├── LICENSE ├── Makefile ├── README.md ├── data ├── figures ├── models ├── notebooks ├── discrete_diffusion_graph.ipynb ├── discrete_diffusion_graph_controlled_cliques.ipynb ├── discrete_diffusion_graph_controlled_community.ipynb ├── discrete_diffusion_graph_controlled_molecule_like.ipynb ├── discrete_diffusion_graph_controlled_zinc.ipynb ├── discrete_diffusion_graph_degree.ipynb ├── discrete_diffusion_graph_sanity_checks.ipynb ├── discrete_diffusion_mnist.ipynb ├── figures │ ├── controlled_cliques.ipynb │ ├── controlled_community.ipynb │ ├── controlled_molecule_like.ipynb │ ├── discrete_diffusion_summary.ipynb │ ├── mmd_performance.ipynb │ └── mmd_performance_nocache.ipynb ├── generative_performance_controlled_cliques.ipynb ├── generative_performance_controlled_community.ipynb ├── generative_performance_controlled_molecule_like.ipynb ├── generative_performance_kernel_comparison_controlled_cliques.ipynb ├── generative_performance_kernel_comparison_controlled_community.ipynb └── zinc_sandbox.ipynb ├── references ├── bibtex.bib └── thumbnail.png ├── results └── src ├── analysis ├── graph_metrics.py ├── mmd.py └── orca.cpp ├── feature ├── __init__.py ├── graph_conversions.py ├── molecule_dataset.py └── random_graph_dataset.py ├── model ├── __init__.py ├── digress_gnn.py ├── discrete_diffusers.py ├── generate.py ├── gnn.py ├── image_unet.py ├── train_model.py └── util.py └── plot ├── __init__.py └── plot.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Genentech/GraphGUIDE/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Genentech/GraphGUIDE/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: 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