├── .bowerrc ├── .editorconfig ├── .gitignore ├── .idea ├── compiler.xml └── copyright │ └── profiles_settings.xml ├── .jshintrc ├── Gruntfile.js ├── LICENSE.txt ├── README-genentech.md ├── README.md ├── bower.json ├── dist ├── pviz-amd.js ├── pviz-amd.min.js ├── pviz-bundle.js ├── pviz-bundle.min.js └── pviz-core.css ├── examples ├── deps │ ├── bootstrap-theme.min.css │ ├── bootstrap.min.css │ ├── pviz-bundle.min.js │ └── pviz-core.css ├── doc │ ├── DASReader.js.html │ ├── DetailsPane.js.html │ ├── FastaReader.js.html │ ├── FeatureDisplayer.js.html │ ├── FeatureLayer.js.html │ ├── FeatureLayerCollection.js.html │ ├── FeatureLayerView.js.html │ ├── FeatureManager.js.html │ ├── GGplot2Adapter.js.html │ ├── HiddenLayersView.js.html │ ├── OneLiner.js.html │ ├── PositionedFeature.js.html │ ├── SeqEntry.js.html │ ├── SeqEntryAnnotInteractiveView.js.html │ ├── SeqEntryFastaView.js.html │ ├── SeqEntryTableView.js.html │ ├── SeqEntryViewport.js.html │ ├── TypedDisplayer.js.html │ ├── global.html │ ├── index.html │ ├── module-DASReader-DASReader.html │ ├── module-DASReader.html │ ├── module-DetailsPane-DetailsPane.html │ ├── module-DetailsPane.html │ ├── module-FastaReader-FastaReader.html │ ├── module-FastaReader.html │ ├── module-FeatureDisplayer-FeatureDisplayer.html │ ├── module-FeatureDisplayer.html │ ├── module-FeatureLayer-FeatureLayer.html │ ├── module-FeatureLayer.html │ ├── module-FeatureLayerCollection-FeatureLayerCollection.html │ ├── module-FeatureLayerCollection.html │ ├── module-FeatureLayerView-FeatureLayerView.html │ ├── module-FeatureLayerView.html │ ├── module-FeatureManager-FeatureManager.html │ ├── module-FeatureManager.html │ ├── module-GGPLot2Adapter.html │ ├── module-HiddenLayersView-HiddenLayersView.html │ ├── module-HiddenLayersView.html │ ├── module-OneLiner-OneLiner.html │ ├── module-OneLiner.html │ ├── module-PositionedFeature-PositionedFeature.html │ ├── module-PositionedFeature.html │ ├── module-SeqEntry-SeqEntry.html │ ├── module-SeqEntry.html │ ├── module-SeqEntryAnnotInteractiveView-SeqEntryAnnotInteractiveView.html │ ├── module-SeqEntryAnnotInteractiveView.html │ ├── module-SeqEntryFastaView-SeqEntryFastaView.html │ ├── module-SeqEntryFastaView.html │ ├── module-SeqEntryTableView-SeqEntryTableView.html │ ├── module-SeqEntryTableView.html │ ├── module-SeqEntryViewport-SeqEntryViewport.html │ ├── module-SeqEntryViewport.html │ ├── module-TypeDisplayer-TypeDisplayer.html │ ├── module-TypeDisplayer.html │ ├── scripts │ │ ├── linenumber.js │ │ └── prettify │ │ │ ├── Apache-License-2.0.txt │ │ │ ├── lang-css.js │ │ │ └── prettify.js │ └── styles │ │ ├── jsdoc-default.css │ │ ├── prettify-jsdoc.css │ │ └── prettify-tomorrow.css ├── example-0.html ├── example-collapse.html ├── example-custom-display-css.html ├── example-custom-display.html ├── example-das-reader.html ├── example-different-track-heights.html ├── example-features.tsv ├── example-interaction.html ├── example-one-liner-multiple-categories.html ├── example-one-liner.html ├── example-peff-reader.html ├── example-select.html ├── example-two-das-reader.html ├── examples-utils.js ├── favicon.ico ├── hello-world.html ├── images │ ├── app-proteomics-3d.jpg │ ├── app-vep.jpg │ ├── example-0.jpg │ ├── example-collapse.jpg │ ├── example-custom-display-css.jpg │ ├── example-custom-display.jpg │ ├── example-das-reader.jpg │ ├── example-different-track-heights.jpg │ ├── example-interaction.jpg │ ├── example-one-liner-multiple-categories.jpg │ ├── example-one-liner.jpg │ ├── example-peff-reader.jpg │ ├── example-select.jpg │ └── example-two-das-reader.jpg └── index.html ├── images ├── example-0.jpg ├── example-custom-display-css.jpg ├── example-custom-display.jpg ├── example-das-reader.jpg ├── example-different-track-heights.jpg ├── example-interaction.jpg ├── example-one-liner-multiple-categories.jpg ├── example-one-liner.jpg ├── example-peff-reader.jpg ├── example-two-das-reader.jpg └── hello-world.jpg ├── package.json ├── src ├── css │ └── pviz-core.css ├── img │ ├── glyphicons-halflings-white.png │ └── glyphicons-halflings.png ├── index.html ├── js │ ├── PVizExport.js │ ├── app.js │ ├── collections │ │ └── FeatureLayerCollection.js │ ├── main.js │ ├── models │ │ ├── FeatureLayer.js │ │ ├── PositionedFeature.js │ │ └── SeqEntry.js │ ├── router.js │ ├── services │ │ ├── DASReader.js │ │ ├── FastaReader.js │ │ ├── FeatureManager.js │ │ └── IconFactory.js │ ├── utils │ │ └── GGplot2Adapter.js │ └── views │ │ ├── DetailsPane.js │ │ ├── FeatureDisplayer.js │ │ ├── FeatureLayerView.js │ │ ├── HiddenLayersView.js │ │ ├── OneLiner.js │ │ ├── SeqEntryAnnotInteractiveView.js │ │ ├── SeqEntryFastaView.js │ │ ├── SeqEntryTableView.js │ │ ├── SeqEntryViewport.js │ │ └── TypedDisplayer.js └── templates │ ├── details-pane.html │ └── seq-entry-annot-interactive.html └── test ├── envjs-test.js ├── index.html ├── lib ├── MIT.LICENSE ├── console-runner.js ├── jasmine-html.js ├── jasmine.css ├── jasmine.js ├── jasmine.junit_reporter.js └── sinon-1.7.3.js ├── phantom-index.html ├── require-config.js ├── resources ├── Q01279-features.das.xml └── Q01279-sequence.das.xml ├── scripts └── phantomjs-testrunner.js ├── suite-list.js ├── suites ├── ExpServer.js ├── models │ └── SeqEntry-tests.js ├── services │ ├── DASReader-tests.js │ ├── FastaReader-tests.js │ ├── FeatureManager-tests.js │ └── IconFactory-tests.js └── views │ ├── DetailsPane-tests.js │ ├── OneLiner-tests.js │ └── SeqEntryAnnotInteractiveView-tests.js └── test-commons.js /.bowerrc: -------------------------------------------------------------------------------- 1 | { 2 | "directory" : "bower_components" 3 | } 4 | -------------------------------------------------------------------------------- /.editorconfig: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Genentech/pviz/HEAD/.editorconfig -------------------------------------------------------------------------------- /.gitignore: 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