├── .absolverc ├── AUTHORS ├── CMakeLists.txt ├── COPYING ├── README.md ├── SETUP.bash ├── absolve.bash ├── dbs └── human │ ├── CH.fa │ ├── CH.fa.amb │ ├── CH.fa.ann │ ├── CH.fa.bwt │ ├── CH.fa.pac │ ├── CH.fa.sa │ ├── CL.fa │ ├── CL.fa.amb │ ├── CL.fa.ann │ ├── CL.fa.bwt │ ├── CL.fa.pac │ ├── CL.fa.sa │ ├── VHj.aa.fa │ ├── VHj.fa │ ├── VHj.fa.amb │ ├── VHj.fa.ann │ ├── VHj.fa.bwt │ ├── VHj.fa.pac │ ├── VHj.fa.sa │ ├── VHv.aa.fa │ ├── VHv.fa │ ├── VHv.fa.amb │ ├── VHv.fa.ann │ ├── VHv.fa.bwt │ ├── VHv.fa.pac │ ├── VHv.fa.sa │ ├── VLj.aa.fa │ ├── VLj.fa │ ├── VLj.fa.amb │ ├── VLj.fa.ann │ ├── VLj.fa.bwt │ ├── VLj.fa.pac │ ├── VLj.fa.sa │ ├── VLv.aa.fa │ ├── VLv.fa │ ├── VLv.fa.amb │ ├── VLv.fa.ann │ ├── VLv.fa.bwt │ ├── VLv.fa.pac │ └── VLv.fa.sa ├── dep ├── bwa-0.7.12.tar.gz └── hmmer-3.1b2.tar.gz ├── docs └── manual │ └── Absolve.html ├── hmm ├── absolveSCFV.hmm ├── absolveVH.hmm └── absolveVL.hmm ├── src ├── aligner.cpp ├── aligner.h ├── bwaaligner.cpp ├── bwaaligner.h ├── bwamem_wrapper.c ├── bwareader.cpp ├── bwareader.h ├── delimfile.cpp ├── delimfile.h ├── fasta.cpp ├── fasta.h ├── ighmm.cpp ├── ighmm.h ├── main.cpp ├── pipeline.cpp ├── pipeline.h ├── result.cpp ├── result.h ├── runstats.cpp ├── runstats.h ├── ssw.c ├── ssw.h ├── ssw_cpp.cpp ├── ssw_cpp.h ├── sswaligner.cpp ├── sswaligner.h ├── translate.cpp ├── translate.h ├── util.cpp └── util.h └── test ├── RunTest.bash ├── simulatedseqs.csv ├── simulatedseqs.fa └── testrun.ref.template ├── absolve.tsv └── statRunStats.tsv /.absolverc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Genentech/Absolve/HEAD/.absolverc -------------------------------------------------------------------------------- /AUTHORS: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Genentech/Absolve/HEAD/AUTHORS -------------------------------------------------------------------------------- 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