py │ │ └── sp_gat.py │ └── utils │ │ ├── __init__.py │ │ ├── dataset.py │ │ ├── layers.py │ │ ├── process.py │ │ └── process_ppi.py ├── gcn │ ├── .gitignore │ ├── LICENCE │ ├── README.md │ ├── gcn │ │ ├── __init__.py │ │ ├── citeseerL.mat │ │ ├── cora_full_L.mat │ │ ├── data │ │ │ ├── ind.citeseer.allx │ │ │ ├── ind.citeseer.ally │ │ │ ├── ind.citeseer.graph │ │ │ ├── ind.citeseer.test.index │ │ │ ├── ind.citeseer.tx │ │ │ ├── ind.citeseer.ty │ │ │ ├── ind.citeseer.x │ │ │ ├── ind.citeseer.y │ │ │ ├── ind.cora.allx │ │ │ ├── ind.cora.ally │ │ │ ├── ind.cora.graph │ │ │ ├── ind.cora.test.index │ │ │ ├── ind.cora.tx │ │ │ ├── ind.cora.ty │ │ │ ├── ind.cora.x │ │ │ ├── ind.cora.y │ │ │ ├── ind.pubmed.allx │ │ │ ├── ind.pubmed.ally │ │ │ ├── ind.pubmed.graph │ │ │ ├── ind.pubmed.test.index │ │ │ ├── ind.pubmed.tx │ │ │ ├── ind.pubmed.ty │ │ │ ├── ind.pubmed.x │ │ │ └── ind.pubmed.y │ │ ├── dataset.py │ │ ├── inits.py │ │ ├── layers.py │ │ ├── metrics.py │ │ ├── models.py │ │ ├── train.py │ │ └── utils.py │ ├── requirements.txt │ └── setup.py ├── graphsage-simple │ ├── .gitignore │ ├── README.md │ ├── cora │ │ ├── README │ │ ├── cora.cites │ │ └── cora.content │ ├── graphsage │ │ ├── __init__.py │ │ ├── aggregators.py │ │ ├── dataset.py │ │ ├── encoders.py │ │ ├── model.py │ │ ├── model.py.bak.bak │ │ └── model_old.py │ └── pubmed-data │ │ ├── Pubmed-Diabetes.DIRECTED.cites.tab │ │ ├── Pubmed-Diabetes.GRAPH.pubmed.tab │ │ └── Pubmed-Diabetes.NODE.paper.tab └── mixhop │ ├── README.md │ ├── architectures │ └── pubmed.json │ ├── data │ └── planetoid │ │ ├── LICENSE │ │ ├── README.md │ │ ├── base_model.py │ │ ├── data │ │ ├── ind.citeseer.allx │ │ ├── ind.citeseer.ally │ │ ├── ind.citeseer.graph │ │ ├── ind.citeseer.test.index │ │ ├── ind.citeseer.tx │ │ ├── ind.citeseer.ty │ │ ├── ind.citeseer.x │ │ ├── ind.citeseer.y │ │ ├── ind.cora.allx │ │ ├── ind.cora.ally │ │ ├── ind.cora.graph │ │ ├── ind.cora.test.index │ │ ├── ind.cora.tx │ │ ├── ind.cora.ty │ │ ├── ind.cora.x │ │ ├── ind.cora.y │ │ ├── ind.pubmed.allx │ │ ├── ind.pubmed.ally │ │ ├── ind.pubmed.graph │ │ ├── ind.pubmed.test.index │ │ ├── ind.pubmed.tx │ │ ├── ind.pubmed.ty │ │ ├── ind.pubmed.x │ │ ├── ind.pubmed.y │ │ ├── planetoid_data.ipynb │ │ ├── trans.citeseer.graph │ │ ├── trans.citeseer.tx │ │ ├── trans.citeseer.ty │ │ ├── trans.citeseer.x │ │ ├── trans.citeseer.y │ │ ├── trans.cora.graph │ │ ├── trans.cora.tx │ │ ├── trans.cora.ty │ │ ├── trans.cora.x │ │ ├── trans.cora.y │ │ ├── trans.pubmed.graph │ │ ├── trans.pubmed.tx │ │ ├── trans.pubmed.ty │ │ ├── trans.pubmed.x │ │ └── trans.pubmed.y │ │ ├── ind_model.py │ │ ├── layers.py │ │ ├── test_ind.py │ │ ├── test_trans.py │ │ └── trans_model.py │ ├── mixhop_dataset.py │ ├── mixhop_dataset.py.bak │ ├── mixhop_model.py │ ├── mixhop_model.py.bak │ ├── mixhop_trainer.py │ ├── mixhop_trainer.py.bak │ ├── synthetic_experiments.py │ ├── train_citeseer.sh │ ├── train_cora.sh │ ├── train_pubmed_2layer_psum.sh │ ├── train_pubmed_3layer_fc.sh │ └── train_synthetic.sh ├── cpgnn ├── datasets │ ├── __init__.py │ ├── _dataset.py │ └── planetoid.py ├── models │ ├── CPGNN.py │ ├── H2GCN.py │ ├── __init__.py │ ├── _layers.py │ └── _metrics.py ├── modules │ ├── __init__.py │ ├── arguments.py │ ├── controller.py │ ├── logger.py │ └── monitor.py └── run_experiments.py └── experiments └── cpgnn ├── .gitignore ├── clean_workspace.sh ├── clear_workspace.sh ├── configs ├── real-with-features │ ├── cpgnn-cheby.json │ ├── cpgnn-mlp.json │ ├── gat.json │ ├── gcn-cheby.json │ ├── gcn.json │ ├── graphsage.json │ ├── h2gcn.json │ ├── mixhop.json │ └── mlp.json ├── real-without-features │ ├── cpgnn-cheby.json │ ├── cpgnn-mlp.json │ ├── gat.json │ ├── gcn-cheby.json │ ├── gcn.json │ ├── graphsage.json │ ├── h2gcn.json │ ├── mixhop.json │ └── mlp.json └── syn-products │ ├── cpgnn-cheby.json │ ├── cpgnn-mlp.json │ ├── gat.json │ ├── gcn-cheby.json │ ├── gcn.json │ ├── graphsage.json │ ├── mixhop.json │ └── mlp.json ├── experiments_workflow.py ├── graph_statistics_summarization.py ├── modules ├── feature_generation.py ├── graph_stats.py └── graphgen.py ├── run_experiments_summarization.py ├── run_gat_experiments.py ├── run_gcn_experiments.py ├── run_graph_generation.py ├── run_graphsage_experiments.py ├── run_hgcn_experiments.py ├── run_mixhop_experiments.py ├── scripts ├── get-real-benchmarks.sh └── get-syn-products.sh ├── signac.rc └── utils ├── __init__.py ├── dataset.py ├── signac_tools.py └── sparsegraph ├── __init__.py ├── io.py └── preprocess.py /.gitignore: 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