├── .gitignore ├── LICENSE ├── R ├── README.md ├── examples │ ├── README.md │ ├── austptha_template │ │ ├── DATA │ │ │ ├── BIRD_PLATE_BOUNDARIES │ │ │ │ ├── PB2002_steps.dat.txt.zip │ │ │ │ ├── README.txt │ │ │ │ ├── combine_traces.R │ │ │ │ ├── fix_outer_rise_rates.R │ │ │ │ ├── reformat_edited_Bird_convergence.R │ │ │ │ └── sourcezone_traces_table_merged.csv.zip │ │ │ ├── ELEV │ │ │ │ ├── GA250_1m │ │ │ │ │ ├── README.md │ │ │ │ │ └── downsample_ga250.sh │ │ │ │ ├── GEBCO_2014_1m │ │ │ │ │ ├── README.md │ │ │ │ │ └── shift_and_downsample_gebco.sh │ │ │ │ ├── README.md │ │ │ │ └── merged_dem │ │ │ │ │ ├── README.md │ │ │ │ │ ├── make_merged_dem.sh │ │ │ │ │ ├── make_wet_or_dry_dem.R │ │ │ │ │ ├── patch_dem.R │ │ │ │ │ └── patch_polygon │ │ │ │ │ ├── patch_polygon.dbf │ │ │ │ │ ├── patch_polygon.prj │ │ │ │ │ ├── patch_polygon.qpj │ │ │ │ │ ├── patch_polygon.shp │ │ │ │ │ └── patch_polygon.shx │ │ │ ├── HAZARD_POINTS │ │ │ │ ├── INPUTS │ │ │ │ │ ├── DART_LOCATIONS │ │ │ │ │ │ └── dart_metadata.csv │ │ │ │ │ ├── EXTRA_HAZ_LINES │ │ │ │ │ │ ├── EXTRA_HAZ_LINES.dbf │ │ │ │ │ │ ├── EXTRA_HAZ_LINES.prj │ │ │ │ │ │ ├── EXTRA_HAZ_LINES.qpj │ │ │ │ │ │ ├── EXTRA_HAZ_LINES.shp │ │ │ │ │ │ └── EXTRA_HAZ_LINES.shx │ │ │ │ │ ├── GRID_CLIP_LAYER │ │ │ │ │ │ ├── grid_clip_layer.dbf │ │ │ │ │ │ ├── grid_clip_layer.prj │ │ │ │ │ │ ├── grid_clip_layer.qpj │ │ │ │ │ │ ├── grid_clip_layer.shp │ │ │ │ │ │ └── grid_clip_layer.shx │ │ │ │ │ ├── HAZ_PT_REMOVAL_REGION │ │ │ │ │ │ ├── HAZ_PT_REMOVAL_REGION.dbf │ │ │ │ │ │ ├── HAZ_PT_REMOVAL_REGION.prj │ │ │ │ │ │ ├── HAZ_PT_REMOVAL_REGION.qpj │ │ │ │ │ │ ├── HAZ_PT_REMOVAL_REGION.shp │ │ │ │ │ │ └── HAZ_PT_REMOVAL_REGION.shx │ │ │ │ │ └── ISLAND_CLIP_LAYER │ │ │ │ │ │ ├── ISLAND_CLIP_LAYER.dbf │ │ │ │ │ │ ├── ISLAND_CLIP_LAYER.prj │ │ │ │ │ │ ├── ISLAND_CLIP_LAYER.qpj │ │ │ │ │ │ ├── ISLAND_CLIP_LAYER.shp │ │ │ │ │ │ └── ISLAND_CLIP_LAYER.shx │ │ │ │ ├── README.md │ │ │ │ ├── combine_hazard_points.R │ │ │ │ ├── contour_util.R │ │ │ │ ├── make_all.sh │ │ │ │ ├── make_gridded_hazard_points.R │ │ │ │ ├── make_hazard_pts.R │ │ │ │ ├── point_util.R │ │ │ │ └── reorder_mhp.R │ │ │ ├── README.md │ │ │ ├── SOURCEZONE_CONTOURS │ │ │ │ └── README.md │ │ │ ├── SOURCEZONE_DOWNDIP_LINES │ │ │ │ └── README.md │ │ │ ├── SOURCEZONE_PARAMETERS │ │ │ │ ├── README.md │ │ │ │ └── sourcezone_parameters.csv │ │ │ └── make_initial_downdip_lines.R │ │ ├── EVENT_RATES │ │ │ ├── README.md │ │ │ ├── R_modules.sh │ │ │ ├── append_variable_mu_variables_to_event_netcdf.R │ │ │ ├── back_calculate_convergence.R │ │ │ ├── check_event_netcdf_files.R │ │ │ ├── check_sourcezone_parameters.R │ │ │ ├── clean_shapefiles_for_plotting.R │ │ │ ├── compute_rates_all_sources.R │ │ │ ├── compute_station_hazard_curves.R │ │ │ ├── config.R │ │ │ ├── config_DART_test_files.R │ │ │ ├── config_peak_slip_limit_factor.R │ │ │ ├── convergence_rates_plots_comparison_methods.R │ │ │ ├── create_nc_file_peak_stage_unit_sources.R │ │ │ ├── earthquake_rate_comparisons_PAGEOPH_paper.R │ │ │ ├── earthquake_rate_comparisons_PTHA18_report.R │ │ │ ├── event_dart_coverage_vs_distance.R │ │ │ ├── event_properties_and_GOF.R │ │ │ ├── gcmt_subsetter.R │ │ │ ├── integrated_rate_given_stage.R │ │ │ ├── make_spatially_variable_source_zone_convergence_rates.R │ │ │ ├── parse_earthquake_data_in_source_zones.R │ │ │ ├── plot_hazard_curves.R │ │ │ ├── plot_hazard_curves_utilities.R │ │ │ ├── plot_peak_stage_1m_slip.R │ │ │ ├── quick_station_plots_all_sites.R │ │ │ ├── quick_station_stage_exceedance_rates.R │ │ │ ├── revised_ari500_station_hazard_curves_extract.R │ │ │ ├── revised_clean_shapefiles_for_plotting.R │ │ │ ├── revised_integrated_rate_given_stage.R │ │ │ ├── revised_quick_station_plots_all_sites.R │ │ │ ├── revised_quick_station_stage_exceedance_rates.R │ │ │ ├── revised_station_hazard_curves.R │ │ │ ├── revised_station_hazard_curves_FINAL.R │ │ │ ├── revised_station_hazard_curves_FINAL_MERGE.R │ │ │ ├── revised_station_hazard_curves_MAKE_NETCDF.R │ │ │ ├── revised_station_hazard_curves_PREPROCESSING.R │ │ │ ├── revised_tsunami_stage_exceedance_rates_to_csv.R │ │ │ ├── revised_tsunami_stage_exceedance_rates_to_csv_for_digital_atlas.R │ │ │ ├── run_compute_rates_and_station_hazard_curves.PBS │ │ │ ├── run_quick_station_plots_on_subset_of_sites.PBS │ │ │ ├── slip_simulator.R │ │ │ ├── stage_range_summary.R │ │ │ ├── submit_all_PBS_revised_station_hazard_curves_FINAL.R │ │ │ ├── tsunami_stage_exceedance_rates_to_csv.R │ │ │ ├── variable_mu_checks.R │ │ │ └── working_with_rate_curves.R │ │ ├── README.md │ │ └── SOURCE_ZONES │ │ │ ├── README.md │ │ │ ├── TEMPLATE │ │ │ ├── EQ_SOURCE │ │ │ │ ├── README.md │ │ │ │ ├── R_modules.sh │ │ │ │ ├── config.R │ │ │ │ ├── produce_unit_sources.R │ │ │ │ ├── run_produce_unit_sources.PBS │ │ │ │ └── sum_sources.R │ │ │ ├── README.md │ │ │ ├── TSUNAMI_EVENTS │ │ │ │ ├── README.md │ │ │ │ ├── R_modules.sh │ │ │ │ ├── check_dart_example.R │ │ │ │ ├── check_dart_example2.R │ │ │ │ ├── check_dart_include.R │ │ │ │ ├── check_events.R │ │ │ │ ├── compare_with_data_environment.R │ │ │ │ ├── config.R │ │ │ │ ├── mahalanobis_obs_vs_model.R │ │ │ │ ├── make_all_earthquake_events.R │ │ │ │ ├── make_all_earthquake_tsunami.R │ │ │ │ ├── merge_additional_stochastic_tsunami_into_netcdf.R │ │ │ │ ├── plots │ │ │ │ │ ├── README.md │ │ │ │ │ ├── earthquake_types_plot_example.R │ │ │ │ │ ├── event_plot.R │ │ │ │ │ ├── gauge_summary_statistics.R │ │ │ │ │ ├── test_spec_lomb.R │ │ │ │ │ └── time_domain_hybrid_norm.R │ │ │ │ ├── run_make_all_tsunami_events.PBS │ │ │ │ ├── run_merge_additional_stochastic_tsunami_into_netcdf.PBS │ │ │ │ ├── run_unfinished_stochastic_earthquake_tsunami.R │ │ │ │ └── sum_tsunami_unit_sources.R │ │ │ └── TSUNAMI_UNIT_SOURCE │ │ │ │ ├── README.md │ │ │ │ ├── R_modules.sh │ │ │ │ ├── check_logfile.R │ │ │ │ ├── check_runs_complete.R │ │ │ │ ├── config.R │ │ │ │ ├── create_files_for_all_simulations.R │ │ │ │ ├── permute_netcdf_tide_gauge_dim.R │ │ │ │ ├── run_16.sh │ │ │ │ ├── run_permute_netcdf_tide_gauge_dim.PBS │ │ │ │ └── template │ │ │ │ ├── README.txt │ │ │ │ ├── model_namelist.in │ │ │ │ └── swals_modules_nci.sh │ │ │ ├── check_files.R │ │ │ ├── checkruns.R │ │ │ ├── compute_initial_condition_potential_energy.R │ │ │ ├── dart_check_codes │ │ │ ├── README.md │ │ │ ├── check_dart_kermadectonga2.R │ │ │ ├── check_dart_kurilsjapan.R │ │ │ ├── check_dart_newhebrides2.R │ │ │ ├── check_dart_outerrise_kermadectonga.R │ │ │ ├── check_dart_puysegur2.R │ │ │ ├── check_dart_solomon2.R │ │ │ ├── check_dart_southamerica.R │ │ │ ├── check_dart_sunda2.R │ │ │ └── dart_process │ │ │ │ ├── README.md │ │ │ │ ├── extract_tsunami_from_dart.R │ │ │ │ ├── read_dart_files.R │ │ │ │ ├── read_dart_metadata.R │ │ │ │ └── scrape_dart.R │ │ │ ├── fix_rake_in_normal_fault_source_files.R │ │ │ ├── make_reduced_tsunami_max_stage_nc_files.R │ │ │ ├── move_nc_files_and_replace_with_symbolic_links.R │ │ │ └── run_16.sh │ ├── combine_tsunami_sources │ │ ├── README.md │ │ └── combine_tsunami_sources.R │ ├── contours_from_source_traces │ │ ├── README.md │ │ ├── collate_source_traces.R │ │ ├── run_convert_traces_to_contours.R │ │ ├── tanimbar │ │ │ ├── tanimbar.dbf │ │ │ ├── tanimbar.prj │ │ │ ├── tanimbar.shp │ │ │ └── tanimbar.shx │ │ ├── timor │ │ │ ├── timor.dbf │ │ │ ├── timor.prj │ │ │ ├── timor.qpj │ │ │ ├── timor.shp │ │ │ └── timor.shx │ │ └── tolo_thrust │ │ │ ├── tolo_thrust.dbf │ │ │ ├── tolo_thrust.prj │ │ │ ├── tolo_thrust.qpj │ │ │ ├── tolo_thrust.shp │ │ │ └── tolo_thrust.shx │ ├── dem_blending_2_rasters │ │ ├── README.md │ │ └── dem_blending_2_rasters.R │ ├── effect_of_low_dip_near_trench │ │ ├── README.md │ │ ├── effect_low_dip.R │ │ └── varying_topography.R │ ├── event_rates │ │ ├── README.md │ │ └── single_source_rate_computation.R │ ├── make_hazard_points │ │ ├── README.md │ │ ├── contour_util.R │ │ ├── country_area_check.R │ │ ├── make_hazard_pts.R │ │ ├── point_util.R │ │ └── recentre_haz.sh │ ├── okada_displacements_ptha18_scenarios │ │ ├── README.md │ │ ├── config.R │ │ ├── get_displacements_for_events.R │ │ ├── make_notes.R │ │ ├── notes.Rmd │ │ ├── notes.md │ │ └── produce_okada3d_unit_sources.R │ ├── rgeos_alternatives │ │ ├── README.md │ │ ├── alternatives_rgeos.R │ │ ├── hjort │ │ │ ├── hjort.dbf │ │ │ ├── hjort.prj │ │ │ ├── hjort.shp │ │ │ └── hjort.shx │ │ └── test.R │ └── source_contours_2_unit_sources │ │ ├── CONTOURS │ │ ├── alaska.dbf │ │ ├── alaska.prj │ │ ├── alaska.shp │ │ └── alaska.shx │ │ ├── DOWNDIP_LINES │ │ ├── alaska_downdip.dbf │ │ ├── alaska_downdip.prj │ │ ├── alaska_downdip.shp │ │ └── alaska_downdip.shx │ │ ├── README.md │ │ ├── ThreeD_plot.png │ │ ├── figure │ │ ├── unnamed-chunk-2-1.png │ │ ├── unnamed-chunk-3-1.png │ │ ├── unnamed-chunk-5-1.png │ │ └── unnamed-chunk-6-1.png │ │ ├── make_initial_downdip_lines.R │ │ ├── make_tutorial.R │ │ ├── produce_unit_sources.R │ │ ├── tutorial.Rmd │ │ └── tutorial.md ├── install │ ├── NCI_gadi_R361 │ │ ├── README.md │ │ └── R_361_NCI_modules.sh │ ├── NCI_with_R351 │ │ ├── README.md │ │ ├── R_modules.sh │ │ └── package_installs.R │ └── NCI_with_R_330 │ │ ├── .R │ │ └── Makeconf │ │ ├── README.md │ │ ├── R_modules.sh │ │ └── package_installs.R └── rptha │ ├── DESCRIPTION │ ├── LICENSE │ ├── NAMESPACE │ ├── R │ ├── alternatives_rgeos.R │ ├── axpy_local.R │ ├── contour_interpolator.R │ ├── downdip_3d_lines_on_source.R │ ├── gauge_statistics.R │ ├── geometric_util.R │ ├── gutenberg_richter_densities.R │ ├── kajiura_convolution.R │ ├── kajiura_filter.R │ ├── make_stage_vs_rate_curve_fast.R │ ├── okada_tsunami.R │ ├── override_antipodal_geosphere.R │ ├── parent_script_name.R │ ├── plot_extras.R │ ├── potential_energy.R │ ├── read_mux.R │ ├── read_write_OGR.R │ ├── rupture_events.R │ ├── rupture_probabilities.R │ ├── rupture_scaling.R │ ├── sffm_fit_simulate_earthquake.R │ ├── taperedGR_moment_release.R │ ├── tsunami_arrival_time_fast.R │ ├── tsunami_sources.R │ ├── unit_sources.R │ ├── unstructured_interpolation.R │ ├── wave_dispersion_relation.R │ └── write_table_to_ncdf4.R │ ├── build_and_check_package.R │ ├── build_package.R │ ├── inst │ └── extdata │ │ ├── Ho_Chile1960_initial_displacement_NA_on_land.tif │ │ ├── puysegur.dbf │ │ ├── puysegur.prj │ │ ├── puysegur.shp │ │ ├── puysegur.shx │ │ ├── puysegur_downdip.dbf │ │ ├── puysegur_downdip.prj │ │ ├── puysegur_downdip.shp │ │ └── puysegur_downdip.shx │ ├── man │ ├── BilekLay99_magnitude_depth_duration.Rd │ ├── M0_2_Mw.Rd │ ├── Mw_2_rupture_size.Rd │ ├── Mw_2_rupture_size_inverse.Rd │ ├── Mw_exceedance_rate_characteristic_gutenberg_richter.Rd │ ├── Mw_exceedance_rate_truncated_gutenberg_richter.Rd │ ├── add_log_axis_ticks.Rd │ ├── adjust_longitude_by_360_deg.Rd │ ├── airy_period.Rd │ ├── airy_wavelength.Rd │ ├── angle_within_dtheta_of_target.Rd │ ├── approxSpatialLines.Rd │ ├── axpy_local.Rd │ ├── bisection.Rd │ ├── cartesian2d_to_spherical_coordinates.Rd │ ├── compute_grid_point_areas_in_polygon.Rd │ ├── compute_moment_fraction_from_events_greater_or_equal_than_mwmin.Rd │ ├── compute_slip_density_parameters.Rd │ ├── convert_Mw_vs_exceedance_rates_2_stage_vs_exceedance_rates.Rd │ ├── create_downdip_lines_on_source_contours.Rd │ ├── create_downdip_lines_on_source_contours_improved.Rd │ ├── dGR.Rd │ ├── discretized_source_approximate_summary_statistics.Rd │ ├── discretized_source_from_source_contours.Rd │ ├── discretized_source_summary_statistics.Rd │ ├── distance_down_depth.Rd │ ├── downdip_lines_to_SpatialLinesDataFrame.Rd │ ├── dtruncGR.Rd │ ├── edge_source_interpolator.Rd │ ├── exceedance_rate_given_maxima_and_arrival_time.Rd │ ├── exceedance_rate_of_observed.Rd │ ├── find_unit_source_index_containing_point.Rd │ ├── fit_truncGR_multiple_catalogues.Rd │ ├── gArea.Rd │ ├── gBuffer.Rd │ ├── gCentroid.Rd │ ├── gContains.Rd │ ├── gCovers.Rd │ ├── gDistance.Rd │ ├── gIntersection.Rd │ ├── gIntersects.Rd │ ├── gUnaryUnion.Rd │ ├── gUnion.Rd │ ├── gauge_energy_banding.Rd │ ├── gauge_range_filtered.Rd │ ├── gauge_statistics_simple.Rd │ ├── gauge_zero_crossing_period.Rd │ ├── get_all_earthquake_events.Rd │ ├── get_all_earthquake_events_of_magnitude_Mw.Rd │ ├── get_depth_dip_at_unit_source_interior_points.Rd │ ├── get_discretized_source_outline.Rd │ ├── get_event_probabilities_conditional_on_Mw.Rd │ ├── get_event_slip_weighted_centroid.Rd │ ├── get_random_seed.Rd │ ├── get_shallow_unit_source_top_edge_strikes.Rd │ ├── get_unit_source_from_discretized_source.Rd │ ├── get_unit_source_indices_in_event.Rd │ ├── interpolate_3D_path.Rd │ ├── interpolate_gc_path.Rd │ ├── interpolation_discontinuous.Rd │ ├── intersect_surface_path_with_depth_contours.Rd │ ├── kajiura_convolution.Rd │ ├── kajiura_filter.Rd │ ├── kajiura_g.Rd │ ├── kajiura_g_empirical.Rd │ ├── kajiura_smooth_raster.Rd │ ├── lonlat2utm.Rd │ ├── lonlat2xyz.Rd │ ├── lonlat_in_poly.Rd │ ├── lonlat_nearest_neighbours.Rd │ ├── make_conditional_ecdf.Rd │ ├── make_contour_interpolator.Rd │ ├── make_edge_approxfun.Rd │ ├── make_line_interpolation_fun.Rd │ ├── make_source_contours_interpolation_function_list.Rd │ ├── make_tsunami_unit_source.Rd │ ├── mean_angle.Rd │ ├── mid_line_with_cutpoints_from_downdip_sldf_and_source_contours.Rd │ ├── nearest_neighbour_interpolation.Rd │ ├── okada_tsunami.Rd │ ├── orthogonal_near_trench.Rd │ ├── pGR.Rd │ ├── parent_script_name.Rd │ ├── plot3d_unit_source_interior_points_cartesian.Rd │ ├── plot_all_tsunami_unit_sources.Rd │ ├── plot_earthquake_event_properties.Rd │ ├── plot_unit_source_interior_points_cartesian.Rd │ ├── ptruncGR.Rd │ ├── qGR.Rd │ ├── qtruncGR.Rd │ ├── rGR.Rd │ ├── rate_of_earthquakes_greater_than_Mw_function.Rd │ ├── readOGR.Rd │ ├── read_mux2_data.Rd │ ├── read_mux2_data_alternative.Rd │ ├── read_table_from_netcdf.Rd │ ├── rectangle_on_grid.Rd │ ├── rotate_cartesian2d.Rd │ ├── rtruncGR.Rd │ ├── sea_surface_available_potential_energy.Rd │ ├── sffm_events_to_table.Rd │ ├── sffm_fit_parameters.Rd │ ├── sffm_get_default_model_parameters.Rd │ ├── sffm_get_numerical_wavenumbers.Rd │ ├── sffm_make_events_on_discretized_source.Rd │ ├── sffm_make_random_lwkc_function.Rd │ ├── sffm_recentre_slip.Rd │ ├── sffm_simulate.Rd │ ├── sffm_slip_goodness_of_fit.Rd │ ├── shear_modulus_depth.Rd │ ├── slip_from_Mw.Rd │ ├── slip_from_Mw_area_mu.Rd │ ├── spherical_to_cartesian2d_coordinates.Rd │ ├── straight_line_distance.Rd │ ├── taperedGR_Mc_from_moment_release_rate.Rd │ ├── taperedGR_exceedance_rate.Rd │ ├── taperedGR_exceedance_rate_derivative.Rd │ ├── taperedGR_moment_release_rate.Rd │ ├── triangular_interpolation.Rd │ ├── tsunami_maxima_and_arrival_time.Rd │ ├── tsunami_unit_source_2_raster.Rd │ ├── unit_source_cartesian_to_okada_tsunami_source.Rd │ ├── unit_source_grid_to_SpatialPolygonsDataFrame.Rd │ ├── unit_source_interior_points_cartesian.Rd │ ├── weighted_percentile.Rd │ ├── writeOGR.Rd │ └── write_table_to_netcdf.Rd │ ├── src │ ├── DC3D.f │ ├── Makevars │ ├── axpy_c.c │ ├── gauge_statistics.f90 │ ├── gauge_statistics_c.c │ ├── kajiura.f90 │ ├── kajiura_c.c │ ├── make_stage_vs_rate_curve_site.f90 │ ├── make_stage_vs_rate_curve_site_c.c │ ├── okada_tsunami_c.c │ ├── okada_tsunami_fortran.f │ ├── tsunami_arrival_time.f90 │ └── tsunami_arrival_time_c.c │ └── tests │ ├── testthat.R │ └── testthat │ ├── test_GR.R │ ├── test_adjust_longitude_by_360_deg.R │ ├── test_discrete_source_summary_statistics.R │ ├── test_distance_down_depth.R │ ├── test_interpolate_gc_path.R │ ├── test_interpolation.R │ ├── test_intersect_surface_path_with_depth_contours.R │ ├── test_kajiura_filter.R │ ├── test_mean_angle.R │ ├── test_okada_tsunami.R │ ├── test_rupture_creation_and_probabilities.R │ ├── test_rupture_scaling.R │ ├── test_spherical_to_cartesian2d_and_inverse.R │ ├── test_unit_source_cartesian_to_okada_tsunami_source.R │ ├── test_unit_source_interior_points_cartesian.R │ ├── test_write_table_to_ncdf4.R │ └── testshp │ ├── alaska.dbf │ ├── alaska.prj │ ├── alaska.shp │ ├── alaska.shx │ ├── sagami.dbf │ ├── sagami.prj │ ├── sagami.shp │ └── sagami.shx ├── README.md ├── misc ├── README.md ├── SW_WA_2021_2024 │ ├── Greater_Perth │ │ ├── README.md │ │ ├── analysis │ │ │ ├── README.md │ │ │ ├── check_log_files │ │ │ │ ├── README.md │ │ │ │ └── check_log_files.R │ │ │ ├── jatwc_to_inundation │ │ │ │ ├── README.md │ │ │ │ ├── compute_max_depths_for_marine_warning_scenarios.R │ │ │ │ ├── compute_scenario_statistics_in_zone.R │ │ │ │ ├── convert_raster_zones_to_polygons_with_PTHA_limits.R │ │ │ │ ├── make_elevation_contours.R │ │ │ │ ├── make_pdf.sh │ │ │ │ ├── make_vrt.R │ │ │ │ ├── map_threat_levels_in_zone.R │ │ │ │ └── run_all_polygon_conversion.sh │ │ │ ├── max_flow_plots │ │ │ │ └── README.md │ │ │ ├── max_stage_at_a_point │ │ │ │ ├── README.md │ │ │ │ ├── check_hillarys.R │ │ │ │ ├── extract_max_stage_at_a_point.R │ │ │ │ └── plot_offshore_vs_onshore_stage.R │ │ │ └── probabilistic_inundation │ │ │ │ ├── README.md │ │ │ │ ├── compute_exceedance_rates_at_epistemic_uncertainty_percentile.R │ │ │ │ ├── compute_exceedance_rates_for_multiple_threshold_depths_logic_tree_mean_newParallelPartition.R │ │ │ │ ├── compute_exceedance_rates_for_threshold_depth_logic_tree_mean.R │ │ │ │ ├── compute_exceedance_rates_for_threshold_depth_logic_tree_mean_newParallelPartition.R │ │ │ │ ├── compute_exceedance_rates_for_threshold_stage_logic_tree_mean_newParallelPartition.R │ │ │ │ ├── compute_mean_exrate_upper_CI.R │ │ │ │ ├── compute_sum_of_percentiles.R │ │ │ │ ├── exceedance_rate_raster_calculations.R │ │ │ │ ├── make_exceedance_rate_jobs.R │ │ │ │ ├── make_vrt_mean_variance_CI_summed_sources.sh │ │ │ │ ├── reviseddomains_080422 │ │ │ │ ├── exrates_for_multiple_depths │ │ │ │ │ ├── README.md │ │ │ │ │ ├── compute_banded_depths.R │ │ │ │ │ ├── compute_exrates_multiple_depths.R │ │ │ │ │ └── make_vrt.sh │ │ │ │ └── exrates_for_multiple_stages │ │ │ │ │ ├── README.md │ │ │ │ │ ├── compute_banded_stages.R │ │ │ │ │ ├── compute_exrates_multiple_stages.R │ │ │ │ │ └── make_vrt.sh │ │ │ │ ├── run_compute_exceedance_rates_at_epistemic_uncertainty_RUNDIR_PERCENTILE_LOWER_UPPER.sh │ │ │ │ ├── run_compute_exceedance_rates_for_multiple_threshold_depths_logic_tree_mean_newParallelPartition.sh │ │ │ │ ├── run_compute_exceedance_rates_for_threshold_depth_logic_tree_mean_newParallelPartition.sh │ │ │ │ └── run_compute_exceedance_rates_for_threshold_stage_logic_tree_mean_newParallelPartition.sh │ │ ├── breakwalls │ │ │ ├── README.md │ │ │ ├── convert_lines_to_lon_lat_maxelev.R │ │ │ ├── make_breakwalls.R │ │ │ ├── make_breakwalls_list.R │ │ │ ├── perth.zip │ │ │ └── swals_breakwall_files.txt │ │ ├── elevation │ │ │ ├── make_swals_elevation_files_preference_list.R │ │ │ └── swals_elevation_files_in_preference_order.txt │ │ ├── gauges │ │ │ ├── gauges_extra │ │ │ │ ├── TideGauges_Lotiro2010.csv │ │ │ │ ├── gauges_extra.dbf │ │ │ │ ├── gauges_extra.prj │ │ │ │ ├── gauges_extra.qpj │ │ │ │ ├── gauges_extra.shp │ │ │ │ └── gauges_extra.shx │ │ │ └── make_gauges.R │ │ ├── multidomain_design │ │ │ ├── README.md │ │ │ ├── aggregate_boxes.R │ │ │ ├── create_boxes.R │ │ │ └── edit_boxes.R │ │ ├── sources │ │ │ ├── hazard │ │ │ │ ├── random_outerrisesunda │ │ │ │ │ ├── Non_uniform_sampling_effort_compromise_stratifiedImportance.csv │ │ │ │ │ ├── README.md │ │ │ │ │ ├── generate_initial_conditions.R │ │ │ │ │ ├── sample_random_scenarios_simple.R │ │ │ │ │ └── select_random_scenarios.R │ │ │ │ └── random_sunda2 │ │ │ │ │ ├── Non_uniform_sampling_effort_compromise_stratifiedImportance.csv │ │ │ │ │ ├── README.md │ │ │ │ │ ├── generate_initial_conditions.R │ │ │ │ │ ├── sample_random_scenarios_simple.R │ │ │ │ │ └── select_random_scenarios.R │ │ │ └── like_historic │ │ │ │ ├── README.md │ │ │ │ ├── apply_kajiura_to_rasters.R │ │ │ │ └── make_rasters_we_need.sh │ │ └── swals │ │ │ ├── DEBUG_run_with_old_nesting.sh │ │ │ ├── FujiSatake2007_time_varying_forcing_instantaneous.csv │ │ │ ├── FujiSatake2007_time_varying_forcing_realistic.csv │ │ │ ├── OUTPUTS │ │ │ └── README_FILE_LOCATIONS.md │ │ │ ├── README.md │ │ │ ├── R_400_NCI_modules.sh │ │ │ ├── SWALS_ifort_modules_2021.sh │ │ │ ├── SWALS_ifort_modules_2022.sh │ │ │ ├── SWALS_ifort_modules_2023.sh │ │ │ ├── bzip2_some_files.R │ │ │ ├── create_plots_from_tarred_multidomain_dirs.R │ │ │ ├── create_random_ptha_qsub_scripts_sealevel60cm.R │ │ │ ├── create_random_ptha_qsub_scripts_sealevel60cm_lowres.R │ │ │ ├── create_random_ptha_qsub_scripts_sealevel60cm_reviseddomain_highres.R │ │ │ ├── create_run_model_VAUS_Mw92_job_scripts.R │ │ │ ├── create_tarred_rasters_from_tarred_multidomains.R │ │ │ ├── load_balance_script.R │ │ │ ├── make_animation.R │ │ │ ├── make_domains_shapefile.R │ │ │ ├── make_folders_and_copy_gauges.R │ │ │ ├── make_folders_and_copy_rasters.R │ │ │ ├── make_initial_conditions_complex_historical_events.R │ │ │ ├── make_model_gfortran │ │ │ ├── make_model_ifort │ │ │ ├── make_rasters.R │ │ │ ├── model.f90 │ │ │ ├── model_local_routines.f90 │ │ │ ├── plot_gauges_perth_sumatra2004.R │ │ │ ├── plot_gauges_perth_sumatra2005.R │ │ │ ├── plots │ │ │ ├── plot_all.R │ │ │ ├── plot_gauges_generic_include.R │ │ │ ├── plot_sumatra2004.R │ │ │ └── plot_sumatra2005.R │ │ │ ├── run_Fuji_Sumatra2005_6_nodes.sh │ │ │ ├── run_HS_sunda_arc_104465.sh │ │ │ ├── run_HS_sunda_arc_107686.sh │ │ │ ├── run_VAUS_Mw92_10054_6_nodes_SCALED_BY_5.sh │ │ │ ├── run_VAUS_Mw92_10217_6_nodes_SCALED_BY_5.sh │ │ │ ├── run_VAUS_Mw92_10231_6_nodes.sh │ │ │ ├── run_VAUS_Mw92_10231_6_nodes_SCALED_BY_5.sh │ │ │ ├── run_VAUS_Mw92_10231_convergence.sh │ │ │ ├── run_VAUS_Mw92_sunda_arc_107364.sh │ │ │ ├── run_VAUS_Mw92_sunda_arc_Mw92_initial_condition_10054.sh │ │ │ ├── run_VAUS_Mw92_sunda_arc_Mw92_initial_condition_10217.sh │ │ │ ├── run_VAUS_Mw92_sunda_arc_Mw92_initial_condition_10231.sh │ │ │ ├── run_VAUS_Mw92_sunda_arc_Mw92_initial_condition_10427.sh │ │ │ ├── run_VAUS_Mw92_sunda_arc_Mw92_initial_condition_10464.sh │ │ │ ├── run_VAUS_Mw92_sunda_arc_Mw92_initial_condition_10584.sh │ │ │ ├── run_VAUS_Mw92_sunda_arc_Mw92_initial_condition_10819.sh │ │ │ ├── run_VAUS_Mw92_sunda_arc_Mw92_initial_condition_11144.sh │ │ │ ├── run_bzip2_some_files.sh │ │ │ ├── run_create_plots_from_tarred_multidomain_dirs.sh │ │ │ ├── run_create_tarred_rasters_from_tarred_multidomains.sh │ │ │ ├── run_model_Fuji2004_3nodes_lowres.sh │ │ │ ├── run_model_Fuji2004_6_nodes.sh │ │ │ ├── run_model_Fuji2004_convergence.sh │ │ │ ├── run_model_Fujii21_sumatra2004_6nodes.sh │ │ │ ├── run_raster_creator.sh │ │ │ ├── run_sunda2_109366_debug.sh │ │ │ ├── tar_and_remove_matching_dir.R │ │ │ └── zero_max_stage_where_max_flux_is_zero.R │ ├── README.md │ ├── bunbury_busselton │ │ ├── README.md │ │ ├── analysis │ │ │ ├── README.md │ │ │ ├── check_log_files │ │ │ │ ├── README.md │ │ │ │ └── check_log_files.R │ │ │ ├── jatwc_to_inundation │ │ │ │ ├── README.md │ │ │ │ ├── compute_max_depths_for_marine_warning_scenarios.R │ │ │ │ ├── compute_scenario_statistics_in_zone.R │ │ │ │ ├── convert_raster_zones_to_polygons_with_PTHA_limits.R │ │ │ │ ├── copy_elevation_rasters_locally.R │ │ │ │ ├── make_elevation_contours.R │ │ │ │ ├── make_pdf.sh │ │ │ │ ├── make_vrt.R │ │ │ │ ├── map_threat_levels_in_zone.R │ │ │ │ └── run_all.sh │ │ │ ├── max_stage_at_a_point │ │ │ │ ├── README.md │ │ │ │ ├── check_hillarys.R │ │ │ │ ├── extract_max_stage_at_a_point.R │ │ │ │ ├── plot_offshore_vs_onshore_stage.R │ │ │ │ └── run_a_few.sh │ │ │ └── probabilistic_inundation │ │ │ │ ├── README.md │ │ │ │ ├── R_421_NCI_modules.sh │ │ │ │ ├── compute_exceedance_rates_at_epistemic_uncertainty_percentile.R │ │ │ │ ├── compute_exceedance_rates_for_multiple_threshold_depths_logic_tree_mean_newParallelPartition.R │ │ │ │ ├── compute_exceedance_rates_for_threshold_depth_logic_tree_mean.R │ │ │ │ ├── compute_exceedance_rates_for_threshold_depth_logic_tree_mean_newParallelPartition.R │ │ │ │ ├── compute_exceedance_rates_for_threshold_stage_logic_tree_mean_newParallelPartition.R │ │ │ │ ├── compute_mean_exrate_upper_CI.R │ │ │ │ ├── compute_sum_of_percentiles.R │ │ │ │ ├── exceedance_rate_raster_calculations.R │ │ │ │ ├── make_directory_structure.sh │ │ │ │ ├── make_exceedance_rate_jobs.R │ │ │ │ ├── make_pdf.sh │ │ │ │ ├── make_vrt_mean_variance_CI_summed_sources.sh │ │ │ │ ├── make_vrt_percentiles.sh │ │ │ │ ├── move_max_stage_exceedance_rate_rasters_into_subfolder.sh │ │ │ │ ├── ptha18-BunburyBusseltonRevised-sealevel60cm │ │ │ │ ├── README.md │ │ │ │ ├── highres_epistemic_uncertainty │ │ │ │ │ └── README.md │ │ │ │ ├── highres_with_variance │ │ │ │ │ └── README.md │ │ │ │ └── max_stage_exceedance_rates │ │ │ │ │ ├── README.md │ │ │ │ │ ├── compute_banded_stages.R │ │ │ │ │ ├── compute_exrates_multiple_stages.R │ │ │ │ │ └── make_vrt.sh │ │ │ │ ├── run_compute_exceedance_rates_at_epistemic_uncertainty_RUNDIR_PERCENTILE_LOWER_UPPER.sh │ │ │ │ ├── run_compute_exceedance_rates_for_threshold_depth_logic_tree_mean_newParallelPartition.sh │ │ │ │ ├── run_compute_exceedance_rates_for_threshold_stage_logic_tree_mean_newParallelPartition.sh │ │ │ │ └── test_compute_exceedance_rates_at_epistemic_uncertainty.R │ │ ├── analysis_NewVasseDrainOpenBunburyFloodgate │ │ │ ├── README.md │ │ │ ├── check_log_files │ │ │ │ ├── README.md │ │ │ │ └── check_log_files.R │ │ │ ├── jatwc_to_inundation │ │ │ │ ├── README.md │ │ │ │ ├── application_specific_metadata.R │ │ │ │ ├── compute_max_depths_for_marine_warning_scenarios.R │ │ │ │ ├── compute_scenario_statistics_in_zone.R │ │ │ │ ├── convert_markdown_to_pdf.sh │ │ │ │ ├── convert_raster_zones_to_polygons_with_PTHA_limits.R │ │ │ │ ├── copy_elevation_rasters_locally.R │ │ │ │ ├── make_elevation_contours.R │ │ │ │ ├── make_vrt.R │ │ │ │ └── map_threat_levels_in_zone.R │ │ │ ├── max_stage_at_a_point │ │ │ │ ├── README.md │ │ │ │ ├── check_hillarys.R │ │ │ │ ├── extract_max_stage_at_a_point.R │ │ │ │ ├── plot_offshore_vs_onshore_stage.R │ │ │ │ └── run_a_few.sh │ │ │ └── probabilistic_inundation │ │ │ │ ├── README.md │ │ │ │ ├── R_431_NCI_modules.sh │ │ │ │ ├── application_specific_file_metadata.R │ │ │ │ ├── compute_arrival_time_minima_and_scenario_average.R │ │ │ │ ├── compute_binned_thresholds_matching_exrate_from_set_of_exrate_rasters.R │ │ │ │ ├── compute_exceedance_rates_at_epistemic_uncertainty_percentile.R │ │ │ │ ├── compute_exceedance_rates_at_logic_tree_mean.R │ │ │ │ ├── compute_mean_exrate_upper_CI.R │ │ │ │ ├── compute_sum_of_percentiles.R │ │ │ │ ├── compute_threshold_at_exceedance_rate_of_epistemic_uncertainty_percentile.R │ │ │ │ ├── epistemic_uncertainty_functions.R │ │ │ │ ├── exceedance_rate_raster_calculations.R │ │ │ │ ├── make_directory_structure.sh │ │ │ │ ├── make_exceedance_rate_jobs.R │ │ │ │ ├── make_threshold_epistemic_uncertainty_jobs.R │ │ │ │ ├── run_compute_arrival_time_minima_and_scenario_average.sh │ │ │ │ ├── run_compute_exceedance_rates_at_epistemic_uncertainty_VARIABLE_SOURCEZONE_PERCENTILE_LOWER_UPPER_EXCEEDANCETHRESHOLD.sh │ │ │ │ ├── run_compute_exceedance_rates_for_threshold_depth_logic_tree_mean.sh │ │ │ │ ├── run_compute_exceedance_rates_for_threshold_max_stages_logic_tree_mean.sh │ │ │ │ ├── run_compute_exceedance_rates_for_threshold_max_stages_logic_tree_mean_sapphirerapids.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_DEPTH___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_FLUX___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_SPEED___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_STAGE___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── test_compute_exceedance_rates_at_epistemic_uncertainty.R │ │ │ │ ├── test_compute_threshold_at_exceedance_rate_of_epistemic_uncertainty.R │ │ │ │ ├── test_exceedance_rate_raster_calculations.R │ │ │ │ └── tidy_lower_bounds_in_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile.R │ │ ├── analysis_shutfloodgate │ │ │ ├── README.md │ │ │ ├── check_log_files │ │ │ │ ├── README.md │ │ │ │ └── check_log_files.R │ │ │ ├── jatwc_to_inundation │ │ │ │ ├── README.md │ │ │ │ ├── application_specific_metadata.R │ │ │ │ ├── compute_max_depths_for_marine_warning_scenarios.R │ │ │ │ ├── compute_scenario_statistics_in_zone.R │ │ │ │ ├── convert_markdown_to_pdf.sh │ │ │ │ ├── convert_raster_zones_to_polygons_with_PTHA_limits.R │ │ │ │ ├── copy_elevation_rasters_locally.R │ │ │ │ ├── make_elevation_contours.R │ │ │ │ ├── make_vrt.R │ │ │ │ └── map_threat_levels_in_zone.R │ │ │ ├── max_stage_at_a_point │ │ │ │ ├── README.md │ │ │ │ ├── check_hillarys.R │ │ │ │ ├── extract_max_stage_at_a_point.R │ │ │ │ ├── plot_offshore_vs_onshore_stage.R │ │ │ │ └── run_a_few.sh │ │ │ └── probabilistic_inundation │ │ │ │ ├── README.md │ │ │ │ ├── R_431_NCI_modules.sh │ │ │ │ ├── application_specific_file_metadata.R │ │ │ │ ├── compute_arrival_time_minima_and_scenario_average.R │ │ │ │ ├── compute_binned_thresholds_matching_exrate_from_set_of_exrate_rasters.R │ │ │ │ ├── compute_exceedance_rates_at_epistemic_uncertainty_percentile.R │ │ │ │ ├── compute_exceedance_rates_at_logic_tree_mean.R │ │ │ │ ├── compute_mean_exrate_upper_CI.R │ │ │ │ ├── compute_sum_of_percentiles.R │ │ │ │ ├── compute_threshold_at_exceedance_rate_of_epistemic_uncertainty_percentile.R │ │ │ │ ├── epistemic_uncertainty_functions.R │ │ │ │ ├── exceedance_rate_raster_calculations.R │ │ │ │ ├── make_directory_structure.sh │ │ │ │ ├── make_exceedance_rate_jobs.R │ │ │ │ ├── make_threshold_epistemic_uncertainty_jobs.R │ │ │ │ ├── run_compute_arrival_time_minima_and_scenario_average.sh │ │ │ │ ├── run_compute_exceedance_rates_at_epistemic_uncertainty_VARIABLE_SOURCEZONE_PERCENTILE_LOWER_UPPER_EXCEEDANCETHRESHOLD.sh │ │ │ │ ├── run_compute_exceedance_rates_for_threshold_depth_logic_tree_mean.sh │ │ │ │ ├── run_compute_exceedance_rates_for_threshold_max_stages_logic_tree_mean.sh │ │ │ │ ├── run_compute_exceedance_rates_for_threshold_max_stages_logic_tree_mean_sapphirerapids.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_DEPTH___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_FLUX___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_SPEED___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_STAGE___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── test_compute_exceedance_rates_at_epistemic_uncertainty.R │ │ │ │ ├── test_compute_threshold_at_exceedance_rate_of_epistemic_uncertainty.R │ │ │ │ ├── test_exceedance_rate_raster_calculations.R │ │ │ │ └── tidy_lower_bounds_in_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile.R │ │ ├── breakwalls │ │ │ ├── PortGeographUpdate │ │ │ │ ├── portGeographeBusselton4.csv │ │ │ │ ├── portGeographeBusselton4.dbf │ │ │ │ ├── portGeographeBusselton4.prj │ │ │ │ ├── portGeographeBusselton4.shp │ │ │ │ └── portGeographeBusselton4.shx │ │ │ ├── README.md │ │ │ ├── Vasse_diversion_drain_wall_update │ │ │ │ ├── VasseDiversionDrainWallPatch_east.csv │ │ │ │ ├── VasseDiversionDrainWallPatch_west.csv │ │ │ │ ├── create_Vasse_drain_updated_walls.R │ │ │ │ ├── distances_initial.dbf │ │ │ │ ├── distances_initial.prj │ │ │ │ ├── distances_initial.shp │ │ │ │ ├── distances_initial.shx │ │ │ │ ├── westBusselton1.csv │ │ │ │ └── westBusselton3.csv │ │ │ ├── bunbury_busselton │ │ │ │ ├── LenoxRiverBusselton1.csv │ │ │ │ ├── LenoxRiverBusselton1.dbf │ │ │ │ ├── LenoxRiverBusselton1.prj │ │ │ │ ├── LenoxRiverBusselton1.shp │ │ │ │ ├── LenoxRiverBusselton1.shx │ │ │ │ ├── LenoxRiverBusselton2.csv │ │ │ │ ├── LenoxRiverBusselton2.dbf │ │ │ │ ├── LenoxRiverBusselton2.prj │ │ │ │ ├── LenoxRiverBusselton2.shp │ │ │ │ ├── LenoxRiverBusselton2.shx │ │ │ │ ├── abbeyCkBusselton1.csv │ │ │ │ ├── abbeyCkBusselton1.dbf │ │ │ │ ├── abbeyCkBusselton1.prj │ │ │ │ ├── abbeyCkBusselton1.shp │ │ │ │ ├── abbeyCkBusselton1.shx │ │ │ │ ├── abbeyCkBusselton2.csv │ │ │ │ ├── abbeyCkBusselton2.dbf │ │ │ │ ├── abbeyCkBusselton2.prj │ │ │ │ ├── abbeyCkBusselton2.shp │ │ │ │ ├── abbeyCkBusselton2.shx │ │ │ │ ├── bunburyWall1.csv │ │ │ │ ├── bunburyWall1.dbf │ │ │ │ ├── bunburyWall1.prj │ │ │ │ ├── bunburyWall1.shp │ │ │ │ ├── bunburyWall1.shx │ │ │ │ ├── bunburyWall2.csv │ │ │ │ ├── bunburyWall2.dbf │ │ │ │ ├── bunburyWall2.prj │ │ │ │ ├── bunburyWall2.shp │ │ │ │ ├── bunburyWall2.shx │ │ │ │ ├── bunburyWall3.csv │ │ │ │ ├── bunburyWall3.dbf │ │ │ │ ├── bunburyWall3.prj │ │ │ │ ├── bunburyWall3.shp │ │ │ │ ├── bunburyWall3.shx │ │ │ │ ├── bunburyWall4.csv │ │ │ │ ├── bunburyWall4.dbf │ │ │ │ ├── bunburyWall4.prj │ │ │ │ ├── bunburyWall4.shp │ │ │ │ ├── bunburyWall4.shx │ │ │ │ ├── localHighBusselton1.csv │ │ │ │ ├── localHighBusselton1.dbf │ │ │ │ ├── localHighBusselton1.prj │ │ │ │ ├── localHighBusselton1.shp │ │ │ │ ├── localHighBusselton1.shx │ │ │ │ ├── localHighBusselton2.csv │ │ │ │ ├── localHighBusselton2.dbf │ │ │ │ ├── localHighBusselton2.prj │ │ │ │ ├── localHighBusselton2.shp │ │ │ │ ├── localHighBusselton2.shx │ │ │ │ ├── localHighBusselton3.csv │ │ │ │ ├── localHighBusselton3.dbf │ │ │ │ ├── localHighBusselton3.prj │ │ │ │ ├── localHighBusselton3.shp │ │ │ │ ├── localHighBusselton3.shx │ │ │ │ ├── lockeBusselton1.csv │ │ │ │ ├── lockeBusselton1.dbf │ │ │ │ ├── lockeBusselton1.prj │ │ │ │ ├── lockeBusselton1.shp │ │ │ │ ├── lockeBusselton1.shx │ │ │ │ ├── lockeBusselton2.csv │ │ │ │ ├── lockeBusselton2.dbf │ │ │ │ ├── lockeBusselton2.prj │ │ │ │ ├── lockeBusselton2.shp │ │ │ │ ├── lockeBusselton2.shx │ │ │ │ ├── marybrookeBusselton1.csv │ │ │ │ ├── marybrookeBusselton1.dbf │ │ │ │ ├── marybrookeBusselton1.prj │ │ │ │ ├── marybrookeBusselton1.shp │ │ │ │ ├── marybrookeBusselton1.shx │ │ │ │ ├── marybrookeBusselton2.csv │ │ │ │ ├── marybrookeBusselton2.dbf │ │ │ │ ├── marybrookeBusselton2.prj │ │ │ │ ├── marybrookeBusselton2.shp │ │ │ │ ├── marybrookeBusselton2.shx │ │ │ │ ├── peppermintGrove1.csv │ │ │ │ ├── peppermintGrove1.dbf │ │ │ │ ├── peppermintGrove1.prj │ │ │ │ ├── peppermintGrove1.shp │ │ │ │ ├── peppermintGrove1.shx │ │ │ │ ├── peppermintGrove2.csv │ │ │ │ ├── peppermintGrove2.dbf │ │ │ │ ├── peppermintGrove2.prj │ │ │ │ ├── peppermintGrove2.shp │ │ │ │ ├── peppermintGrove2.shx │ │ │ │ ├── portGeographeBusselton1.csv │ │ │ │ ├── portGeographeBusselton1.dbf │ │ │ │ ├── portGeographeBusselton1.prj │ │ │ │ ├── portGeographeBusselton1.shp │ │ │ │ ├── portGeographeBusselton1.shx │ │ │ │ ├── portGeographeBusselton2.csv │ │ │ │ ├── portGeographeBusselton2.dbf │ │ │ │ ├── portGeographeBusselton2.prj │ │ │ │ ├── portGeographeBusselton2.shp │ │ │ │ ├── portGeographeBusselton2.shx │ │ │ │ ├── portGeographeBusselton3.csv │ │ │ │ ├── portGeographeBusselton3.dbf │ │ │ │ ├── portGeographeBusselton3.prj │ │ │ │ ├── portGeographeBusselton3.shp │ │ │ │ ├── portGeographeBusselton3.shx │ │ │ │ ├── westBusselton1.csv │ │ │ │ ├── westBusselton1.dbf │ │ │ │ ├── westBusselton1.prj │ │ │ │ ├── westBusselton1.shp │ │ │ │ ├── westBusselton1.shx │ │ │ │ ├── westBusselton2.csv │ │ │ │ ├── westBusselton2.dbf │ │ │ │ ├── westBusselton2.prj │ │ │ │ ├── westBusselton2.shp │ │ │ │ ├── westBusselton2.shx │ │ │ │ ├── westBusselton3.csv │ │ │ │ ├── westBusselton3.dbf │ │ │ │ ├── westBusselton3.prj │ │ │ │ ├── westBusselton3.shp │ │ │ │ ├── westBusselton3.shx │ │ │ │ ├── westMaryBusselton1.csv │ │ │ │ ├── westMaryBusselton1.dbf │ │ │ │ ├── westMaryBusselton1.prj │ │ │ │ ├── westMaryBusselton1.shp │ │ │ │ ├── westMaryBusselton1.shx │ │ │ │ ├── westMaryBusselton2.csv │ │ │ │ ├── westMaryBusselton2.dbf │ │ │ │ ├── westMaryBusselton2.prj │ │ │ │ ├── westMaryBusselton2.shp │ │ │ │ └── westMaryBusselton2.shx │ │ │ ├── bunbury_floodgate │ │ │ │ ├── TEMP_POINTS_BED.dbf │ │ │ │ ├── TEMP_POINTS_BED.prj │ │ │ │ ├── TEMP_POINTS_BED.shp │ │ │ │ ├── TEMP_POINTS_BED.shx │ │ │ │ ├── bunbury_floodgate.csv │ │ │ │ ├── bunbury_floodgate_bed_enforcement.csv │ │ │ │ └── make_bed_lines.R │ │ │ ├── convert_high_friction_jetty_to_csv.R │ │ │ ├── convert_lines_to_lon_lat_maxelev.R │ │ │ ├── high_friction_jetty │ │ │ │ ├── high_friction_jetty.csv │ │ │ │ ├── high_friction_jetty.dbf │ │ │ │ ├── high_friction_jetty.prj │ │ │ │ ├── high_friction_jetty.shp │ │ │ │ └── high_friction_jetty.shx │ │ │ ├── make_breakwalls.R │ │ │ ├── make_breakwalls_list.R │ │ │ ├── perth │ │ │ │ ├── geraldton1.csv │ │ │ │ ├── geraldton1.dbf │ │ │ │ ├── geraldton1.prj │ │ │ │ ├── geraldton1.shp │ │ │ │ ├── geraldton1.shx │ │ │ │ ├── geraldton2.csv │ │ │ │ ├── geraldton2.dbf │ │ │ │ ├── geraldton2.prj │ │ │ │ ├── geraldton2.shp │ │ │ │ ├── geraldton2.shx │ │ │ │ ├── geraldton3.csv │ │ │ │ ├── geraldton3.dbf │ │ │ │ ├── geraldton3.prj │ │ │ │ ├── geraldton3.shp │ │ │ │ ├── geraldton3.shx │ │ │ │ ├── geraldton4.csv │ │ │ │ ├── geraldton4.dbf │ │ │ │ ├── geraldton4.prj │ │ │ │ ├── geraldton4.shp │ │ │ │ ├── geraldton4.shx │ │ │ │ ├── geraldton5.csv │ │ │ │ ├── geraldton5.dbf │ │ │ │ ├── geraldton5.prj │ │ │ │ ├── geraldton5.shp │ │ │ │ ├── geraldton5.shx │ │ │ │ ├── geraldton6.csv │ │ │ │ ├── geraldton6.dbf │ │ │ │ ├── geraldton6.prj │ │ │ │ ├── geraldton6.shp │ │ │ │ ├── geraldton6.shx │ │ │ │ ├── geraldton7.csv │ │ │ │ ├── geraldton7.dbf │ │ │ │ ├── geraldton7.prj │ │ │ │ ├── geraldton7.shp │ │ │ │ ├── geraldton7.shx │ │ │ │ ├── hillaries2.csv │ │ │ │ ├── hillaries2.dbf │ │ │ │ ├── hillaries2.prj │ │ │ │ ├── hillaries2.qpj │ │ │ │ ├── hillaries2.shp │ │ │ │ ├── hillaries2.shx │ │ │ │ ├── hillarys1.csv │ │ │ │ ├── hillarys1.dbf │ │ │ │ ├── hillarys1.prj │ │ │ │ ├── hillarys1.qpj │ │ │ │ ├── hillarys1.shp │ │ │ │ ├── hillarys1.shx │ │ │ │ ├── jurianBay.csv │ │ │ │ ├── jurianBay.dbf │ │ │ │ ├── jurianBay.prj │ │ │ │ ├── jurianBay.shp │ │ │ │ ├── jurianBay.shx │ │ │ │ ├── jurianBay2.csv │ │ │ │ ├── jurianBay2.dbf │ │ │ │ ├── jurianBay2.prj │ │ │ │ ├── jurianBay2.shp │ │ │ │ ├── jurianBay2.shx │ │ │ │ ├── mandurah1.csv │ │ │ │ ├── mandurah1.dbf │ │ │ │ ├── mandurah1.prj │ │ │ │ ├── mandurah1.shp │ │ │ │ ├── mandurah1.shx │ │ │ │ ├── mandurah2.csv │ │ │ │ ├── mandurah2.dbf │ │ │ │ ├── mandurah2.prj │ │ │ │ ├── mandurah2.shp │ │ │ │ ├── mandurah2.shx │ │ │ │ ├── northPerth.csv │ │ │ │ ├── northPerth.dbf │ │ │ │ ├── northPerth.prj │ │ │ │ ├── northPerth.shp │ │ │ │ ├── northPerth.shx │ │ │ │ ├── southperth.csv │ │ │ │ ├── southperth.dbf │ │ │ │ ├── southperth.prj │ │ │ │ ├── southperth.qpj │ │ │ │ ├── southperth.shp │ │ │ │ ├── southperth.shx │ │ │ │ ├── southperth2.csv │ │ │ │ ├── southperth2.dbf │ │ │ │ ├── southperth2.prj │ │ │ │ ├── southperth2.qpj │ │ │ │ ├── southperth2.shp │ │ │ │ ├── southperth2.shx │ │ │ │ ├── southperth3.csv │ │ │ │ ├── southperth3.dbf │ │ │ │ ├── southperth3.prj │ │ │ │ ├── southperth3.qpj │ │ │ │ ├── southperth3.shp │ │ │ │ ├── southperth3.shx │ │ │ │ ├── southperth4.csv │ │ │ │ ├── southperth4.dbf │ │ │ │ ├── southperth4.prj │ │ │ │ ├── southperth4.qpj │ │ │ │ ├── southperth4.shp │ │ │ │ ├── southperth4.shx │ │ │ │ ├── southperth5.csv │ │ │ │ ├── southperth5.dbf │ │ │ │ ├── southperth5.prj │ │ │ │ ├── southperth5.qpj │ │ │ │ ├── southperth5.shp │ │ │ │ ├── southperth5.shx │ │ │ │ ├── southperth6.csv │ │ │ │ ├── southperth6.dbf │ │ │ │ ├── southperth6.prj │ │ │ │ ├── southperth6.qpj │ │ │ │ ├── southperth6.shp │ │ │ │ ├── southperth6.shx │ │ │ │ ├── southperth7.csv │ │ │ │ ├── southperth7.dbf │ │ │ │ ├── southperth7.prj │ │ │ │ ├── southperth7.qpj │ │ │ │ ├── southperth7.shp │ │ │ │ ├── southperth7.shx │ │ │ │ ├── southperth8.csv │ │ │ │ ├── southperth8.dbf │ │ │ │ ├── southperth8.prj │ │ │ │ ├── southperth8.shp │ │ │ │ ├── southperth8.shx │ │ │ │ ├── southperth9.csv │ │ │ │ ├── southperth9.dbf │ │ │ │ ├── southperth9.prj │ │ │ │ ├── southperth9.shp │ │ │ │ ├── southperth9.shx │ │ │ │ ├── swanCanning1.csv │ │ │ │ ├── swanCanning1.dbf │ │ │ │ ├── swanCanning1.prj │ │ │ │ ├── swanCanning1.qpj │ │ │ │ ├── swanCanning1.shp │ │ │ │ ├── swanCanning1.shx │ │ │ │ ├── swanCanning2.csv │ │ │ │ ├── swanCanning2.dbf │ │ │ │ ├── swanCanning2.prj │ │ │ │ ├── swanCanning2.qpj │ │ │ │ ├── swanCanning2.shp │ │ │ │ ├── swanCanning2.shx │ │ │ │ ├── swanCanning3.csv │ │ │ │ ├── swanCanning3.dbf │ │ │ │ ├── swanCanning3.prj │ │ │ │ ├── swanCanning3.qpj │ │ │ │ ├── swanCanning3.shp │ │ │ │ ├── swanCanning3.shx │ │ │ │ ├── swanCanning4.csv │ │ │ │ ├── swanCanning4.dbf │ │ │ │ ├── swanCanning4.prj │ │ │ │ ├── swanCanning4.qpj │ │ │ │ ├── swanCanning4.shp │ │ │ │ ├── swanCanning4.shx │ │ │ │ ├── swanCanning5.csv │ │ │ │ ├── swanCanning5.dbf │ │ │ │ ├── swanCanning5.prj │ │ │ │ ├── swanCanning5.qpj │ │ │ │ ├── swanCanning5.shp │ │ │ │ ├── swanCanning5.shx │ │ │ │ ├── twoRocks.csv │ │ │ │ ├── twoRocks.dbf │ │ │ │ ├── twoRocks.prj │ │ │ │ ├── twoRocks.shp │ │ │ │ ├── twoRocks.shx │ │ │ │ ├── twoRocks2.csv │ │ │ │ ├── twoRocks2.dbf │ │ │ │ ├── twoRocks2.prj │ │ │ │ ├── twoRocks2.shp │ │ │ │ └── twoRocks2.shx │ │ │ ├── swals_breakwall_files.txt │ │ │ └── wonnerup_floodgate │ │ │ │ ├── wonnerup_floodgate_1.csv │ │ │ │ └── wonnerup_floodgate_2.csv │ │ ├── elevation │ │ │ ├── README.md │ │ │ ├── bridges_to_remove │ │ │ │ ├── bridges_to_remove.dbf │ │ │ │ ├── bridges_to_remove.prj │ │ │ │ ├── bridges_to_remove.shp │ │ │ │ ├── bridges_to_remove.shx │ │ │ │ ├── bridges_to_remove_1.csv │ │ │ │ ├── bridges_to_remove_10.csv │ │ │ │ ├── bridges_to_remove_11.csv │ │ │ │ ├── bridges_to_remove_12.csv │ │ │ │ ├── bridges_to_remove_13.csv │ │ │ │ ├── bridges_to_remove_14.csv │ │ │ │ ├── bridges_to_remove_15.csv │ │ │ │ ├── bridges_to_remove_16.csv │ │ │ │ ├── bridges_to_remove_17.csv │ │ │ │ ├── bridges_to_remove_18.csv │ │ │ │ ├── bridges_to_remove_19.csv │ │ │ │ ├── bridges_to_remove_2.csv │ │ │ │ ├── bridges_to_remove_20.csv │ │ │ │ ├── bridges_to_remove_21.csv │ │ │ │ ├── bridges_to_remove_22.csv │ │ │ │ ├── bridges_to_remove_23.csv │ │ │ │ ├── bridges_to_remove_24.csv │ │ │ │ ├── bridges_to_remove_25.csv │ │ │ │ ├── bridges_to_remove_26.csv │ │ │ │ ├── bridges_to_remove_27.csv │ │ │ │ ├── bridges_to_remove_28.csv │ │ │ │ ├── bridges_to_remove_29.csv │ │ │ │ ├── bridges_to_remove_3.csv │ │ │ │ ├── bridges_to_remove_30.csv │ │ │ │ ├── bridges_to_remove_31.csv │ │ │ │ ├── bridges_to_remove_32.csv │ │ │ │ ├── bridges_to_remove_33.csv │ │ │ │ ├── bridges_to_remove_34.csv │ │ │ │ ├── bridges_to_remove_35.csv │ │ │ │ ├── bridges_to_remove_36.csv │ │ │ │ ├── bridges_to_remove_37.csv │ │ │ │ ├── bridges_to_remove_38.csv │ │ │ │ ├── bridges_to_remove_39.csv │ │ │ │ ├── bridges_to_remove_4.csv │ │ │ │ ├── bridges_to_remove_40.csv │ │ │ │ ├── bridges_to_remove_41.csv │ │ │ │ ├── bridges_to_remove_42.csv │ │ │ │ ├── bridges_to_remove_43.csv │ │ │ │ ├── bridges_to_remove_5.csv │ │ │ │ ├── bridges_to_remove_6.csv │ │ │ │ ├── bridges_to_remove_7.csv │ │ │ │ ├── bridges_to_remove_8.csv │ │ │ │ └── bridges_to_remove_9.csv │ │ │ ├── convert_polygon_subdirs_to_csv.R │ │ │ ├── force_elevation_to_zero_or_below_files.txt │ │ │ ├── initial_stage_40cmAHD │ │ │ │ ├── initial_stage_40cmAHD.csv │ │ │ │ ├── initial_stage_40cmAHD.dbf │ │ │ │ ├── initial_stage_40cmAHD.prj │ │ │ │ ├── initial_stage_40cmAHD.shp │ │ │ │ └── initial_stage_40cmAHD.shx │ │ │ ├── make_swals_elevation_files_preference_list.R │ │ │ ├── make_swals_elevation_files_preference_list_HOME_MACHINE.R │ │ │ ├── swals_elevation_files_in_preference_order.txt │ │ │ └── swals_elevation_files_in_preference_order_2024_update.txt │ │ ├── gauges │ │ │ ├── gauges_extra │ │ │ │ ├── TideGauges_Lotiro2010.csv │ │ │ │ ├── gauges_extra.dbf │ │ │ │ ├── gauges_extra.prj │ │ │ │ ├── gauges_extra.qpj │ │ │ │ ├── gauges_extra.shp │ │ │ │ └── gauges_extra.shx │ │ │ └── make_gauges.R │ │ ├── multidomain_design │ │ │ ├── README.md │ │ │ ├── aggregate_boxes.R │ │ │ ├── create_boxes.R │ │ │ └── edit_boxes.R │ │ ├── sources │ │ │ └── README.md │ │ └── swals │ │ │ ├── DEBUG_run_with_old_nesting.sh │ │ │ ├── FujiSatake2007_time_varying_forcing_instantaneous.csv │ │ │ ├── FujiSatake2007_time_varying_forcing_realistic.csv │ │ │ ├── OUTPUTS │ │ │ ├── README_FILE_LOCATIONS.md │ │ │ └── copy_model_outputs_to_mdss.sh │ │ │ ├── README.md │ │ │ ├── R_421_NCI_modules.sh │ │ │ ├── SWALS_ifort_modules_2022.sh │ │ │ ├── SWALS_ifort_modules_2023.sh │ │ │ ├── SWALS_ifort_modules_2023_llvm.sh │ │ │ ├── bzip2_some_files.R │ │ │ ├── create_plots_from_tarred_multidomain_dirs.R │ │ │ ├── create_random_ptha_qsub_scripts_sealevel60cm.R │ │ │ ├── create_tarred_rasters_from_tarred_multidomains.R │ │ │ ├── load_balance_files │ │ │ ├── load_balance_220323_8MPI_sapphirerapids.txt │ │ │ ├── load_balance_301122_24MPI.txt │ │ │ └── load_balance_301122_24MPIb.txt │ │ │ ├── load_balance_script.R │ │ │ ├── make_domains_shapefile.R │ │ │ ├── make_folders_and_copy_gauges.R │ │ │ ├── make_folders_and_copy_rasters.R │ │ │ ├── make_initial_conditions_complex_historical_events.R │ │ │ ├── make_model_ifort │ │ │ ├── make_model_ifort_OLD_NESTING │ │ │ ├── make_model_ifort_sapphirerapids │ │ │ ├── make_model_ifort_stability_tracking │ │ │ ├── make_rasters.R │ │ │ ├── model.f90 │ │ │ ├── model_local_routines.f90 │ │ │ ├── plot_BunburyBeacon_gauge.R │ │ │ ├── plot_gauges_perth_sumatra2004.R │ │ │ ├── plot_gauges_perth_sumatra2005.R │ │ │ ├── plots │ │ │ ├── plot_all.R │ │ │ ├── plot_gauges_generic_include.R │ │ │ ├── plot_sumatra2004.R │ │ │ └── plot_sumatra2005.R │ │ │ ├── run_Fuji_Sumatra2005_6_nodes.sh │ │ │ ├── run_Fuji_Sumatra2005_6_nodes_newVasseData.sh │ │ │ ├── run_bzip2_some_files.sh │ │ │ ├── run_create_tarred_rasters_from_tarred_multidomains.sh │ │ │ ├── run_large_source_6nodes.sh │ │ │ ├── run_large_source_6nodes_newVasse.sh │ │ │ ├── run_model_Fuji2004_6_nodes.sh │ │ │ ├── run_model_Fuji2004_6_nodes_newVasseData.sh │ │ │ ├── run_raster_creator.sh │ │ │ ├── run_small_source_6nodes.sh │ │ │ ├── run_troublesome_source_6nodes.sh │ │ │ ├── set_max_stage_to_NA_where_max_flux_is_zero.R │ │ │ └── tar_and_remove_matching_dir.R │ ├── greater_perth_revised2023 │ │ ├── GENERAL_GUIDANCE_ON_MODEL_SETUP.md │ │ ├── README.md │ │ ├── USEFUL_TOOLS.md │ │ ├── analysis │ │ │ ├── README.md │ │ │ ├── check_log_files │ │ │ │ ├── README.md │ │ │ │ └── check_log_files.R │ │ │ ├── jatwc_to_inundation │ │ │ │ ├── README.md │ │ │ │ ├── application_specific_metadata.R │ │ │ │ ├── compute_max_depths_for_marine_warning_scenarios.R │ │ │ │ ├── compute_scenario_statistics_in_zone.R │ │ │ │ ├── convert_raster_zones_to_polygons_with_PTHA_limits.R │ │ │ │ ├── copy_elevation_rasters_locally.R │ │ │ │ ├── make_elevation_contours.R │ │ │ │ ├── make_vrt.R │ │ │ │ └── map_threat_levels_in_zone.R │ │ │ ├── max_stage_at_a_point │ │ │ │ ├── README.md │ │ │ │ ├── check_hillarys.R │ │ │ │ ├── extract_max_stage_at_a_point.R │ │ │ │ ├── extract_max_stage_at_a_point_extended.R │ │ │ │ ├── plot_offshore_vs_onshore_stage.R │ │ │ │ └── run_a_few.sh │ │ │ └── probabilistic_inundation │ │ │ │ ├── README.md │ │ │ │ ├── R_431_NCI_modules.sh │ │ │ │ ├── application_specific_file_metadata.R │ │ │ │ ├── compute_arrival_time_minima_and_scenario_average.R │ │ │ │ ├── compute_binned_thresholds_matching_exrate_from_set_of_exrate_rasters.R │ │ │ │ ├── compute_exceedance_rates_at_epistemic_uncertainty_percentile.R │ │ │ │ ├── compute_exceedance_rates_at_logic_tree_mean.R │ │ │ │ ├── compute_mean_exrate_upper_CI.R │ │ │ │ ├── compute_sum_of_percentiles.R │ │ │ │ ├── compute_threshold_at_exceedance_rate_of_epistemic_uncertainty_percentile.R │ │ │ │ ├── epistemic_uncertainty_functions.R │ │ │ │ ├── exceedance_rate_raster_calculations.R │ │ │ │ ├── make_directory_structure.sh │ │ │ │ ├── make_exceedance_rate_jobs.R │ │ │ │ ├── make_threshold_epistemic_uncertainty_jobs.R │ │ │ │ ├── run_compute_arrival_time_minima_and_scenario_average.sh │ │ │ │ ├── run_compute_exceedance_rates_at_epistemic_uncertainty_VARIABLE_SOURCEZONE_PERCENTILE_LOWER_UPPER_EXCEEDANCETHRESHOLD.sh │ │ │ │ ├── run_compute_exceedance_rates_for_threshold_depth_logic_tree_mean.sh │ │ │ │ ├── run_compute_exceedance_rates_for_threshold_max_stages_logic_tree_mean.sh │ │ │ │ ├── run_compute_exceedance_rates_for_threshold_max_stages_logic_tree_mean_sapphirerapids.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_DEPTH___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_FLUX___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_SPEED___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_STAGE___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── test_compute_exceedance_rates_at_epistemic_uncertainty.R │ │ │ │ ├── test_compute_threshold_at_exceedance_rate_of_epistemic_uncertainty.R │ │ │ │ ├── test_exceedance_rate_raster_calculations.R │ │ │ │ └── tidy_lower_bounds_in_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile.R │ │ ├── breakwalls │ │ │ ├── README.md │ │ │ ├── convert_lines_to_lon_lat_maxelev.R │ │ │ ├── make_breakwalls.R │ │ │ └── make_breakwalls_list.R │ │ ├── convert_markdown_to_pdf.sh │ │ ├── elevation │ │ │ ├── README.md │ │ │ └── make_swals_elevation_files_preference_list.R │ │ ├── gauges │ │ │ ├── README.md │ │ │ ├── gauges_extra │ │ │ │ ├── gauges_extra.dbf │ │ │ │ ├── gauges_extra.prj │ │ │ │ ├── gauges_extra.qpj │ │ │ │ ├── gauges_extra.shp │ │ │ │ └── gauges_extra.shx │ │ │ └── make_gauges.R │ │ ├── inverts │ │ │ ├── README.md │ │ │ ├── make_inverts_list_have_fullpath.R │ │ │ └── make_inverts_perth.R │ │ ├── make_pdf.sh │ │ ├── multidomain_design │ │ │ ├── README.md │ │ │ ├── aggregate_boxes.R │ │ │ ├── create_boxes.R │ │ │ └── edit_boxes.R │ │ ├── sources │ │ │ └── README.md │ │ └── swals │ │ │ ├── OUTPUTS │ │ │ ├── README_FILE_LOCATIONS.md │ │ │ └── copy_model_outputs_to_mdss.sh │ │ │ ├── README.md │ │ │ ├── R_431_NCI_modules.sh │ │ │ ├── SWALS_ifort_modules_2023_llvm_B.sh │ │ │ ├── bzip2_some_files.R │ │ │ ├── convert_markdown_to_pdf.sh │ │ │ ├── create_plots_from_tarred_multidomain_dirs.R │ │ │ ├── create_random_ptha_qsub_scripts_sealevel60cm.R │ │ │ ├── create_tarred_rasters_from_tarred_multidomains.R │ │ │ ├── load_balance_script.R │ │ │ ├── make_domains_shapefile.R │ │ │ ├── make_folders_and_copy_rasters.R │ │ │ ├── make_initial_conditions_complex_historical_events.R │ │ │ ├── make_model_ifort_sapphirerapids │ │ │ ├── make_rasters.R │ │ │ ├── model.f90 │ │ │ ├── model_initial_conditions_mod.f90 │ │ │ ├── model_multidomain_design_mod.f90 │ │ │ ├── multidomain_design_control_NNL4_defaultres.nml │ │ │ ├── multidomain_design_control_NNL4_defaultres_defaultloadbalance.nml │ │ │ ├── multidomain_design_control_NNL4_lowres.nml │ │ │ ├── plot_gauges_perth_sumatra2004.R │ │ │ ├── plot_gauges_perth_sumatra2005.R │ │ │ ├── plots │ │ │ ├── process_gauges_generic_include.R │ │ │ ├── process_gauges_sumatra2004.R │ │ │ └── process_gauges_sumatra2005.R │ │ │ ├── report_domain_runtimes.R │ │ │ ├── run_Sumatra2004_time_varying.sh │ │ │ ├── run_Sumatra2004_time_varying_lowres.sh │ │ │ ├── run_Sumatra2005.sh │ │ │ ├── run_Sumatra2005_lowres.sh │ │ │ ├── run_bzip2_some_files.sh │ │ │ ├── run_create_tarred_rasters_from_tarred_multidomains.sh │ │ │ ├── run_extreme_source.sh │ │ │ ├── run_extreme_source_lowres.sh │ │ │ ├── run_small_source.sh │ │ │ ├── run_test_model_sapphirerapids.sh │ │ │ ├── run_test_model_with_load_balance_sapphirerapids.sh │ │ │ └── tar_and_remove_matching_dir.R │ ├── midwest │ │ ├── GENERAL_GUIDANCE_ON_MODEL_SETUP.md │ │ ├── README.md │ │ ├── USEFUL_TOOLS.md │ │ ├── WORKFLOW.md │ │ ├── analysis │ │ │ ├── README.md │ │ │ ├── check_log_files │ │ │ │ ├── README.md │ │ │ │ └── check_log_files.R │ │ │ ├── jatwc_to_inundation │ │ │ │ ├── README.md │ │ │ │ ├── application_specific_metadata.R │ │ │ │ ├── compute_max_depths_for_marine_warning_scenarios.R │ │ │ │ ├── compute_scenario_statistics_in_zone.R │ │ │ │ ├── convert_raster_zones_to_polygons_with_PTHA_limits.R │ │ │ │ ├── convert_raster_zones_to_polygons_with_PTHA_limits.sh │ │ │ │ ├── copy_elevation_rasters_locally.R │ │ │ │ ├── make_elevation_contours.R │ │ │ │ ├── make_vrt.R │ │ │ │ └── map_threat_levels_in_zone.R │ │ │ ├── max_stage_at_a_point │ │ │ │ ├── README.md │ │ │ │ ├── check_hillarys.R │ │ │ │ ├── extract_max_stage_at_a_point.R │ │ │ │ ├── plot_offshore_vs_onshore_stage.R │ │ │ │ └── run_a_few.pbs │ │ │ └── probabilistic_inundation │ │ │ │ ├── README.md │ │ │ │ ├── R_431_NCI_modules.sh │ │ │ │ ├── application_specific_file_metadata.R │ │ │ │ ├── compute_arrival_time_minima_and_scenario_average.R │ │ │ │ ├── compute_binned_thresholds_matching_exrate_from_set_of_exrate_rasters.R │ │ │ │ ├── compute_exceedance_rates_at_epistemic_uncertainty_percentile.R │ │ │ │ ├── compute_exceedance_rates_at_logic_tree_mean.R │ │ │ │ ├── compute_mean_exrate_upper_CI.R │ │ │ │ ├── compute_sum_of_percentiles.R │ │ │ │ ├── compute_threshold_at_exceedance_rate_of_epistemic_uncertainty_percentile.R │ │ │ │ ├── epistemic_uncertainty_functions.R │ │ │ │ ├── exceedance_rate_raster_calculations.R │ │ │ │ ├── make_directory_structure.sh │ │ │ │ ├── make_exceedance_rate_jobs.R │ │ │ │ ├── make_threshold_epistemic_uncertainty_jobs.R │ │ │ │ ├── modules_R_431.sh │ │ │ │ ├── run_compute_arrival_time_minima_and_scenario_average.sh │ │ │ │ ├── run_compute_exceedance_rates_at_epistemic_uncertainty_VARIABLE_SOURCEZONE_PERCENTILE_LOWER_UPPER_EXCEEDANCETHRESHOLD.pbs │ │ │ │ ├── run_compute_exceedance_rates_at_epistemic_uncertainty_VARIABLE_SOURCEZONE_PERCENTILE_LOWER_UPPER_EXCEEDANCETHRESHOLD.sh │ │ │ │ ├── run_compute_exceedance_rates_for_threshold_depth_logic_tree_mean.sh │ │ │ │ ├── run_compute_exceedance_rates_for_threshold_max_stages_logic_tree_mean.sh │ │ │ │ ├── run_compute_exceedance_rates_for_threshold_max_stages_logic_tree_mean_sapphirerapids.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile.pbs │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_DEPTH___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_FLUX___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_SPEED___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_STAGE___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ │ ├── test_compute_exceedance_rates_at_epistemic_uncertainty.R │ │ │ │ ├── test_compute_threshold_at_exceedance_rate_of_epistemic_uncertainty.R │ │ │ │ ├── test_exceedance_rate_raster_calculations.R │ │ │ │ └── tidy_lower_bounds_in_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile.R │ │ ├── breakwalls │ │ │ ├── README.md │ │ │ ├── buffer_height │ │ │ │ ├── README.md │ │ │ │ ├── convert_lines_to_lon_lat_maxelev.R │ │ │ │ └── make_breakwalls.R │ │ │ ├── fixed_height │ │ │ │ └── make_breakwalls.R │ │ │ ├── make_breakwalls_list.R │ │ │ └── swals_breakwall_files.txt │ │ ├── elevation │ │ │ ├── README.md │ │ │ ├── make_swals_elevation_files_preference_list.R │ │ │ └── swals_elevation_files_in_preference_order.txt │ │ ├── gauges │ │ │ ├── README.md │ │ │ └── make_gauges.R │ │ ├── initial_stage │ │ │ ├── README.md │ │ │ ├── override_initial_stages.csv │ │ │ └── shape_to_csv.R │ │ ├── inverts │ │ │ ├── README.md │ │ │ ├── make_inverts_list_have_fullpath.R │ │ │ └── make_inverts_perth.R │ │ ├── multidomain_design │ │ │ ├── README.md │ │ │ ├── aggregate_boxes.R │ │ │ ├── create_boxes.R │ │ │ └── edit_boxes.R │ │ ├── sources │ │ │ └── README.md │ │ └── swals │ │ │ ├── README.CODE_SUMMARY.md │ │ │ ├── README.HOW_TO_RUN.md │ │ │ ├── README.md │ │ │ ├── make_model_ifort_sapphirerapids │ │ │ ├── model.f90 │ │ │ ├── model_initial_conditions_mod.f90 │ │ │ ├── model_multidomain_design_mod.f90 │ │ │ ├── modules_R_431.sh │ │ │ ├── modules_SWALS_ifort_2023_B.sh │ │ │ ├── multidomain_design_control_NNL4_defaultres.nml │ │ │ ├── multidomain_design_control_NNL4_defaultres_defaultloadbalance.nml │ │ │ ├── multidomain_design_control_NNL4_lowres.nml │ │ │ ├── plots │ │ │ ├── README.md │ │ │ ├── plot_gauges_perth_sumatra2004.R │ │ │ ├── plot_gauges_perth_sumatra2005.R │ │ │ ├── process_gauges_generic_include.R │ │ │ ├── process_gauges_sumatra2004.R │ │ │ └── process_gauges_sumatra2005.R │ │ │ ├── post_process │ │ │ ├── create_plots_from_tarred_multidomain_dirs.R │ │ │ ├── create_tarred_rasters_from_tarred_multidomains.R │ │ │ ├── create_tarred_rasters_from_tarred_multidomains.pbs │ │ │ ├── load_balance_script.R │ │ │ ├── make_domains_shapefile.R │ │ │ ├── make_folders_and_copy_rasters.R │ │ │ ├── make_rasters.R │ │ │ ├── report_domain_runtimes.R │ │ │ └── tar_and_remove_matching_dir.R │ │ │ ├── pre_process │ │ │ ├── create_random_ptha_qsub_scripts_sealevel60cm.R │ │ │ └── make_initial_conditions_complex_historical_events.R │ │ │ └── run │ │ │ ├── README.md │ │ │ ├── Sumatra2004_time_varying.pbs │ │ │ ├── Sumatra2004_time_varying_lowres.pbs │ │ │ ├── Sumatra2005.pbs │ │ │ ├── Sumatra2005_lowres.pbs │ │ │ ├── extreme_source.pbs │ │ │ ├── extreme_source_lowres.pbs │ │ │ ├── midwest_redo4.pbs │ │ │ ├── small_source.pbs │ │ │ ├── test_model_sapphirerapids.pbs │ │ │ └── test_model_with_load_balance_sapphirerapids.pbs │ └── other_derived_products │ │ ├── README.md │ │ ├── WA_tsunami_modelling_2021_2024_definitive_outputs │ │ ├── README.md │ │ ├── collate_merged_model_outputs.R │ │ ├── collate_outputs.R │ │ ├── combined_models │ │ │ ├── README.md │ │ │ ├── define_raster_output_regions.R │ │ │ └── make_rasters.R │ │ └── convert_markdown_to_pdf.sh │ │ ├── combine_raster_outputs │ │ ├── README.md │ │ ├── define_raster_output_regions.R │ │ ├── make_rasters.R │ │ └── priority_model_zones │ │ │ ├── Perth │ │ │ ├── Perth.dbf │ │ │ ├── Perth.prj │ │ │ ├── Perth.shp │ │ │ └── Perth.shx │ │ │ ├── bunbury_2models │ │ │ ├── bunbury_2models.dbf │ │ │ ├── bunbury_2models.prj │ │ │ ├── bunbury_2models.shp │ │ │ └── bunbury_2models.shx │ │ │ ├── bunkerBay │ │ │ ├── bunkerBay.dbf │ │ │ ├── bunkerBay.prj │ │ │ ├── bunkerBay.shp │ │ │ └── bunkerBay.shx │ │ │ └── midwestOrPerth │ │ │ ├── midwestOrPerth.dbf │ │ │ ├── midwestOrPerth.prj │ │ │ ├── midwestOrPerth.shp │ │ │ └── midwestOrPerth.shx │ │ └── random_figures │ │ ├── README.md │ │ ├── arrival_time │ │ ├── README.md │ │ ├── cities.R │ │ ├── osm_backdrop.R │ │ ├── plot_arrival_times.R │ │ └── plot_offshore_vs_onshore_arrival_times.R │ │ ├── max_stage_multiple_models │ │ ├── README.md │ │ └── plot_max_stage.R │ │ └── tsunami_intensity_at_1in2500_84pc │ │ ├── README.md │ │ ├── bunbury_busselton │ │ └── osm_maps_bunburyBusselton.R │ │ ├── greater_perth │ │ └── osm_maps_greater_perth.R │ │ └── midwest │ │ └── osm_maps_midwest.R ├── gladstone_2024_2025 │ ├── README.md │ ├── analysis │ │ ├── README.md │ │ ├── arrival_time │ │ │ ├── README.md │ │ │ ├── compute_arrival_time_minima_and_scenario_average.R │ │ │ └── plots │ │ │ │ ├── cities.R │ │ │ │ ├── cities_flat.R │ │ │ │ ├── onshore_arrival_time.R │ │ │ │ ├── osm_backdrop.R │ │ │ │ └── plot_arrival_times.R │ │ ├── jatwc_to_inundation │ │ │ ├── README.md │ │ │ ├── application_specific_metadata.R │ │ │ ├── compute_max_depths_for_marine_warning_scenarios.R │ │ │ ├── compute_scenario_statistics_in_zone.R │ │ │ ├── convert_raster_zones_to_polygons_with_PTHA_limits.R │ │ │ ├── copy_elevation_rasters_locally.R │ │ │ ├── make_elevation_contours.R │ │ │ ├── make_vrt.R │ │ │ ├── make_warning_vrt.sh │ │ │ ├── map_threat_levels_in_zone.R │ │ │ └── run_all_zones.pbs │ │ ├── probabilistic_inundation │ │ │ ├── README.md │ │ │ ├── application_specific_file_metadata.R │ │ │ ├── epistemic_uncertainty_functions.R │ │ │ ├── exrate_given_threshold │ │ │ │ ├── README.md │ │ │ │ ├── compute_exceedance_rates_at_epistemic_uncertainty_VARIABLE_SOURCEZONE_PERCENTILE_LOWER_UPPER_EXCEEDANCETHRESHOLD.txt │ │ │ │ ├── compute_exceedance_rates_at_epistemic_uncertainty_percentile.R │ │ │ │ ├── compute_exceedance_rates_at_logic_tree_mean.R │ │ │ │ ├── compute_exceedance_rates_for_threshold_depth_logic_tree_mean.pbs │ │ │ │ ├── compute_exceedance_rates_for_threshold_max_speeds_logic_tree_mean.pbs │ │ │ │ ├── compute_exceedance_rates_for_threshold_max_stages_logic_tree_mean.pbs │ │ │ │ ├── compute_exceedance_rates_for_threshold_max_stages_logic_tree_mean_sapphirerapids.pbs │ │ │ │ ├── compute_mean_exrate_upper_CI.R │ │ │ │ ├── compute_sum_of_percentiles.R │ │ │ │ ├── create_vrt.sh │ │ │ │ ├── exceedance_rate_raster_calculations.R │ │ │ │ ├── make_directory_structure.sh │ │ │ │ ├── make_exceedance_rate_jobs.R │ │ │ │ └── which_missing_tifs.R │ │ │ ├── plots │ │ │ │ ├── osm_exceedance_maps.R │ │ │ │ └── plot_regions │ │ │ │ │ ├── plot_regions.cpg │ │ │ │ │ ├── plot_regions.dbf │ │ │ │ │ ├── plot_regions.prj │ │ │ │ │ ├── plot_regions.shp │ │ │ │ │ └── plot_regions.shx │ │ │ ├── test │ │ │ │ ├── README.md │ │ │ │ ├── max_stage_at_a_point │ │ │ │ │ ├── README.md │ │ │ │ │ ├── extract_max_stage_at_a_point.R │ │ │ │ │ ├── extract_max_stage_at_a_point.pbs │ │ │ │ │ ├── extract_max_stage_utilities.R │ │ │ │ │ ├── locations.in.sh │ │ │ │ │ └── locations_comments.in.sh │ │ │ │ ├── test_max_stage_exrate_at_epistemic_uncertainty.pbs.R │ │ │ │ ├── test_max_stage_exrate_raster_calculations_offshore.R │ │ │ │ ├── test_max_stage_exrate_raster_calculations_rosslyn_bay.R │ │ │ │ ├── test_max_stage_threshold_at_exrate_and_epistemic_uncertainty.pbs.R │ │ │ │ └── test_neg_max_stage_vs_max_stage_threshold_rasters.R │ │ │ └── threshold_given_exrate │ │ │ │ ├── README.md │ │ │ │ ├── TEMPLATE_run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile.txt │ │ │ │ ├── compute_binned_thresholds_matching_exrate_from_set_of_exrate_rasters.R │ │ │ │ ├── compute_threshold_at_exceedance_rate_of_epistemic_uncertainty_percentile.R │ │ │ │ ├── make_threshold_epistemic_uncertainty_jobs.R │ │ │ │ ├── tidy_bounds_in_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile.R │ │ │ │ └── which_missing_tifs.R │ │ └── sea_level_rise │ │ │ ├── README.md │ │ │ ├── colour_palette.R │ │ │ ├── compute_raster_diff.R │ │ │ └── plot_slr.R │ ├── animation │ │ ├── R │ │ │ ├── combine_frame.R │ │ │ ├── make_ic.R │ │ │ ├── make_image_2d.R │ │ │ └── osm_backdrop.R │ │ ├── README.md │ │ ├── choose_scenario │ │ │ └── plot_scenario.R │ │ ├── input │ │ │ ├── custom_colours.R │ │ │ ├── kamchatka.in.R │ │ │ ├── kermadec_94.in.R │ │ │ ├── scenes.in.R │ │ │ └── solomon_90.in.R │ │ ├── make_frames.R │ │ ├── make_intro.R │ │ ├── make_outro.R │ │ ├── merge_frames.R │ │ └── run_frames.pbs │ ├── breakwalls │ │ ├── README.md │ │ ├── buffer_height │ │ │ ├── convert_lines_to_lon_lat_maxelev.R │ │ │ ├── make_breakwalls.R │ │ │ └── shapes │ │ │ │ ├── causeway_lake_bridge.cpg │ │ │ │ ├── causeway_lake_bridge.csv │ │ │ │ ├── causeway_lake_bridge.dbf │ │ │ │ ├── causeway_lake_bridge.prj │ │ │ │ ├── causeway_lake_bridge.shp │ │ │ │ ├── causeway_lake_bridge.shx │ │ │ │ ├── port_alma_rd.cpg │ │ │ │ ├── port_alma_rd.csv │ │ │ │ ├── port_alma_rd.dbf │ │ │ │ ├── port_alma_rd.prj │ │ │ │ ├── port_alma_rd.shp │ │ │ │ └── port_alma_rd.shx │ │ ├── fixed_height │ │ │ ├── make_breakwalls.R │ │ │ └── shapes │ │ │ │ ├── fig_tree_creek.cpg │ │ │ │ ├── fig_tree_creek.csv │ │ │ │ ├── fig_tree_creek.dbf │ │ │ │ ├── fig_tree_creek.prj │ │ │ │ ├── fig_tree_creek.shp │ │ │ │ ├── fig_tree_creek.shx │ │ │ │ ├── rosslyn_bay_marina.csv │ │ │ │ ├── rosslyn_bay_marina.dbf │ │ │ │ ├── rosslyn_bay_marina.prj │ │ │ │ ├── rosslyn_bay_marina.shp │ │ │ │ └── rosslyn_bay_marina.shx │ │ ├── make_breakwalls_list.R │ │ ├── swals_breakwall_files.txt │ │ └── test_breakwalls.R │ ├── doc │ │ ├── general_guideance_on_model_setup.md │ │ └── useful_tools.md │ ├── elevation │ │ ├── README.md │ │ ├── make_swals_elevation_files_preference_list.R │ │ ├── makefile │ │ ├── open_estuary_entrances │ │ │ └── estuary_entrance_polygons_values.csv │ │ └── swals_elevation_files_in_preference_order.txt │ ├── friction │ │ ├── README.md │ │ ├── data │ │ │ ├── DEA_Mangroves_friction.csv │ │ │ ├── fuels_clipped_friction.csv │ │ │ └── fuels_clipped_friction_no_mangroves.csv │ │ ├── make_friction_rasters.R │ │ ├── make_friction_rasters_no_mangroves.R │ │ ├── swals_manning_n_files_in_preference_order.txt │ │ └── swals_manning_n_files_in_preference_order_no_mangroves.txt │ ├── gauges │ │ ├── README.md │ │ ├── dart_locations │ │ │ ├── README.md │ │ │ ├── all_DART_nc_files_and_coordinates.csv │ │ │ ├── dart_locations2.dbf │ │ │ ├── dart_locations2.prj │ │ │ ├── dart_locations2.shp │ │ │ └── dart_locations2.shx │ │ ├── gauge_data_coords │ │ │ ├── README.md │ │ │ ├── gauge_coords.csv │ │ │ └── make_gauge_coords.R │ │ ├── gladstone_bay │ │ │ ├── gladstone_coords.csv │ │ │ ├── gladstone_coords.dbf │ │ │ ├── gladstone_coords.prj │ │ │ ├── gladstone_coords.qmd │ │ │ ├── gladstone_coords.shp │ │ │ └── gladstone_coords.shx │ │ ├── hthh_paper_tide_gauges │ │ │ ├── 01_tide_gauge_locations.csv │ │ │ └── README.md │ │ ├── locations.csv │ │ ├── make_gauge_locations.R │ │ ├── nz_dart_locations │ │ │ ├── README.md │ │ │ └── dart_locations.csv │ │ └── qld_gov_locations │ │ │ ├── README.md │ │ │ └── gauge_coords.csv │ ├── initial_stage │ │ ├── README.md │ │ ├── override_initial_stages.csv │ │ ├── shape_to_csv.R │ │ └── shapes │ │ │ ├── Noel_Bowley_way.cpg │ │ │ ├── Noel_Bowley_way.csv │ │ │ ├── Noel_Bowley_way.dbf │ │ │ ├── Noel_Bowley_way.prj │ │ │ ├── Noel_Bowley_way.shp │ │ │ ├── Noel_Bowley_way.shx │ │ │ ├── agnes_waters_airport.cpg │ │ │ ├── agnes_waters_airport.csv │ │ │ ├── agnes_waters_airport.dbf │ │ │ ├── agnes_waters_airport.prj │ │ │ ├── agnes_waters_airport.shp │ │ │ ├── agnes_waters_airport.shx │ │ │ ├── ash_disposal.cpg │ │ │ ├── ash_disposal.csv │ │ │ ├── ash_disposal.dbf │ │ │ ├── ash_disposal.prj │ │ │ ├── ash_disposal.shp │ │ │ ├── ash_disposal.shx │ │ │ ├── baffle_creek_coast_road_2.cpg │ │ │ ├── baffle_creek_coast_road_2.csv │ │ │ ├── baffle_creek_coast_road_2.dbf │ │ │ ├── baffle_creek_coast_road_2.prj │ │ │ ├── baffle_creek_coast_road_2.shp │ │ │ ├── baffle_creek_coast_road_2.shx │ │ │ ├── baffle_creek_coast_road_3.cpg │ │ │ ├── baffle_creek_coast_road_3.csv │ │ │ ├── baffle_creek_coast_road_3.dbf │ │ │ ├── baffle_creek_coast_road_3.prj │ │ │ ├── baffle_creek_coast_road_3.shp │ │ │ ├── baffle_creek_coast_road_3.shx │ │ │ ├── baffle_creek_rocky_point.cpg │ │ │ ├── baffle_creek_rocky_point.csv │ │ │ ├── baffle_creek_rocky_point.dbf │ │ │ ├── baffle_creek_rocky_point.prj │ │ │ ├── baffle_creek_rocky_point.shp │ │ │ ├── baffle_creek_rocky_point.shx │ │ │ ├── barney_point.cpg │ │ │ ├── barney_point.csv │ │ │ ├── barney_point.dbf │ │ │ ├── barney_point.prj │ │ │ ├── barney_point.shp │ │ │ ├── barney_point.shx │ │ │ ├── burnett_heads.cpg │ │ │ ├── burnett_heads.csv │ │ │ ├── burnett_heads.dbf │ │ │ ├── burnett_heads.prj │ │ │ ├── burnett_heads.shp │ │ │ ├── burnett_heads.shx │ │ │ ├── burnett_heads_quarry.cpg │ │ │ ├── burnett_heads_quarry.csv │ │ │ ├── burnett_heads_quarry.dbf │ │ │ ├── burnett_heads_quarry.prj │ │ │ ├── burnett_heads_quarry.shp │ │ │ ├── burnett_heads_quarry.shx │ │ │ ├── by_auckland_inlet.cpg │ │ │ ├── by_auckland_inlet.csv │ │ │ ├── by_auckland_inlet.dbf │ │ │ ├── by_auckland_inlet.prj │ │ │ ├── by_auckland_inlet.shp │ │ │ ├── by_auckland_inlet.shx │ │ │ ├── chapple_st_gladstone.cpg │ │ │ ├── chapple_st_gladstone.csv │ │ │ ├── chapple_st_gladstone.dbf │ │ │ ├── chapple_st_gladstone.prj │ │ │ ├── chapple_st_gladstone.shp │ │ │ ├── chapple_st_gladstone.shx │ │ │ ├── cheetham_salt.cpg │ │ │ ├── cheetham_salt.csv │ │ │ ├── cheetham_salt.dbf │ │ │ ├── cheetham_salt.prj │ │ │ ├── cheetham_salt.shp │ │ │ ├── cheetham_salt.shx │ │ │ ├── colyer_park.cpg │ │ │ ├── colyer_park.csv │ │ │ ├── colyer_park.dbf │ │ │ ├── colyer_park.prj │ │ │ ├── colyer_park.shp │ │ │ ├── colyer_park.shx │ │ │ ├── fishermans_landing.cpg │ │ │ ├── fishermans_landing.csv │ │ │ ├── fishermans_landing.dbf │ │ │ ├── fishermans_landing.prj │ │ │ ├── fishermans_landing.shp │ │ │ ├── fishermans_landing.shx │ │ │ ├── fishermans_landing_2.cpg │ │ │ ├── fishermans_landing_2.csv │ │ │ ├── fishermans_landing_2.dbf │ │ │ ├── fishermans_landing_2.prj │ │ │ ├── fishermans_landing_2.shp │ │ │ ├── fishermans_landing_2.shx │ │ │ ├── gladstone_central.cpg │ │ │ ├── gladstone_central.csv │ │ │ ├── gladstone_central.dbf │ │ │ ├── gladstone_central.prj │ │ │ ├── gladstone_central.shp │ │ │ ├── gladstone_central.shx │ │ │ ├── gladstone_power_station.cpg │ │ │ ├── gladstone_power_station.csv │ │ │ ├── gladstone_power_station.dbf │ │ │ ├── gladstone_power_station.prj │ │ │ ├── gladstone_power_station.shp │ │ │ ├── gladstone_power_station.shx │ │ │ ├── gladstone_station.cpg │ │ │ ├── gladstone_station.csv │ │ │ ├── gladstone_station.dbf │ │ │ ├── gladstone_station.prj │ │ │ ├── gladstone_station.shp │ │ │ ├── gladstone_station.shx │ │ │ ├── kinka_beach.cpg │ │ │ ├── kinka_beach.csv │ │ │ ├── kinka_beach.dbf │ │ │ ├── kinka_beach.prj │ │ │ ├── kinka_beach.shp │ │ │ ├── kinka_beach.shx │ │ │ ├── one_tree_island.cpg │ │ │ ├── one_tree_island.csv │ │ │ ├── one_tree_island.dbf │ │ │ ├── one_tree_island.prj │ │ │ ├── one_tree_island.shp │ │ │ ├── one_tree_island.shx │ │ │ ├── rosslyn_bay.cpg │ │ │ ├── rosslyn_bay.csv │ │ │ ├── rosslyn_bay.dbf │ │ │ ├── rosslyn_bay.prj │ │ │ ├── rosslyn_bay.shp │ │ │ ├── rosslyn_bay.shx │ │ │ ├── seventeen_seventy_marina.cpg │ │ │ ├── seventeen_seventy_marina.csv │ │ │ ├── seventeen_seventy_marina.dbf │ │ │ ├── seventeen_seventy_marina.prj │ │ │ ├── seventeen_seventy_marina.shp │ │ │ ├── seventeen_seventy_marina.shx │ │ │ ├── south_trees_island.cpg │ │ │ ├── south_trees_island.csv │ │ │ ├── south_trees_island.dbf │ │ │ ├── south_trees_island.prj │ │ │ ├── south_trees_island.shp │ │ │ ├── south_trees_island.shx │ │ │ ├── spinaker_park.cpg │ │ │ ├── spinaker_park.csv │ │ │ ├── spinaker_park.dbf │ │ │ ├── spinaker_park.prj │ │ │ ├── spinaker_park.shp │ │ │ ├── spinaker_park.shx │ │ │ ├── taranganba.cpg │ │ │ ├── yarwun.csv │ │ │ ├── yarwun.dbf │ │ │ ├── yarwun.prj │ │ │ ├── yarwun.shp │ │ │ ├── yarwun.shx │ │ │ ├── yeppoon.cpg │ │ │ ├── yeppoon.csv │ │ │ ├── yeppoon.dbf │ │ │ ├── yeppoon.prj │ │ │ ├── yeppoon.shp │ │ │ └── yeppoon.shx │ ├── inverts │ │ ├── README.md │ │ ├── buffer_height_lines │ │ │ ├── apex_park_yeppoon.cpg │ │ │ ├── apex_park_yeppoon.csv │ │ │ ├── apex_park_yeppoon.dbf │ │ │ ├── apex_park_yeppoon.prj │ │ │ ├── apex_park_yeppoon.shp │ │ │ ├── apex_park_yeppoon.shx │ │ │ ├── arthur_st_drain_boyne_island.cpg │ │ │ ├── arthur_st_drain_boyne_island.csv │ │ │ ├── arthur_st_drain_boyne_island.dbf │ │ │ ├── arthur_st_drain_boyne_island.prj │ │ │ ├── arthur_st_drain_boyne_island.shp │ │ │ ├── arthur_st_drain_boyne_island.shx │ │ │ ├── auckland_inlet_drain.cpg │ │ │ ├── auckland_inlet_drain.csv │ │ │ ├── auckland_inlet_drain.dbf │ │ │ ├── auckland_inlet_drain.prj │ │ │ ├── auckland_inlet_drain.shp │ │ │ ├── auckland_inlet_drain.shx │ │ │ ├── barney_point_drain.cpg │ │ │ ├── barney_point_drain.csv │ │ │ ├── barney_point_drain.dbf │ │ │ ├── barney_point_drain.prj │ │ │ ├── barney_point_drain.shp │ │ │ ├── barney_point_drain.shx │ │ │ ├── blue_water_boulevard_causeway_lake.cpg │ │ │ ├── blue_water_boulevard_causeway_lake.csv │ │ │ ├── blue_water_boulevard_causeway_lake.dbf │ │ │ ├── blue_water_boulevard_causeway_lake.prj │ │ │ ├── blue_water_boulevard_causeway_lake.shp │ │ │ ├── blue_water_boulevard_causeway_lake.shx │ │ │ ├── kooyong_park_drain.cpg │ │ │ ├── kooyong_park_drain.csv │ │ │ ├── kooyong_park_drain.dbf │ │ │ ├── kooyong_park_drain.prj │ │ │ ├── kooyong_park_drain.shp │ │ │ ├── kooyong_park_drain.shx │ │ │ ├── lakeview_circuit_causeway_lake.cpg │ │ │ ├── lakeview_circuit_causeway_lake.csv │ │ │ ├── lakeview_circuit_causeway_lake.dbf │ │ │ ├── lakeview_circuit_causeway_lake.prj │ │ │ ├── lakeview_circuit_causeway_lake.shp │ │ │ ├── lakeview_circuit_causeway_lake.shx │ │ │ ├── lammermoor_native_gardens.cpg │ │ │ ├── lammermoor_native_gardens.csv │ │ │ ├── lammermoor_native_gardens.dbf │ │ │ ├── lammermoor_native_gardens.prj │ │ │ ├── lammermoor_native_gardens.shp │ │ │ ├── lammermoor_native_gardens.shx │ │ │ ├── lord_st_drain_gladstone.cpg │ │ │ ├── lord_st_drain_gladstone.csv │ │ │ ├── lord_st_drain_gladstone.dbf │ │ │ ├── lord_st_drain_gladstone.prj │ │ │ ├── lord_st_drain_gladstone.shp │ │ │ ├── lord_st_drain_gladstone.shx │ │ │ ├── park_st_underpass_yeppoon.cpg │ │ │ ├── park_st_underpass_yeppoon.csv │ │ │ ├── park_st_underpass_yeppoon.dbf │ │ │ ├── park_st_underpass_yeppoon.prj │ │ │ ├── park_st_underpass_yeppoon.shp │ │ │ ├── park_st_underpass_yeppoon.shx │ │ │ ├── ross_creek_culvert_1.cpg │ │ │ ├── ross_creek_culvert_1.csv │ │ │ ├── ross_creek_culvert_1.dbf │ │ │ ├── ross_creek_culvert_1.prj │ │ │ ├── ross_creek_culvert_1.shp │ │ │ ├── ross_creek_culvert_1.shx │ │ │ ├── ross_creek_culvert_2.cpg │ │ │ ├── ross_creek_culvert_2.csv │ │ │ ├── ross_creek_culvert_2.dbf │ │ │ ├── ross_creek_culvert_2.prj │ │ │ ├── ross_creek_culvert_2.shp │ │ │ ├── ross_creek_culvert_2.shx │ │ │ ├── ross_creek_culvert_3.cpg │ │ │ ├── ross_creek_culvert_3.csv │ │ │ ├── ross_creek_culvert_3.dbf │ │ │ ├── ross_creek_culvert_3.prj │ │ │ ├── ross_creek_culvert_3.shp │ │ │ ├── ross_creek_culvert_3.shx │ │ │ ├── ross_creek_culvert_4.cpg │ │ │ ├── ross_creek_culvert_4.csv │ │ │ ├── ross_creek_culvert_4.dbf │ │ │ ├── ross_creek_culvert_4.prj │ │ │ ├── ross_creek_culvert_4.shp │ │ │ ├── ross_creek_culvert_4.shx │ │ │ ├── taranganba_drain.cpg │ │ │ ├── taranganba_drain.csv │ │ │ ├── taranganba_drain.dbf │ │ │ ├── taranganba_drain.prj │ │ │ ├── taranganba_drain.shp │ │ │ ├── taranganba_drain.shx │ │ │ ├── willian_miskin_park_ditch.cpg │ │ │ ├── willian_miskin_park_ditch.csv │ │ │ ├── willian_miskin_park_ditch.dbf │ │ │ ├── willian_miskin_park_ditch.prj │ │ │ ├── willian_miskin_park_ditch.shp │ │ │ ├── willian_miskin_park_ditch.shx │ │ │ ├── yeppoon_creek_bridge.cpg │ │ │ ├── yeppoon_creek_bridge.csv │ │ │ ├── yeppoon_creek_bridge.dbf │ │ │ ├── yeppoon_creek_bridge.prj │ │ │ ├── yeppoon_creek_bridge.shp │ │ │ └── yeppoon_creek_bridge.shx │ │ ├── convert_lines_to_lon_lat_maxelev.R │ │ ├── fixed_height_lines │ │ │ ├── briffney_creek.cpg │ │ │ ├── briffney_creek.csv │ │ │ ├── briffney_creek.dbf │ │ │ ├── briffney_creek.prj │ │ │ ├── briffney_creek.shp │ │ │ ├── briffney_creek.shx │ │ │ ├── joe_joseph_dr_bridge.cpg │ │ │ ├── joe_joseph_dr_bridge.csv │ │ │ ├── joe_joseph_dr_bridge.dbf │ │ │ ├── joe_joseph_dr_bridge.prj │ │ │ ├── joe_joseph_dr_bridge.shp │ │ │ ├── joe_joseph_dr_bridge.shx │ │ │ ├── lake_view_circuit_causeway_lake_1.cpg │ │ │ ├── lake_view_circuit_causeway_lake_1.csv │ │ │ ├── lake_view_circuit_causeway_lake_1.dbf │ │ │ ├── lake_view_circuit_causeway_lake_1.prj │ │ │ ├── lake_view_circuit_causeway_lake_1.shp │ │ │ ├── lake_view_circuit_causeway_lake_1.shx │ │ │ ├── shoreline_cl_rosslyn_bay.cpg │ │ │ ├── shoreline_cl_rosslyn_bay.csv │ │ │ ├── shoreline_cl_rosslyn_bay.dbf │ │ │ ├── shoreline_cl_rosslyn_bay.prj │ │ │ ├── shoreline_cl_rosslyn_bay.shp │ │ │ ├── shoreline_cl_rosslyn_bay.shx │ │ │ ├── yeppoon_creek.cpg │ │ │ ├── yeppoon_creek.csv │ │ │ ├── yeppoon_creek.dbf │ │ │ ├── yeppoon_creek.prj │ │ │ ├── yeppoon_creek.shp │ │ │ └── yeppoon_creek.shx │ │ ├── make_inverts.R │ │ ├── swals_invert_files.txt │ │ └── test_inverts.R │ ├── makefile │ ├── modules_R_431.sh │ ├── modules_SWALS_ifx_2024.sh │ ├── multidomain_design │ │ ├── README.md │ │ ├── _aggregate_boxes.R │ │ ├── create_boxes.R │ │ ├── domains_1_3_15_15 │ │ │ ├── load_balance_default.txt │ │ │ ├── nesting_level_1.csv │ │ │ ├── nesting_level_1_domains │ │ │ │ ├── nesting_level_1_domains.dbf │ │ │ │ ├── nesting_level_1_domains.prj │ │ │ │ ├── nesting_level_1_domains.shp │ │ │ │ └── nesting_level_1_domains.shx │ │ │ ├── nesting_level_1_edited.csv │ │ │ ├── nesting_level_2.csv │ │ │ ├── nesting_level_2_domains │ │ │ │ ├── nesting_level_2_domains.dbf │ │ │ │ ├── nesting_level_2_domains.prj │ │ │ │ ├── nesting_level_2_domains.shp │ │ │ │ └── nesting_level_2_domains.shx │ │ │ ├── nesting_level_2_edited.csv │ │ │ ├── nesting_level_3.csv │ │ │ ├── nesting_level_3_domains │ │ │ │ ├── nesting_level_3_domains.dbf │ │ │ │ ├── nesting_level_3_domains.prj │ │ │ │ ├── nesting_level_3_domains.shp │ │ │ │ └── nesting_level_3_domains.shx │ │ │ ├── nesting_level_3_edited.csv │ │ │ ├── nesting_level_4.csv │ │ │ ├── nesting_level_4_domains │ │ │ │ ├── nesting_level_4_domains.dbf │ │ │ │ ├── nesting_level_4_domains.prj │ │ │ │ ├── nesting_level_4_domains.shp │ │ │ │ └── nesting_level_4_domains.shx │ │ │ └── nesting_level_4_edited.csv │ │ ├── edit_boxes.R │ │ ├── first_level_domains_to_coarsen │ │ │ ├── first_level_domains_to_coarsen.cpg │ │ │ ├── first_level_domains_to_coarsen.dbf │ │ │ ├── first_level_domains_to_coarsen.prj │ │ │ ├── first_level_domains_to_coarsen.shp │ │ │ └── first_level_domains_to_coarsen.shx │ │ ├── input │ │ │ ├── nesting_level_1.dbf │ │ │ ├── nesting_level_1.prj │ │ │ ├── nesting_level_1.shp │ │ │ ├── nesting_level_1.shx │ │ │ ├── nesting_level_2.dbf │ │ │ ├── nesting_level_2.prj │ │ │ ├── nesting_level_2.shp │ │ │ ├── nesting_level_2.shx │ │ │ ├── nesting_level_3.dbf │ │ │ ├── nesting_level_3.prj │ │ │ ├── nesting_level_3.shp │ │ │ ├── nesting_level_3.shx │ │ │ ├── nesting_level_4.cpg │ │ │ ├── nesting_level_4.dbf │ │ │ ├── nesting_level_4.prj │ │ │ ├── nesting_level_4.shp │ │ │ └── nesting_level_4.shx │ │ ├── load_balance_partition.txt │ │ ├── ptha18_seconds_before_evolve.R │ │ └── second_level_domains_to_coarsen │ │ │ ├── second_level_domains_to_coarsen.dbf │ │ │ ├── second_level_domains_to_coarsen.prj │ │ │ ├── second_level_domains_to_coarsen.shp │ │ │ └── second_level_domains_to_coarsen.shx │ ├── sources │ │ ├── hazard │ │ │ ├── README.md │ │ │ ├── count_unique_scenarios.sh │ │ │ ├── create_initial_conditions_for_scenarios.R │ │ │ ├── create_scenarios.R │ │ │ ├── importance_sampling_utilities.R │ │ │ ├── ptha_batch │ │ │ │ └── sampling_config.R │ │ │ ├── run_create_scenarios.pbs │ │ │ ├── tide_check_50 │ │ │ │ └── sampling_config.R │ │ │ └── tide_check_50_convergence_test │ │ │ │ └── sampling_config.R │ │ ├── like_historic │ │ │ ├── Chile2010 │ │ │ │ ├── FujiSatake2013 │ │ │ │ │ ├── Chile2010_table1_tsunamiANDgeodetic.csv │ │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ │ └── rupture_summary.csv │ │ │ │ ├── Lorito2011 │ │ │ │ │ ├── LoritoEtAl2011_source_model.csv │ │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ │ ├── rupture_summary.csv │ │ │ │ │ └── s2010MAULEC02LORI.fsp │ │ │ │ └── PTHA18_HS_128450 │ │ │ │ │ └── README.md │ │ │ ├── README.md │ │ │ ├── Tohoku2011 │ │ │ │ └── YamazakiEtAl2018 │ │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ │ └── jgrb52507-sup-0002-Data_S2.txt │ │ │ ├── apply_kajiura_to_rasters.R │ │ │ └── solomon2007 │ │ │ │ ├── README.md │ │ │ │ └── fetch_ptha18_sources.R │ │ └── test │ │ │ ├── README.md │ │ │ ├── create_initial_condition_single.R │ │ │ └── extreme_source_kt43731_times_5 │ │ │ └── make_kt43713_times_5.R │ ├── swals │ │ ├── README.md │ │ ├── makefile │ │ ├── mangroves │ │ │ ├── README.md │ │ │ ├── large_kermadec_mangroves.pbs │ │ │ └── large_kermadec_no_mangroves.pbs │ │ ├── model.f90 │ │ ├── model_initial_conditions_mod.f90 │ │ ├── model_multidomain_design_mod.f90 │ │ ├── movies │ │ │ ├── kermadec_94.pbs │ │ │ └── solomon_90.pbs │ │ ├── multidomain_design_control │ │ │ ├── NNL4_defaultRes.nml │ │ │ ├── NNL4_defaultRes_debug.nml │ │ │ ├── NNL4_defaultRes_movie.nml │ │ │ ├── NNL4_defaultRes_no_mangroves.nml │ │ │ ├── NNL4_defaultRes_singleTide.nml │ │ │ ├── NNL4_defaultres_defaultloadbalance.nml │ │ │ ├── NNL4_lowRes.nml │ │ │ ├── NNL4_lowRes_singleTide.nml │ │ │ ├── README.md │ │ │ └── load_balance_partition.txt │ │ ├── mv_logs.sh │ │ ├── post_process │ │ │ ├── README.md │ │ │ ├── check_log_files.R │ │ │ ├── compress_bz2.pbs │ │ │ ├── create_plots_from_tarred_multidomain_dirs.R │ │ │ ├── create_tarred_rasters_from_tarred_multidomains.R │ │ │ ├── create_tarred_rasters_from_tarred_multidomains.pbs │ │ │ ├── load_balance_script.R │ │ │ ├── make_all_rasters.sh │ │ │ ├── make_domains_shapefile.R │ │ │ ├── make_rasters.R │ │ │ ├── report_domain_runtimes.R │ │ │ └── tar_and_remove_matching_dir.R │ │ ├── run_ptha │ │ │ ├── README.md │ │ │ ├── create_ptha_qsub_jobs.R │ │ │ └── submit_jobs.sh │ │ ├── sea_level_rise │ │ │ ├── README.md │ │ │ ├── large_kermadec_0.0m.pbs │ │ │ └── large_kermadec_0.8m.pbs │ │ ├── set_flags.sh │ │ ├── test-full │ │ │ ├── README.md │ │ │ ├── extreme_source.pbs │ │ │ ├── extreme_source_lowres.pbs │ │ │ ├── plot_convergence.R │ │ │ ├── small_source.pbs │ │ │ ├── tides_varying.pbs │ │ │ └── tides_varying_lowres.pbs │ │ ├── test │ │ │ ├── README.md │ │ │ ├── model_debug.pbs │ │ │ ├── model_load_balanced.pbs │ │ │ ├── model_load_balanced_1cpu.pbs │ │ │ └── model_load_balanced_static.pbs │ │ └── validation │ │ │ ├── README.md │ │ │ ├── _gauges_generic_include.R │ │ │ ├── chile2010.pbs │ │ │ ├── chile2010_Fuji.pbs │ │ │ ├── compute_H95.R │ │ │ ├── compute_gauges_chile_2010.R │ │ │ ├── compute_gauges_solomon_2007.R │ │ │ ├── compute_gauges_tohoku_2011.R │ │ │ ├── max_stage_plots │ │ │ ├── cities.R │ │ │ └── plot_regional_max_stage.R │ │ │ ├── plot_gauges_Chile2010.R │ │ │ ├── plot_gauges_Solomon2007.R │ │ │ ├── plot_gauges_Tohoku2011.R │ │ │ ├── plot_h95_comparison.R │ │ │ ├── solomon2007.pbs │ │ │ ├── solomon2007_lowres.pbs │ │ │ ├── solomon2007_wei2015.pbs │ │ │ ├── tohoku2011.pbs │ │ │ └── tohoku2011_lowres.pbs │ └── tides │ │ ├── README.md │ │ ├── test_adjustment.R │ │ ├── tide_gauge_archives │ │ ├── hat_exceedance.R │ │ ├── locations.in.R │ │ └── read_utils.R │ │ ├── tpxo9_adjusted_for_gauges.R │ │ └── x_y_z.csv ├── hunga_tonga_data_paper │ ├── README.md │ ├── original │ │ ├── 01_tide_gauges │ │ │ └── README.md │ │ ├── 02_mslp_sensors │ │ │ └── README.md │ │ └── README.md │ └── scripts_to_postprocess │ │ ├── README.md │ │ ├── TPXO9_interface │ │ ├── OTPS_directory_name.R │ │ ├── OTPS_directory_name_TPXO9.R │ │ ├── README.md │ │ ├── predict_tide.R │ │ ├── test │ │ │ ├── coffs_data_test.RDS │ │ │ └── test_tides.R │ │ └── tidal_computations.R │ │ ├── compute_gauge_temporal_interval.R │ │ ├── create_README_in_postprocessed_folder.R │ │ ├── create_README_in_postprocessed_graphical_checks_folder.R │ │ ├── detiding.R │ │ ├── get_simple_world_map_data.R │ │ ├── global_variables.R │ │ ├── merge_some_figures.R │ │ ├── parse_gauge_data.R │ │ ├── plot_gauges_near_each_other.R │ │ ├── plot_pressure_gauge_locations_and_write_metadata_to_csv.R │ │ ├── plot_pressure_time_series_and_isolate_short_period_waves.R │ │ ├── plot_tide_gauge_locations_and_write_metadata_to_csv.R │ │ ├── plot_tide_gauge_time_series_and_isolate_short_period_waves.R │ │ ├── plots_for_paper.R │ │ ├── run_all_calculations.sh │ │ ├── spectral_highpass_filter.R │ │ ├── three_panel_plot.R │ │ └── wrld_simpl.RDS ├── monte_carlo_paper_2021 │ ├── README.md │ ├── analysis │ │ └── probabilistic_inundation │ │ │ ├── README.md │ │ │ ├── create_base_elevation_rasters.R │ │ │ ├── create_openstreetmap_land_water_rasters.R │ │ │ ├── depth_vs_exrate_at_gauge.R │ │ │ ├── dominance_of_kermadectonga2_source.R │ │ │ ├── make_depth_epistemic_uncertainty_rasters.R │ │ │ ├── make_depth_epistemic_uncertainty_rasters.sh │ │ │ ├── make_depth_epistemic_uncertainty_rasters_16pc.sh │ │ │ ├── make_depth_epistemic_uncertainty_rasters_msl0.8.sh │ │ │ ├── make_probabilistic_inundation.sh │ │ │ ├── plot_depth_1_in_2475.R │ │ │ ├── plot_depth_vs_exrate_at_parliament.R │ │ │ ├── plot_stage_vs_exrate_at_gauge_3458.R │ │ │ ├── probabilistic_inundation.R │ │ │ ├── raster_plots.R │ │ │ ├── run_make_depth_epistemic_uncertainty_rasters.sh │ │ │ ├── run_make_depth_epistemic_uncertainty_rasters_16pc.sh │ │ │ ├── run_make_depth_epistemic_uncertainty_rasters_msl0.8.sh │ │ │ └── run_make_probabilistic_inundation.sh │ ├── elevation │ │ └── README.md │ ├── gauges │ │ ├── README.md │ │ ├── nukualofa │ │ │ └── README.md │ │ └── point_gauges │ │ │ └── README.md │ ├── optimal_sampling │ │ ├── README.md │ │ ├── plot_optimal_sampling.R │ │ └── synthetic_catalogue_confidence_intervals.R │ ├── regional_setting │ │ ├── README.md │ │ ├── kermadectonga2.dbf │ │ ├── kermadectonga2.prj │ │ ├── kermadectonga2.shp │ │ ├── kermadectonga2.shx │ │ ├── rate_curve_plot_all.R │ │ └── spatial_panel_plot.R │ ├── sources │ │ ├── README.md │ │ ├── like_historic │ │ │ └── README.md │ │ └── random │ │ │ ├── Non_uniform_sampling_effort_compromise_stratifiedImportance.csv │ │ │ ├── README.md │ │ │ ├── R_400_NCI_modules.sh │ │ │ ├── generate_initial_conditions.R │ │ │ ├── get_interactive_job.sh │ │ │ └── select_random_scenarios.R │ └── swals │ │ ├── README.md │ │ ├── SWALS_ifort_modules_2021.sh │ │ ├── create_all_depth_rasters.R │ │ ├── create_random_ptha_qsub_scripts.R │ │ ├── create_random_ptha_qsub_scripts_MSL0.8.R │ │ ├── make_model_ifort │ │ ├── make_rasters.R │ │ ├── model.f90 │ │ ├── model_local_routines.f90 │ │ ├── plot_max_stage_and_elevation.R │ │ ├── plot_validation_runs.R │ │ ├── plots │ │ └── plot_all.R │ │ ├── run_validation_Chile2010.sh │ │ ├── run_validation_Chile2015.sh │ │ ├── run_validation_Tohoku2011_PTHA18_46994.sh │ │ ├── run_validation_Tonga2006.sh │ │ ├── run_validation_Tonga2009.sh │ │ ├── tar_multidomain_dirs.R │ │ └── untar_multidomain_dirs.R ├── nearshore_testing_2020 │ ├── README.md │ ├── analysis_nearshore2020 │ │ ├── README.md │ │ ├── convergence_checks │ │ │ ├── README.md │ │ │ ├── compare_gauges_fujii.R │ │ │ └── compare_gauges_yamakazi.R │ │ ├── gauge_RDS_files │ │ │ └── README.md │ │ ├── linear_friction_and_energy │ │ │ ├── Model_output_52406_linear_with_linear_friction.csv │ │ │ ├── Model_output_52406_linear_with_no_friction.csv │ │ │ ├── energy_tracking.R │ │ │ └── plot_linear_frictionless_and_constant_friction.R │ │ ├── offshore_nonlinear_vs_linear_with_manning │ │ │ ├── README.md │ │ │ └── compare_gauges.R │ │ ├── other_studies │ │ │ ├── AdamsAndLeveque.csv │ │ │ ├── AllenAndGreenslade.csv │ │ │ ├── README.md │ │ │ └── parse_other_study_data.R │ │ ├── time_series_model_types │ │ │ ├── README.md │ │ │ ├── gauge_plots_sites.R │ │ │ └── gauges_plots_sites_all.R │ │ └── tsunami_size │ │ │ ├── README.md │ │ │ ├── analysis.R │ │ │ ├── parse_gauge_outputs.R │ │ │ └── quantile_CI.R │ ├── breakwalls │ │ ├── README.md │ │ ├── convert_lines_to_lon_lat_maxelev.R │ │ ├── make_breakwalls.R │ │ ├── perth │ │ │ ├── hillaries2.csv │ │ │ ├── hillaries2.dbf │ │ │ ├── hillaries2.prj │ │ │ ├── hillaries2.qpj │ │ │ ├── hillaries2.shp │ │ │ ├── hillaries2.shx │ │ │ ├── hillarys1.csv │ │ │ ├── hillarys1.dbf │ │ │ ├── hillarys1.prj │ │ │ ├── hillarys1.qpj │ │ │ ├── hillarys1.shp │ │ │ ├── hillarys1.shx │ │ │ ├── southperth.csv │ │ │ ├── southperth.dbf │ │ │ ├── southperth.prj │ │ │ ├── southperth.qpj │ │ │ ├── southperth.shp │ │ │ ├── southperth.shx │ │ │ ├── southperth2.csv │ │ │ ├── southperth2.dbf │ │ │ ├── southperth2.prj │ │ │ ├── southperth2.qpj │ │ │ ├── southperth2.shp │ │ │ ├── southperth2.shx │ │ │ ├── southperth3.csv │ │ │ ├── southperth3.dbf │ │ │ ├── southperth3.prj │ │ │ ├── southperth3.qpj │ │ │ ├── southperth3.shp │ │ │ ├── southperth3.shx │ │ │ ├── southperth4.csv │ │ │ ├── southperth4.dbf │ │ │ ├── southperth4.prj │ │ │ ├── southperth4.qpj │ │ │ ├── southperth4.shp │ │ │ ├── southperth4.shx │ │ │ ├── southperth5.csv │ │ │ ├── southperth5.dbf │ │ │ ├── southperth5.prj │ │ │ ├── southperth5.qpj │ │ │ ├── southperth5.shp │ │ │ ├── southperth5.shx │ │ │ ├── southperth6.csv │ │ │ ├── southperth6.dbf │ │ │ ├── southperth6.prj │ │ │ ├── southperth6.qpj │ │ │ ├── southperth6.shp │ │ │ ├── southperth6.shx │ │ │ ├── southperth7.csv │ │ │ ├── southperth7.dbf │ │ │ ├── southperth7.prj │ │ │ ├── southperth7.qpj │ │ │ ├── southperth7.shp │ │ │ ├── southperth7.shx │ │ │ ├── swanCanning1.csv │ │ │ ├── swanCanning1.dbf │ │ │ ├── swanCanning1.prj │ │ │ ├── swanCanning1.qpj │ │ │ ├── swanCanning1.shp │ │ │ ├── swanCanning1.shx │ │ │ ├── swanCanning2.csv │ │ │ ├── swanCanning2.dbf │ │ │ ├── swanCanning2.prj │ │ │ ├── swanCanning2.qpj │ │ │ ├── swanCanning2.shp │ │ │ ├── swanCanning2.shx │ │ │ ├── swanCanning3.csv │ │ │ ├── swanCanning3.dbf │ │ │ ├── swanCanning3.prj │ │ │ ├── swanCanning3.qpj │ │ │ ├── swanCanning3.shp │ │ │ ├── swanCanning3.shx │ │ │ ├── swanCanning4.csv │ │ │ ├── swanCanning4.dbf │ │ │ ├── swanCanning4.prj │ │ │ ├── swanCanning4.qpj │ │ │ ├── swanCanning4.shp │ │ │ ├── swanCanning4.shx │ │ │ ├── swanCanning5.csv │ │ │ ├── swanCanning5.dbf │ │ │ ├── swanCanning5.prj │ │ │ ├── swanCanning5.qpj │ │ │ ├── swanCanning5.shp │ │ │ └── swanCanning5.shx │ │ ├── portKembla │ │ │ ├── portKembla.csv │ │ │ ├── portKembla.dbf │ │ │ ├── portKembla.prj │ │ │ ├── portKembla.qpj │ │ │ ├── portKembla.shp │ │ │ ├── portKembla.shx │ │ │ ├── portKembla2.csv │ │ │ ├── portKembla2.dbf │ │ │ ├── portKembla2.prj │ │ │ ├── portKembla2.qpj │ │ │ ├── portKembla2.shp │ │ │ └── portKembla2.shx │ │ ├── portland │ │ │ ├── portland1.csv │ │ │ ├── portland1.dbf │ │ │ ├── portland1.prj │ │ │ ├── portland1.qpj │ │ │ ├── portland1.shp │ │ │ ├── portland1.shx │ │ │ ├── portland2.csv │ │ │ ├── portland2.dbf │ │ │ ├── portland2.prj │ │ │ ├── portland2.qpj │ │ │ ├── portland2.shp │ │ │ └── portland2.shx │ │ └── ulladulla │ │ │ ├── ulladulla.csv │ │ │ ├── ulladulla.dbf │ │ │ ├── ulladulla.prj │ │ │ ├── ulladulla.qpj │ │ │ ├── ulladulla.shp │ │ │ ├── ulladulla.shx │ │ │ ├── ulladulla2.csv │ │ │ ├── ulladulla2.dbf │ │ │ ├── ulladulla2.prj │ │ │ ├── ulladulla2.qpj │ │ │ ├── ulladulla2.shp │ │ │ └── ulladulla2.shx │ ├── elevation │ │ └── README.md │ ├── gauges │ │ ├── README.md │ │ └── gauge_data_links.R │ ├── sources │ │ ├── Chile1960 │ │ │ ├── FujiSatake2013 │ │ │ │ └── Okada_vertical_component.R │ │ │ └── HoEtAl2019 │ │ │ │ ├── jgrb53314-sup-0001-2018jb016996-si.txt │ │ │ │ └── reconstruct_free_surface.R │ │ ├── Chile2010 │ │ │ ├── FujiSatake2013 │ │ │ │ ├── Chile2010_table1_tsunamiANDgeodetic.csv │ │ │ │ └── Okada_vertical_component.R │ │ │ └── LoritoEtAl2011 │ │ │ │ ├── LoritoEtAl2011_source_model.csv │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ ├── parse_fsp.R │ │ │ │ └── s2010MAULEC02LORI.fsp │ │ ├── Chile2015 │ │ │ ├── RomanoEtAl2016 │ │ │ │ ├── FD_input_TRI.inp │ │ │ │ ├── README.txt │ │ │ │ ├── UX.xyz │ │ │ │ ├── UXYZ.xyz │ │ │ │ ├── UY.xyz │ │ │ │ ├── UZ.xyz │ │ │ │ ├── convert_for_TFD.R │ │ │ │ ├── fault_geometry.dat │ │ │ │ └── multiseg_derived_from_fault_geometry.dat │ │ │ └── WilliamsonEtAl2017 │ │ │ │ ├── Okada_vertical_deformation.R │ │ │ │ └── subfaults.csv │ │ ├── README.md │ │ ├── Sumatra2004 │ │ │ ├── FujiSatake2007 │ │ │ │ ├── Fuji_satake_2004_joint_inversion_1ms.txt │ │ │ │ └── Okada_vertical_component.R │ │ │ ├── LoritoEtAl2010 │ │ │ │ └── Okada_vertical_component.R │ │ │ └── PiatanesiLorito2007 │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ └── rupture_parameters.csv │ │ ├── Tohoku2011 │ │ │ ├── RomanoEtAl2015 │ │ │ │ └── README.txt │ │ │ ├── SatakeEtAl2013 │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ └── satake13_data.csv │ │ │ └── YamakaziEtAl2018 │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ └── jgrb52507-sup-0002-Data_S2.txt │ │ ├── apply_kajiura_to_rasters.R │ │ └── figures │ │ │ └── plot_sources.R │ └── swals │ │ ├── README.md │ │ ├── R_361_NCI_modules.sh │ │ ├── SWALS_ifort_modules.sh │ │ ├── compare_runtimes_nonlinearOffshore_LinearPlusManningOffshore.R │ │ ├── config.R │ │ ├── copy_gauges_to_analysis_directory.R │ │ ├── create_job_commands.R │ │ ├── domain_plot.R │ │ ├── get_deletion_times.R │ │ ├── image_plot.R │ │ ├── load_balance_files │ │ ├── load_balance_default_NSW_30nodes_120mpi.txt │ │ ├── load_balance_default_NSW_8nodes_32mpi.txt │ │ ├── load_balance_default_australia_30nodes_120mpi.txt │ │ ├── load_balance_default_australia_8nodes_32mpi.txt │ │ ├── load_balance_leapfrognonlinear_offshore_NSW_8nodes_32ranks.txt │ │ ├── load_balance_leapfrognonlinear_offshore_NSW_8nodes_32ranks_REVISED.txt │ │ ├── load_balance_linear_offshore_NSW_8nodes_32ranks.txt │ │ ├── load_balance_linear_offshore_australia_8nodes_32ranks.txt │ │ ├── load_balance_manning_offshore_NSW_30nodes_120ranks.txt │ │ ├── load_balance_manning_offshore_NSW_8nodes_32ranks.txt │ │ ├── load_balance_manning_offshore_australia_30nodes_120ranks.txt │ │ ├── load_balance_manning_offshore_australia_8nodes_32ranks.txt │ │ └── make_120mpi.R │ │ ├── make_model_ifort │ │ ├── make_rasters.R │ │ ├── model.f90 │ │ ├── model_local_routines.f90 │ │ ├── plot_max_stage_and_elevation.R │ │ ├── plots │ │ ├── README.md │ │ ├── plot_all.R │ │ ├── plot_gauges_generic_include.R │ │ ├── plot_southamerica1960.R │ │ ├── plot_southamerica2010.R │ │ ├── plot_southamerica2015.R │ │ ├── plot_sumatra2004.R │ │ └── plot_tohoku2011.R │ │ ├── point_gauges_combined.csv │ │ ├── run_inversions_Fujii07_HIGHRES_30nodes.sh │ │ ├── run_inversions_full_linear_with_delayed_linear_friction_8nodes.sh │ │ ├── run_inversions_full_linear_with_linear_friction_8nodes.sh │ │ ├── run_inversions_full_linear_with_manning_8nodes.sh │ │ ├── run_inversions_full_linear_with_manning_Chile1960_WA_too.sh │ │ ├── run_inversions_full_linear_with_no_friction_8nodes.sh │ │ ├── run_inversions_full_linear_with_reduced_linear_friction_8nodes.sh │ │ ├── run_inversions_tohoku2011_2nodes_offshoreOnly_rise_time_sensitivity.sh │ │ ├── run_inversions_tohoku2011_4nodes_offshoreOnly_HIGHER_RES.sh │ │ ├── run_inversions_tohoku2011_8nodes_TEST_RUNS_FOR_LOAD_BALANCING.sh │ │ ├── run_inversions_with_DART_obs_linear_only_4nodes.sh │ │ ├── run_inversions_with_DART_obs_linear_with_manning_4nodes.sh │ │ ├── run_yamakazi_HIGHRES_30nodes.sh │ │ └── run_yamakazi_leapfrognonlinearoffshore_8nodes.sh ├── nearshore_testing_ptha_2025 │ ├── README.md │ ├── analysis_ptha18_scenarios_2025 │ │ ├── README.md │ │ ├── make_directory_structure.sh │ │ └── tsunami_size │ │ │ ├── README.md │ │ │ ├── analysis_data_and_functions.R │ │ │ ├── analysis_good_scenarios_plot.R │ │ │ ├── boxplot_stats_and_scatterplots.R │ │ │ ├── create_times_to_start_tide_gauge_comparison_with_models.R │ │ │ ├── downsample_and_smooth_model_at_nearshore_tide_gauge.R │ │ │ ├── gauge_truncation_info.R │ │ │ ├── get_coordinates_of_good_gauges.R │ │ │ ├── good_nearshore_data_definition.R │ │ │ ├── is_gauge_in_highres_domain.R │ │ │ ├── manually_despike_data.R │ │ │ ├── parse_gauge_outputs.R │ │ │ ├── plot_best_scenarios_large_and_small_waves.R │ │ │ ├── run_stats_under_null_hypothesis.R │ │ │ ├── stats_under_null_hypothesis.R │ │ │ ├── stats_with_random_site_per_event.R │ │ │ ├── sum_walltime_all_tsunami_models.R │ │ │ ├── summary_statistics_median_GOF_over_gauges.R │ │ │ ├── time_domain_hybrid_norm.R │ │ │ └── times_to_start_comparison_with_tide_gauge.RDS │ ├── breakwalls │ │ ├── README.md │ │ ├── convert_lines_to_lon_lat_maxelev.R │ │ ├── dampier_causeway │ │ │ ├── causeway_geo │ │ │ │ ├── causeway_geo.dbf │ │ │ │ ├── causeway_geo.prj │ │ │ │ ├── causeway_geo.shp │ │ │ │ └── causeway_geo.shx │ │ │ ├── create_breakwall_dampiercauseway.R │ │ │ └── dampier_causeway_breakwall_estimate.csv │ │ ├── exmouth_entrance_estimate │ │ │ ├── breakwall_location │ │ │ │ ├── exmouth_entrance_estimate.dbf │ │ │ │ ├── exmouth_entrance_estimate.prj │ │ │ │ ├── exmouth_entrance_estimate.shp │ │ │ │ └── exmouth_entrance_estimate.shx │ │ │ ├── create_breakwall_exmouth.R │ │ │ └── exmouth_entrance_breakwall_estimate.csv │ │ ├── make_breakwalls.R │ │ ├── onslow_creek_entrance_estimate │ │ │ ├── create_breakwall_onslowcreek.R │ │ │ ├── creek_entrance_geo │ │ │ │ ├── creek_entrance_geo.dbf │ │ │ │ ├── creek_entrance_geo.prj │ │ │ │ ├── creek_entrance_geo.shp │ │ │ │ └── creek_entrance_geo.shx │ │ │ └── onslow_creek_entrance_breakwall_estimate.csv │ │ ├── perth │ │ │ ├── hillaries2.csv │ │ │ ├── hillaries2.dbf │ │ │ ├── hillaries2.prj │ │ │ ├── hillaries2.qpj │ │ │ ├── hillaries2.shp │ │ │ ├── hillaries2.shx │ │ │ ├── hillarys1.csv │ │ │ ├── hillarys1.dbf │ │ │ ├── hillarys1.prj │ │ │ ├── hillarys1.qpj │ │ │ ├── hillarys1.shp │ │ │ ├── hillarys1.shx │ │ │ ├── southperth.csv │ │ │ ├── southperth.dbf │ │ │ ├── southperth.prj │ │ │ ├── southperth.qpj │ │ │ ├── southperth.shp │ │ │ ├── southperth.shx │ │ │ ├── southperth2.csv │ │ │ ├── southperth2.dbf │ │ │ ├── southperth2.prj │ │ │ ├── southperth2.qpj │ │ │ ├── southperth2.shp │ │ │ ├── southperth2.shx │ │ │ ├── southperth3.csv │ │ │ ├── southperth3.dbf │ │ │ ├── southperth3.prj │ │ │ ├── southperth3.qpj │ │ │ ├── southperth3.shp │ │ │ ├── southperth3.shx │ │ │ ├── southperth4.csv │ │ │ ├── southperth4.dbf │ │ │ ├── southperth4.prj │ │ │ ├── southperth4.qpj │ │ │ ├── southperth4.shp │ │ │ ├── southperth4.shx │ │ │ ├── southperth5.csv │ │ │ ├── southperth5.dbf │ │ │ ├── southperth5.prj │ │ │ ├── southperth5.qpj │ │ │ ├── southperth5.shp │ │ │ ├── southperth5.shx │ │ │ ├── southperth6.csv │ │ │ ├── southperth6.dbf │ │ │ ├── southperth6.prj │ │ │ ├── southperth6.qpj │ │ │ ├── southperth6.shp │ │ │ ├── southperth6.shx │ │ │ ├── southperth7.csv │ │ │ ├── southperth7.dbf │ │ │ ├── southperth7.prj │ │ │ ├── southperth7.qpj │ │ │ ├── southperth7.shp │ │ │ ├── southperth7.shx │ │ │ ├── swanCanning1.csv │ │ │ ├── swanCanning1.dbf │ │ │ ├── swanCanning1.prj │ │ │ ├── swanCanning1.qpj │ │ │ ├── swanCanning1.shp │ │ │ ├── swanCanning1.shx │ │ │ ├── swanCanning2.csv │ │ │ ├── swanCanning2.dbf │ │ │ ├── swanCanning2.prj │ │ │ ├── swanCanning2.qpj │ │ │ ├── swanCanning2.shp │ │ │ ├── swanCanning2.shx │ │ │ ├── swanCanning3.csv │ │ │ ├── swanCanning3.dbf │ │ │ ├── swanCanning3.prj │ │ │ ├── swanCanning3.qpj │ │ │ ├── swanCanning3.shp │ │ │ ├── swanCanning3.shx │ │ │ ├── swanCanning4.csv │ │ │ ├── swanCanning4.dbf │ │ │ ├── swanCanning4.prj │ │ │ ├── swanCanning4.qpj │ │ │ ├── swanCanning4.shp │ │ │ ├── swanCanning4.shx │ │ │ ├── swanCanning5.csv │ │ │ ├── swanCanning5.dbf │ │ │ ├── swanCanning5.prj │ │ │ ├── swanCanning5.qpj │ │ │ ├── swanCanning5.shp │ │ │ └── swanCanning5.shx │ │ ├── portKembla │ │ │ ├── portKembla.csv │ │ │ ├── portKembla.dbf │ │ │ ├── portKembla.prj │ │ │ ├── portKembla.qpj │ │ │ ├── portKembla.shp │ │ │ ├── portKembla.shx │ │ │ ├── portKembla2.csv │ │ │ ├── portKembla2.dbf │ │ │ ├── portKembla2.prj │ │ │ ├── portKembla2.qpj │ │ │ ├── portKembla2.shp │ │ │ └── portKembla2.shx │ │ ├── portgeographe_entrance │ │ │ ├── README.txt │ │ │ └── portgeographe_entrance.csv │ │ ├── portland │ │ │ ├── portland1.csv │ │ │ ├── portland1.dbf │ │ │ ├── portland1.prj │ │ │ ├── portland1.qpj │ │ │ ├── portland1.shp │ │ │ ├── portland1.shx │ │ │ ├── portland2.csv │ │ │ ├── portland2.dbf │ │ │ ├── portland2.prj │ │ │ ├── portland2.qpj │ │ │ ├── portland2.shp │ │ │ └── portland2.shx │ │ └── ulladulla │ │ │ ├── ulladulla.csv │ │ │ ├── ulladulla.dbf │ │ │ ├── ulladulla.prj │ │ │ ├── ulladulla.qpj │ │ │ ├── ulladulla.shp │ │ │ ├── ulladulla.shx │ │ │ ├── ulladulla2.csv │ │ │ ├── ulladulla2.dbf │ │ │ ├── ulladulla2.prj │ │ │ ├── ulladulla2.qpj │ │ │ ├── ulladulla2.shp │ │ │ └── ulladulla2.shx │ ├── elevation │ │ └── README.txt │ ├── gauges │ │ ├── README.md │ │ ├── gauge_coords.csv │ │ └── gauge_data_links.R │ ├── ptha18_scenarios_random │ │ ├── README.md │ │ ├── check_runs_completed.R │ │ ├── data_for_plots.R │ │ ├── get_alongstrike_range_for_plotting.R │ │ ├── get_parameters_for_events.R │ │ ├── get_summary_stats_random_scenarios.R │ │ ├── get_target_scenario_focal_mechanism.R │ │ ├── plot_events.R │ │ ├── plot_random_scenarios_for_paper.R │ │ ├── set_range_of_mw_and_centroid │ │ │ ├── README.md │ │ │ ├── compare_with_data_environment.R │ │ │ └── find_scenarios_near_historic_events.R │ │ ├── set_range_of_mw_and_centroid_batch2 │ │ │ ├── README.md │ │ │ ├── compare_with_data_environment.R │ │ │ └── find_scenarios_near_historic_events.R │ │ ├── set_range_of_mw_and_centroid_batch3 │ │ │ ├── README.md │ │ │ ├── compare_with_data_environment.R │ │ │ └── find_scenarios_near_historic_events.R │ │ ├── set_range_of_mw_and_centroid_batch4 │ │ │ ├── README.md │ │ │ ├── compare_with_data_environment.R │ │ │ └── find_scenarios_near_historic_events.R │ │ ├── set_range_of_mw_and_centroid_batch5 │ │ │ ├── README.md │ │ │ ├── compare_with_data_environment.R │ │ │ └── find_scenarios_near_historic_events.R │ │ └── set_range_of_mw_and_centroid_batch6 │ │ │ ├── README.md │ │ │ ├── compare_with_data_environment.R │ │ │ └── find_scenarios_near_historic_events.R │ ├── sources │ │ ├── Chile1960 │ │ │ └── HoEtAl2019 │ │ │ │ ├── Ho_Chile1960_initial_displacement.tif.aux.xml │ │ │ │ ├── jgrb53314-sup-0001-2018jb016996-si.txt │ │ │ │ └── reconstruct_free_surface.R │ │ ├── Chile2010 │ │ │ └── LoritoEtAl2011 │ │ │ │ ├── LoritoEtAl2011_source_model.csv │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ ├── parse_fsp.R │ │ │ │ ├── rupture_summary.csv │ │ │ │ ├── s2010MAULEC02LORI.fsp │ │ │ │ ├── s2010MAULEC02LORI.mat │ │ │ │ └── s2010MAULEC02LORI.slp │ │ ├── Chile2014 │ │ │ └── An_2014 │ │ │ │ ├── An_inversion_data.txt │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ └── rupture_summary.csv │ │ ├── Chile2015 │ │ │ └── WilliamsonEtAl2017 │ │ │ │ ├── Okada_vertical_deformation.R │ │ │ │ ├── rupture_summary.csv │ │ │ │ └── subfaults.csv │ │ ├── KermadecTonga2021 │ │ │ └── Romano2021 │ │ │ │ ├── Kermadec2021_Romano.tif │ │ │ │ └── README.txt │ │ ├── NewHebrides2021 │ │ │ └── GusmanEtAl │ │ │ │ ├── Okada_vertical_deformation.R │ │ │ │ ├── rupture_summary.csv │ │ │ │ └── source_inversion_GusmanEtAl.txt │ │ ├── Puysegur2009 │ │ │ └── Bevan2010 │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ ├── gji_4789_TableS7_CP3.txt │ │ │ │ └── rupture_summary.csv │ │ ├── README.md │ │ ├── Sandwich2021 │ │ │ └── Roger2024_GCMT_source │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ └── rupture_summary.csv │ │ ├── Solomon2007 │ │ │ └── Wei_2015 │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ ├── Wei_S2_data.txt │ │ │ │ └── rupture_summary.csv │ │ ├── Source_information.csv │ │ ├── Sumatra2007 │ │ │ └── FujiiSatake2007 │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ └── rupture_summary.csv │ │ ├── Tohoku2011 │ │ │ └── YamazakiEtAl2018Fixed │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ ├── jgrb52507-sup-0002-Data_S2.txt │ │ │ │ └── rupture_summary.csv │ │ ├── apply_kajiura_to_rasters.R │ │ ├── sources_with_rise_time │ │ │ ├── Java2006 │ │ │ │ └── FujiiSatake06 │ │ │ │ │ ├── FujiSatake2006_Java2006_time_varying_forcing_instantaneous.csv │ │ │ │ │ ├── FujiSatake2006_Java2006_time_varying_forcing_realistic.csv │ │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ │ ├── make_initial_conditions_complex_historical_events.R │ │ │ │ │ └── rupture_summary.csv │ │ │ ├── Sumatra2004 │ │ │ │ └── FujiSatake2007 │ │ │ │ │ ├── FujiSatake2007_time_varying_forcing_instantaneous.csv │ │ │ │ │ ├── FujiSatake2007_time_varying_forcing_realistic.csv │ │ │ │ │ ├── Fuji_satake_2004_joint_inversion_1ms.txt │ │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ │ ├── make_initial_conditions_complex_historical_events.R │ │ │ │ │ └── rupture_summary.csv │ │ │ └── apply_kajiura_to_rasters.R │ │ └── sumatra2005 │ │ │ ├── Okada_exercise_solution.R │ │ │ └── rupture_summary.csv │ └── swals │ │ ├── README.md │ │ ├── SWALS_ifort_modules.sh │ │ ├── SWALS_ifort_modules_2021.sh │ │ ├── SWALS_ifort_modules_2022.sh │ │ ├── SWALS_ifort_modules_2023.sh │ │ ├── copy_model_outputs_to_mdss.sh │ │ ├── create_random_ptha_batch2_qsub_scripts.R │ │ ├── create_random_ptha_batch3_qsub_scripts.R │ │ ├── create_random_ptha_batch4_qsub_scripts.R │ │ ├── create_random_ptha_batch5_qsub_scripts.R │ │ ├── create_random_ptha_batch6_qsub_scripts.R │ │ ├── create_random_ptha_qsub_scripts.R │ │ ├── create_random_ptha_qsub_scripts_largerWAmodels.R │ │ ├── domain_shapefiles_by_highres_regions │ │ ├── highres_NSW │ │ │ └── domains_shapefile │ │ │ │ ├── domains_shapefile.dbf │ │ │ │ ├── domains_shapefile.prj │ │ │ │ ├── domains_shapefile.shp │ │ │ │ └── domains_shapefile.shx │ │ ├── highres_NWWA │ │ │ └── domains_shapefile │ │ │ │ ├── domains_shapefile.dbf │ │ │ │ ├── domains_shapefile.prj │ │ │ │ ├── domains_shapefile.shp │ │ │ │ └── domains_shapefile.shx │ │ ├── highres_WA │ │ │ └── domains_shapefile │ │ │ │ ├── domains_shapefile.dbf │ │ │ │ ├── domains_shapefile.prj │ │ │ │ ├── domains_shapefile.shp │ │ │ │ └── domains_shapefile.shx │ │ ├── highres_australiaWA │ │ │ └── domains_shapefile │ │ │ │ ├── domains_shapefile.dbf │ │ │ │ ├── domains_shapefile.prj │ │ │ │ ├── domains_shapefile.shp │ │ │ │ └── domains_shapefile.shx │ │ └── highres_perth │ │ │ └── domains_shapefile │ │ │ ├── domains_shapefile.dbf │ │ │ ├── domains_shapefile.prj │ │ │ ├── domains_shapefile.shp │ │ │ └── domains_shapefile.shx │ │ ├── extract_key_outputs_from_tarred_multidomain_3.R │ │ ├── load_balance_files │ │ ├── README.md │ │ ├── load_balance_australiaWA_8nodes_32mpi.txt │ │ ├── load_balance_default_NSW_8nodes_32mpi.txt │ │ ├── load_balance_default_australiaWA_8nodes_32mpi.txt │ │ ├── load_balance_default_nwwa_8nodes_32mpi.txt │ │ ├── load_balance_default_perth_8nodes_32mpi.txt │ │ ├── load_balance_default_wa_8nodes_32MPI.txt │ │ ├── load_balance_manning_offshore_NSW_8nodes_32ranks.txt │ │ ├── load_balance_manning_offshore_NSW_8nodes_32ranks_2022.txt │ │ ├── load_balance_manning_offshore_australia_8nodes_32ranks.txt │ │ ├── load_balance_manning_offshore_perth_8nodes_32ranks_2022.txt │ │ └── load_balance_nwwa_8nodes_32mpi.txt │ │ ├── load_balance_script.R │ │ ├── make_domains_shapefile.R │ │ ├── make_model_ifort │ │ ├── model.f90 │ │ ├── model_local_routines.f90 │ │ ├── plots │ │ ├── README.md │ │ ├── plot_gauges_generic_include.R │ │ ├── plot_java2006.R │ │ ├── plot_kermadectonga2021.R │ │ ├── plot_newhebrides2021.R │ │ ├── plot_puysegur2009.R │ │ ├── plot_sandwich2021.R │ │ ├── plot_solomon2007.R │ │ ├── plot_southamerica1960.R │ │ ├── plot_southamerica2010.R │ │ ├── plot_southamerica2014.R │ │ ├── plot_southamerica2015.R │ │ ├── plot_sumatra2004.R │ │ ├── plot_sumatra2005.R │ │ ├── plot_sumatra2007.R │ │ └── plot_tohoku2011.R │ │ ├── point_gauges_combined.csv │ │ ├── point_gauges_combined_NWWA.csv │ │ ├── point_gauges_combined_SWWA.csv │ │ ├── report_domain_runtimes.R │ │ ├── run_extract_key_outputs_from_tarred_multidomain_3.sh │ │ ├── run_inversions_for_each_event.sh │ │ ├── run_tar_dir.sh │ │ └── tar_multidomain_dirs.R ├── nsw_2023_2024 │ ├── GENERAL_GUIDANCE_ON_MODEL_SETUP.md │ ├── README.md │ ├── USEFUL_TOOLS.md │ ├── analysis_multiple_importance_sampling │ │ ├── README.md │ │ ├── extra_plots │ │ │ ├── arrival_times │ │ │ │ ├── README.md │ │ │ │ ├── cities.R │ │ │ │ ├── osm_backdrop.R │ │ │ │ ├── plot_arrival_times.R │ │ │ │ └── plot_offshore_vs_onshore_arrival_times.R │ │ │ └── tsunami_intensity_and_exceedance_rates │ │ │ │ ├── README.md │ │ │ │ ├── minnamurra_line_Switzer │ │ │ │ ├── Minnamurra_line_switzer.dbf │ │ │ │ ├── Minnamurra_line_switzer.prj │ │ │ │ ├── Minnamurra_line_switzer.shp │ │ │ │ └── Minnamurra_line_switzer.shx │ │ │ │ ├── osm_maps.R │ │ │ │ └── plot_zoom_regions │ │ │ │ ├── plot_zoom_regions.dbf │ │ │ │ ├── plot_zoom_regions.prj │ │ │ │ ├── plot_zoom_regions.shp │ │ │ │ └── plot_zoom_regions.shx │ │ ├── jatwc_to_inundation │ │ │ ├── README.md │ │ │ ├── R_431_NCI_modules.sh │ │ │ ├── application_specific_metadata.R │ │ │ ├── compute_max_depths_for_marine_warning_scenarios.R │ │ │ ├── compute_scenario_statistics_in_zone.R │ │ │ ├── convert_raster_zones_to_polygons_with_PTHA_limits.R │ │ │ ├── get_JATWC_statistics_for_a_scenario.R │ │ │ ├── make_vrt.R │ │ │ ├── map_threat_levels_in_zone.R │ │ │ ├── plot_distribution_of_H_statistics.R │ │ │ └── run_all_zones.sh │ │ ├── jatwc_to_inundation_zones_edited │ │ │ ├── README.md │ │ │ └── edit_jatwc_zones_based_1in2500_tsunami_size.R │ │ ├── make_data_package.R │ │ ├── max_stage_at_a_point │ │ │ ├── README.md │ │ │ ├── extract_max_stage_at_a_point.R │ │ │ ├── extract_max_stage_utilities.R │ │ │ └── run_a_few.sh │ │ ├── probabilistic_inundation │ │ │ ├── README.md │ │ │ ├── R_431_NCI_modules.sh │ │ │ ├── application_specific_file_metadata.R │ │ │ ├── check_rasters.R │ │ │ ├── compute_arrival_time_minima_and_scenario_average.R │ │ │ ├── compute_exceedance_rates_at_epistemic_uncertainty_percentile.R │ │ │ ├── compute_flood_hazard_categories.R │ │ │ ├── compute_mean_exrate_upper_CI.R │ │ │ ├── compute_mean_rate_from_previous_calculations.R │ │ │ ├── compute_sum_of_percentiles.R │ │ │ ├── compute_threshold_at_exceedance_rate_of_epistemic_uncertainty_percentile.R │ │ │ ├── epistemic_uncertainty_functions.R │ │ │ ├── flood_hazard_categories_FB03.R │ │ │ ├── make_depth_above_initial_condition.R │ │ │ ├── make_directory_structure.sh │ │ │ ├── make_exceedance_rate_jobs.R │ │ │ ├── make_threshold_epistemic_uncertainty_jobs.R │ │ │ ├── mask_depths_below_MSL.R │ │ │ ├── run_compute_arrival_time_minima_and_scenario_average.sh │ │ │ ├── run_compute_exceedance_rates_at_epistemic_uncertainty_VARIABLE_SOURCEZONE_PERCENTILE_LOWER_UPPER_EXCEEDANCETHRESHOLD.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_DEPTH___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_FLUX___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_SPEED___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_STAGE___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_median_1in250_DEPTH___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_median_1in250_MAX_FLUX___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_median_1in250_MAX_SPEED___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_median_1in250_MAX_STAGE___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ ├── test_compute_exceedance_rates_at_epistemic_uncertainty.R │ │ │ ├── test_compute_threshold_at_exceedance_rate_of_epistemic_uncertainty.R │ │ │ └── tidy_lower_bounds_in_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile.R │ │ └── template_data_package │ │ │ ├── JATWC_inundation_zones │ │ │ ├── README.md │ │ │ └── make_pdf.sh │ │ │ ├── Probabilistic_inundation_hazard │ │ │ ├── README.md │ │ │ └── make_pdf.sh │ │ │ ├── README.md │ │ │ └── make_pdf.sh │ ├── analysis_scenarios_ID1315.5 │ │ ├── check_log_files │ │ │ ├── README.md │ │ │ └── check_log_files.R │ │ ├── max_stage_at_a_point │ │ │ ├── README.md │ │ │ ├── extract_max_stage_at_a_point.R │ │ │ ├── extract_max_stage_utilities.R │ │ │ └── run_a_few.sh │ │ └── probabilistic_inundation │ │ │ ├── README.md │ │ │ ├── R_431_NCI_modules.sh │ │ │ ├── TEMPLATE_run_compute_exceedance_rates_at_epistemic_uncertainty_VARIABLE_SOURCEZONE_PERCENTILE_LOWER_UPPER_EXCEEDANCETHRESHOLD.sh │ │ │ ├── application_specific_file_metadata.R │ │ │ ├── check_rasters.R │ │ │ ├── compute_binned_thresholds_matching_exrate_from_set_of_exrate_rasters.R │ │ │ ├── compute_exceedance_rates_at_epistemic_uncertainty_percentile.R │ │ │ ├── compute_exceedance_rates_at_logic_tree_mean.R │ │ │ ├── compute_highres_domain_depth_above_initial_condition_at_epistemic_uncertainty_84pc.R │ │ │ ├── compute_mean_exrate_upper_CI.R │ │ │ ├── compute_sum_of_percentiles.R │ │ │ ├── compute_threshold_at_exceedance_rate_of_epistemic_uncertainty_percentile.R │ │ │ ├── convert_folder_to_zip.R │ │ │ ├── epistemic_uncertainty_functions.R │ │ │ ├── estimate_highres_domain_max_stage_at_epistemic_uncertainty_84pc.R │ │ │ ├── exceedance_rate_raster_calculations.R │ │ │ ├── make_directory_structure.sh │ │ │ ├── make_exceedance_rate_jobs.R │ │ │ ├── make_threshold_epistemic_uncertainty_jobs.R │ │ │ ├── mask_depths_below_MSL.R │ │ │ ├── mask_max_stage_in_dry_areas.R │ │ │ ├── run_compute_exceedance_rates_at_epistemic_uncertainty_VARIABLE_SOURCEZONE_PERCENTILE_LOWER_UPPER_EXCEEDANCETHRESHOLD.sh │ │ │ ├── run_compute_exceedance_rates_for_threshold_depth_logic_tree_mean.sh │ │ │ ├── run_compute_exceedance_rates_for_threshold_max_stages_logic_tree_mean.sh │ │ │ ├── run_compute_exceedance_rates_for_threshold_max_stages_logic_tree_mean_sapphirerapids.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_STAGE___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ ├── test_compute_exceedance_rates_at_epistemic_uncertainty.R │ │ │ ├── test_compute_threshold_at_exceedance_rate_of_epistemic_uncertainty.R │ │ │ └── test_exceedance_rate_raster_calculations.R │ ├── analysis_scenarios_ID4186.3 │ │ ├── check_log_files │ │ │ ├── README.md │ │ │ └── check_log_files.R │ │ ├── max_stage_at_a_point │ │ │ ├── README.md │ │ │ ├── extract_max_stage_at_a_point.R │ │ │ ├── extract_max_stage_utilities.R │ │ │ └── run_a_few.sh │ │ └── probabilistic_inundation │ │ │ ├── README.md │ │ │ ├── R_431_NCI_modules.sh │ │ │ ├── application_specific_file_metadata.R │ │ │ ├── check_rasters.R │ │ │ ├── compute_exceedance_rates_at_epistemic_uncertainty_percentile.R │ │ │ ├── compute_exceedance_rates_at_logic_tree_mean.R │ │ │ ├── compute_mean_exrate_upper_CI.R │ │ │ ├── compute_sum_of_percentiles.R │ │ │ ├── epistemic_uncertainty_functions.R │ │ │ ├── exceedance_rate_raster_calculations.R │ │ │ ├── make_directory_structure.sh │ │ │ ├── make_exceedance_rate_jobs.R │ │ │ ├── run_compute_exceedance_rates_at_epistemic_uncertainty_VARIABLE_SOURCEZONE_PERCENTILE_LOWER_UPPER_EXCEEDANCETHRESHOLD.sh │ │ │ ├── run_compute_exceedance_rates_for_threshold_depth_logic_tree_mean.sh │ │ │ ├── test_compute_exceedance_rates_at_epistemic_uncertainty.R │ │ │ └── test_exceedance_rate_raster_calculations.R │ ├── analysis_scenarios_ID710.5 │ │ ├── README.md │ │ ├── check_log_files │ │ │ ├── README.md │ │ │ └── check_log_files.R │ │ ├── jatwc_to_inundation │ │ │ ├── README.md │ │ │ ├── R_431_NCI_modules.sh │ │ │ ├── application_specific_metadata.R │ │ │ ├── compute_max_depths_for_marine_warning_scenarios.R │ │ │ ├── compute_scenario_statistics_in_zone.R │ │ │ ├── convert_raster_zones_to_polygons_with_PTHA_limits.R │ │ │ ├── copy_elevation_rasters_locally.R │ │ │ ├── make_elevation_contours.R │ │ │ ├── make_vrt.R │ │ │ ├── map_threat_levels_in_zone.R │ │ │ ├── plot_distribution_of_H_statistics.R │ │ │ └── run_all_zones.sh │ │ ├── make_data_package.R │ │ ├── max_stage_at_a_point │ │ │ ├── README.md │ │ │ ├── extract_max_stage_at_a_point.R │ │ │ └── extract_max_stage_utilities.R │ │ ├── probabilistic_inundation │ │ │ ├── README.md │ │ │ ├── R_431_NCI_modules.sh │ │ │ ├── application_specific_file_metadata.R │ │ │ ├── compute_binned_thresholds_matching_exrate_from_set_of_exrate_rasters.R │ │ │ ├── compute_exceedance_rates_at_epistemic_uncertainty_percentile.R │ │ │ ├── compute_exceedance_rates_at_logic_tree_mean.R │ │ │ ├── compute_highres_domain_depth_above_initial_condition_at_epistemic_uncertainty_84pc.R │ │ │ ├── compute_mean_exrate_upper_CI.R │ │ │ ├── compute_sum_of_percentiles.R │ │ │ ├── compute_threshold_at_exceedance_rate_of_epistemic_uncertainty_percentile.R │ │ │ ├── compute_threshold_at_exceedance_rate_of_epistemic_uncertainty_percentile_adaptive.R │ │ │ ├── epistemic_uncertainty_functions.R │ │ │ ├── epistemic_uncertainty_functions_adaptive.R │ │ │ ├── estimate_highres_domain_max_stage_at_epistemic_uncertainty_84pc.R │ │ │ ├── exceedance_rate_raster_calculations.R │ │ │ ├── make_directory_structure.sh │ │ │ ├── make_exceedance_rate_jobs.R │ │ │ ├── make_threshold_epistemic_uncertainty_jobs.R │ │ │ ├── mask_depths_below_MSL.R │ │ │ ├── mask_max_stage_in_dry_areas.R │ │ │ ├── run_compute_exceedance_rates_at_epistemic_uncertainty_VARIABLE_SOURCEZONE_PERCENTILE_LOWER_UPPER_EXCEEDANCETHRESHOLD.sh │ │ │ ├── run_compute_exceedance_rates_for_threshold_depth_logic_tree_mean.sh │ │ │ ├── run_compute_exceedance_rates_for_threshold_max_stages_logic_tree_mean.sh │ │ │ ├── run_compute_exceedance_rates_for_threshold_max_stages_logic_tree_mean_sapphirerapids.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_DEPTH___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_FLUX___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_SPEED___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ ├── run_compute_thresholds_at_exceedance_rate_of_epistemic_uncertainty_percentile_MAX_STAGE___MIN_DOMAIN_INDEX_____MAX_DOMAIN_INDEX__.sh │ │ │ ├── test_compute_exceedance_rates_at_epistemic_uncertainty.R │ │ │ ├── test_compute_threshold_at_exceedance_rate_of_epistemic_uncertainty.R │ │ │ ├── test_compute_threshold_at_exceedance_rate_of_epistemic_uncertainty_adaptive.R │ │ │ └── test_exceedance_rate_raster_calculations.R │ │ └── template_data_package │ │ │ ├── JATWC_inundation_zones │ │ │ ├── README.md │ │ │ └── make_pdf.sh │ │ │ ├── Probabilistic_inundation_hazard │ │ │ ├── README.md │ │ │ └── make_pdf.sh │ │ │ ├── README.md │ │ │ └── make_pdf.sh │ ├── breakwalls │ │ ├── MANUAL_WALLS │ │ │ ├── README.md │ │ │ ├── clarence_river_highwall_A.csv │ │ │ ├── clarence_river_highwall_B.csv │ │ │ ├── clarence_river_highwall_C.csv │ │ │ ├── clarence_river_highwall_D.csv │ │ │ ├── collis_wall.csv │ │ │ ├── make_manual_walls.R │ │ │ ├── middle_wall.csv │ │ │ ├── middle_wall_2.csv │ │ │ └── middle_wall_3.csv │ │ ├── README.md │ │ ├── ballina │ │ │ ├── ballina_entrance_north.csv │ │ │ └── ballina_entrance_south.csv │ │ ├── batemans │ │ │ ├── batemans_wharf_1.csv │ │ │ └── batemans_wharf_2.csv │ │ ├── bellinger │ │ │ ├── bellinger_1.csv │ │ │ └── bellinger_2.csv │ │ ├── belmore_basin │ │ │ └── belmore_basin_1.csv │ │ ├── blacksmiths │ │ │ └── blacksmiths_road.csv │ │ ├── botany_bay │ │ │ └── botany_bay_1.csv │ │ ├── breakwalls_file_list.txt │ │ ├── breakwalls_file_list_relative_path.txt │ │ ├── clarance_river │ │ │ ├── clarance_river_entrance_north.csv │ │ │ └── clarance_river_entrance_south.csv │ │ ├── coffs_harbour │ │ │ ├── coffs_harbour_1.csv │ │ │ ├── coffs_harbour_2.csv │ │ │ ├── coffs_harbour_3.csv │ │ │ └── coffs_harbour_4.csv │ │ ├── convert_lines_to_lon_lat_maxelev.R │ │ ├── crowdy_head │ │ │ ├── crowdy_head.csv │ │ │ └── crowdy_head_B.csv │ │ ├── forster │ │ │ ├── forster_north.csv │ │ │ └── forster_south.csv │ │ ├── harrington │ │ │ ├── harrington_1.csv │ │ │ └── harrington_2.csv │ │ ├── karang │ │ │ └── karang_south.csv │ │ ├── lake_illawarra │ │ │ ├── lake_illawarra_entrance_north.csv │ │ │ ├── lake_illawarra_entrance_south.csv │ │ │ └── lake_illawarra_inside_south.csv │ │ ├── lake_macquarie │ │ │ ├── lake_macquarie_north.csv │ │ │ └── lake_macquarie_south.csv │ │ ├── make_breakwalls_eastcoast.R │ │ ├── make_breakwalls_list_have_fullpath.R │ │ ├── moruya │ │ │ ├── entrance_north.csv │ │ │ ├── estuary_south_1.csv │ │ │ ├── estuary_south_2.csv │ │ │ ├── estuary_south_3.csv │ │ │ └── outside_bathy2018_lidar │ │ │ │ ├── estuary_south_4.csv │ │ │ │ └── estuary_south_5.csv │ │ ├── nambucca │ │ │ └── nambucca_north.csv │ │ ├── newcastle │ │ │ ├── newcastle1.csv │ │ │ └── newcastle2.csv │ │ ├── north_haven │ │ │ ├── north_haven_north.csv │ │ │ └── north_haven_south.csv │ │ ├── portKembla │ │ │ ├── portKembla.csv │ │ │ └── portKembla2.csv │ │ ├── port_macquarie │ │ │ ├── port_macquarie_north.csv │ │ │ └── port_macquarie_south.csv │ │ ├── shoalhaven │ │ │ └── shoalhaven_entrance_north.csv │ │ ├── swrocks │ │ │ ├── swrocks_north.csv │ │ │ └── swrocks_south.csv │ │ ├── tweed │ │ │ ├── tweed_north.csv │ │ │ ├── tweed_north_b.csv │ │ │ └── tweed_south.csv │ │ └── ulladulla │ │ │ ├── ulladulla.csv │ │ │ └── ulladulla2.csv │ ├── elevation │ │ ├── README.md │ │ ├── compare_md5sum_NCI_vs_home.R │ │ ├── create_elevation_preference_list_NCI.R │ │ ├── create_elevation_preference_list_home_machine.R │ │ ├── open_estuary_entrances │ │ │ ├── README.md │ │ │ ├── estuary_entrance_polygons_values.csv │ │ │ ├── estuary_entrance_polygons_values_relative_file_paths.csv │ │ │ ├── make_estuary_entrance_polygons_values_file.R │ │ │ ├── make_file_paths_absolute.R │ │ │ └── open_entrance_polygons │ │ │ │ ├── estuary_entrance_10_1.csv │ │ │ │ ├── estuary_entrance_11_1.csv │ │ │ │ ├── estuary_entrance_12_1.csv │ │ │ │ ├── estuary_entrance_13_1.csv │ │ │ │ ├── estuary_entrance_14_1.csv │ │ │ │ ├── estuary_entrance_15_1.csv │ │ │ │ ├── estuary_entrance_16_1.csv │ │ │ │ ├── estuary_entrance_17_1.csv │ │ │ │ ├── estuary_entrance_18_1.csv │ │ │ │ ├── estuary_entrance_19_1.csv │ │ │ │ ├── estuary_entrance_1_1.csv │ │ │ │ ├── estuary_entrance_20_1.csv │ │ │ │ ├── estuary_entrance_21_1.csv │ │ │ │ ├── estuary_entrance_22_1.csv │ │ │ │ ├── estuary_entrance_23_1.csv │ │ │ │ ├── estuary_entrance_24_1.csv │ │ │ │ ├── estuary_entrance_25_1.csv │ │ │ │ ├── estuary_entrance_26_1.csv │ │ │ │ ├── estuary_entrance_27_1.csv │ │ │ │ ├── estuary_entrance_28_1.csv │ │ │ │ ├── estuary_entrance_29_1.csv │ │ │ │ ├── estuary_entrance_2_1.csv │ │ │ │ ├── estuary_entrance_30_1.csv │ │ │ │ ├── estuary_entrance_31_1.csv │ │ │ │ ├── estuary_entrance_32_1.csv │ │ │ │ ├── estuary_entrance_33_1.csv │ │ │ │ ├── estuary_entrance_34_1.csv │ │ │ │ ├── estuary_entrance_35_1.csv │ │ │ │ ├── estuary_entrance_36_1.csv │ │ │ │ ├── estuary_entrance_37_1.csv │ │ │ │ ├── estuary_entrance_38_1.csv │ │ │ │ ├── estuary_entrance_39_1.csv │ │ │ │ ├── estuary_entrance_3_1.csv │ │ │ │ ├── estuary_entrance_40_1.csv │ │ │ │ ├── estuary_entrance_41_1.csv │ │ │ │ ├── estuary_entrance_42_1.csv │ │ │ │ ├── estuary_entrance_43_1.csv │ │ │ │ ├── estuary_entrance_44_1.csv │ │ │ │ ├── estuary_entrance_45_1.csv │ │ │ │ ├── estuary_entrance_46_1.csv │ │ │ │ ├── estuary_entrance_47_1.csv │ │ │ │ ├── estuary_entrance_48_1.csv │ │ │ │ ├── estuary_entrance_49_1.csv │ │ │ │ ├── estuary_entrance_4_1.csv │ │ │ │ ├── estuary_entrance_50_1.csv │ │ │ │ ├── estuary_entrance_51_1.csv │ │ │ │ ├── estuary_entrance_52_1.csv │ │ │ │ ├── estuary_entrance_5_1.csv │ │ │ │ ├── estuary_entrance_6_1.csv │ │ │ │ ├── estuary_entrance_7_1.csv │ │ │ │ ├── estuary_entrance_8_1.csv │ │ │ │ └── estuary_entrance_9_1.csv │ │ ├── ordered_files_home_machine │ │ │ ├── Elevation_rasters_scraped_from_QGIS_file.csv │ │ │ ├── README.md │ │ │ └── extract_elevation_filenames.R │ │ ├── ordered_files_home_machine_rev1 │ │ │ ├── Elevation_rasters_scraped_from_QGIS_file.csv │ │ │ ├── README.md │ │ │ └── extract_elevation_filenames.R │ │ └── swals_elevation_files_in_preference_order.txt │ ├── inverts │ │ ├── README.md │ │ ├── coffs_harbour_inner_entrance │ │ │ └── coffs_harbour_inner_entrance.csv │ │ ├── inverts_file_list.txt │ │ ├── inverts_file_list_relative_path.txt │ │ ├── make_inverts_eastcoast.R │ │ ├── make_inverts_list_have_fullpath.R │ │ ├── swr_channel │ │ │ └── swr_channel.csv │ │ └── ulladulla_entrance │ │ │ └── ulladulla_entrance.csv │ ├── multidomain_design │ │ ├── README.md │ │ ├── aggregate_boxes.R │ │ ├── create_boxes.R │ │ ├── domains_2023_11_09_with_LHI_Middleton_Norfolk0.5_0.166666666666667_0.0333333333333333 │ │ │ ├── first_level_nesting.csv │ │ │ ├── first_level_nesting_domains │ │ │ │ ├── first_level_nesting_domains.dbf │ │ │ │ ├── first_level_nesting_domains.prj │ │ │ │ ├── first_level_nesting_domains.shp │ │ │ │ └── first_level_nesting_domains.shx │ │ │ ├── first_level_nesting_edited.csv │ │ │ ├── load_balance_default.txt │ │ │ ├── second_level_nesting.csv │ │ │ ├── second_level_nesting_domains │ │ │ │ ├── second_level_nesting_domains.dbf │ │ │ │ ├── second_level_nesting_domains.prj │ │ │ │ ├── second_level_nesting_domains.shp │ │ │ │ └── second_level_nesting_domains.shx │ │ │ ├── second_level_nesting_edited.csv │ │ │ ├── third_level_nesting.csv │ │ │ ├── third_level_nesting_domains │ │ │ │ ├── third_level_nesting_domains.dbf │ │ │ │ ├── third_level_nesting_domains.prj │ │ │ │ ├── third_level_nesting_domains.shp │ │ │ │ └── third_level_nesting_domains.shx │ │ │ └── third_level_nesting_edited.csv │ │ └── edit_boxes.R │ ├── point_gauges │ │ ├── README.md │ │ ├── make_point_gauge_locations.R │ │ ├── point_gauges_2023_08_08.csv │ │ └── point_gauges_2023_11_14.csv │ ├── sources │ │ ├── README.md │ │ ├── hazard │ │ │ ├── README.md │ │ │ ├── importance_sampling_utilities.R │ │ │ ├── multiple_importance_sampling_weights │ │ │ │ ├── README.md │ │ │ │ ├── compute_MIS_weights.R │ │ │ │ ├── compute_MIS_weights_per_source_zone.R │ │ │ │ ├── spatial_barplots.R │ │ │ │ └── spatial_weights_IDW.R │ │ │ ├── scenarios_ID1315.5 │ │ │ │ ├── README.md │ │ │ │ ├── R_431_NCI_modules.sh │ │ │ │ ├── create_initial_conditions_for_scenarios.R │ │ │ │ ├── create_scenarios.R │ │ │ │ ├── plot_sampling_approach_example.R │ │ │ │ ├── run_create_scenarios.sh │ │ │ │ └── sampling_config.R │ │ │ ├── scenarios_ID4186.3 │ │ │ │ ├── README.md │ │ │ │ ├── R_431_NCI_modules.sh │ │ │ │ ├── create_initial_conditions_for_scenarios.R │ │ │ │ ├── create_scenarios.R │ │ │ │ ├── plot_sampling_approach_example.R │ │ │ │ ├── run_create_scenarios.sh │ │ │ │ └── sampling_config.R │ │ │ └── scenarios_ID710.5 │ │ │ │ ├── README.md │ │ │ │ ├── R_431_NCI_modules.sh │ │ │ │ ├── create_initial_conditions_for_scenarios.R │ │ │ │ ├── create_scenarios.R │ │ │ │ ├── plot_sampling_approach_example.R │ │ │ │ └── sampling_config.R │ │ ├── like_historic │ │ │ ├── Chile1960 │ │ │ │ ├── FujiSatake2013 │ │ │ │ │ └── Okada_vertical_component.R │ │ │ │ └── HoEtAl2019 │ │ │ │ │ ├── jgrb53314-sup-0001-2018jb016996-si.txt │ │ │ │ │ └── reconstruct_free_surface.R │ │ │ ├── Chile2010 │ │ │ │ ├── Lorito2011 │ │ │ │ │ ├── LoritoEtAl2011_source_model.csv │ │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ │ ├── parse_fsp.R │ │ │ │ │ └── s2010MAULEC02LORI.fsp │ │ │ │ └── PTHA18_HS_128450 │ │ │ │ │ └── README.md │ │ │ ├── Chile2014 │ │ │ │ └── README.md │ │ │ ├── Chile2015 │ │ │ │ └── WilliamsonEtAl2017 │ │ │ │ │ ├── Okada_vertical_deformation.R │ │ │ │ │ └── subfaults.csv │ │ │ ├── KermadecTonga2021 │ │ │ │ ├── PTHA_HS27496 │ │ │ │ │ └── README.md │ │ │ │ ├── PTHA_HS27533 │ │ │ │ │ └── README.md │ │ │ │ └── Romano2021 │ │ │ │ │ ├── FD_input_TRI.inp │ │ │ │ │ ├── README_GD.md │ │ │ │ │ └── convert_for_TFD.R │ │ │ ├── NewHebrides2021 │ │ │ │ ├── GusmanEtAl │ │ │ │ │ ├── Okada_vertical_deformation.R │ │ │ │ │ └── source_inversion_GusmanEtAl.txt │ │ │ │ └── PTHA_HS4666 │ │ │ │ │ └── README.md │ │ │ ├── Puysegur2009 │ │ │ │ └── PTHA18_HS_1567 │ │ │ │ │ └── README.md │ │ │ ├── README.md │ │ │ ├── Sumatra2004 │ │ │ │ ├── FujiSatake2007 │ │ │ │ │ ├── Fuji_satake_2004_joint_inversion_1ms.txt │ │ │ │ │ └── Okada_vertical_component.R │ │ │ │ └── PTHA18_VAUS107476 │ │ │ │ │ └── README.md │ │ │ ├── Tohoku2011 │ │ │ │ └── YamazakiEtAl2018 │ │ │ │ │ ├── Okada_vertical_component.R │ │ │ │ │ └── jgrb52507-sup-0002-Data_S2.txt │ │ │ ├── apply_kajiura_to_rasters.R │ │ │ └── solomon2007 │ │ │ │ └── README.md │ │ └── test │ │ │ ├── README.md │ │ │ ├── extreme_source_kt43731_times_5 │ │ │ └── make_kt43713_times_5.R │ │ │ └── small_source_solomon2007_divided_by_1000 │ │ │ └── make_solomon2007_divided_by_1000.R │ └── swals │ │ ├── OUTPUTS │ │ ├── README_FILE_LOCATIONS.md │ │ └── copy_model_outputs_to_mdss.sh │ │ ├── README.md │ │ ├── R_431_NCI_modules.sh │ │ ├── SWALS_ifort_modules_2023_B.sh │ │ ├── bzip2_some_files.R │ │ ├── count_model_cells.R │ │ ├── create_plots_from_untarred_multidomain_dirs.R │ │ ├── create_random_ptha_qsub_scripts_sealevel110cm.R │ │ ├── create_random_ptha_qsub_scripts_sealevel110cm_ID1315p5.R │ │ ├── create_random_ptha_qsub_scripts_sealevel110cm_ID4186.3.R │ │ ├── create_tarred_rasters_from_tarred_multidomains.R │ │ ├── get_elevation_contour.R │ │ ├── get_max_stage_at_an_elevation_contour.R │ │ ├── load_balance_script.R │ │ ├── make_default_load_balance_file_for_convergencetest.R │ │ ├── make_domains_shapefile.R │ │ ├── make_folders_and_copy_gauges.R │ │ ├── make_folders_and_copy_rasters.R │ │ ├── make_initial_conditions_complex_historical_events.R │ │ ├── make_model_ifort_sapphirerapids │ │ ├── make_rasters.R │ │ ├── model.f90 │ │ ├── model_initial_conditions_mod.f90 │ │ ├── model_multidomain_design_mod.f90 │ │ ├── multidomain_design_control_NNL4_1arcminoffshore.nml │ │ ├── multidomain_design_control_NNL4_1arcminoffshore_12hrs.nml │ │ ├── multidomain_design_control_NNL4_1arcminoffshore_12hrs_final.nml │ │ ├── multidomain_design_control_NNL4_1arcminoffshore_12hrs_final_CONVERGENCE.nml │ │ ├── multidomain_design_control_NNL4_1arcminoffshore_CONVERGENCE.nml │ │ ├── multidomain_design_control_NNL4_1arcminoffshore_NZ.nml │ │ ├── multidomain_design_control_NNL4_1arcminoffshore_NZ_defaultloadbalance.nml │ │ ├── multidomain_design_control_NNL4_1arcminoffshore_defaultloadbalance.nml │ │ ├── multidomain_design_control_NNL4_1arcminoffshore_defaultloadbalance_CONVERGENCE.nml │ │ ├── multidomain_design_control_NNL4_1arcminoffshore_elevationsourceindex.nml │ │ ├── multidomain_design_control_NNL4_1arcminoffshore_mimicdispersion.nml │ │ ├── multidomain_design_control_NNL4_1arcminoffshore_timegrids.nml │ │ ├── plot_convergence_test.R │ │ ├── plots │ │ ├── plot_Neds_beach_time_series_newhebrides2021.R │ │ ├── plot_gauges_chile1960.R │ │ ├── plot_gauges_chile2010.R │ │ ├── plot_gauges_chile2014.R │ │ ├── plot_gauges_chile2015.R │ │ ├── plot_gauges_generic_include.R │ │ ├── plot_gauges_kermadec2021.R │ │ ├── plot_gauges_newhebrides2021.R │ │ ├── plot_gauges_puysegur2009.R │ │ ├── plot_gauges_solomon2007.R │ │ ├── plot_gauges_sumatra2004.R │ │ ├── plot_gauges_tohoku2011.R │ │ ├── process_gauges_chile1960.R │ │ ├── process_gauges_chile2010.R │ │ ├── process_gauges_chile2014.R │ │ ├── process_gauges_chile2015.R │ │ ├── process_gauges_generic_include.R │ │ ├── process_gauges_kermadec2021.R │ │ ├── process_gauges_newhebrides2021.R │ │ ├── process_gauges_puysegur2009.R │ │ ├── process_gauges_solomon2007.R │ │ ├── process_gauges_sumatra2004.R │ │ ├── process_gauges_tohoku2011.R │ │ ├── run_all_plots.sh │ │ ├── run_all_processing_Dec_2023.sh │ │ └── run_all_processing_Oct2023.sh │ │ ├── report_domain_runtimes.R │ │ ├── run_bzip2_some_files.sh │ │ ├── run_create_tarred_rasters_from_tarred_multidomains.sh │ │ ├── run_create_tarred_rasters_from_tarred_multidomains_ID1315.5.sh │ │ ├── run_model_Chile2010_Lorito11.sh │ │ ├── run_model_Chile2010_PTHA.sh │ │ ├── run_model_Chile2014_PTHA18_HS80427.sh │ │ ├── run_model_Chile2015_Williamson17.sh │ │ ├── run_model_Kermadec2021_PTHA.sh │ │ ├── run_model_Kermadec2021_PTHA_b.sh │ │ ├── run_model_Kermadec2021_Romano.sh │ │ ├── run_model_Newhebrides2021_Gusman_Kajiura.sh │ │ ├── run_model_Newhebrides2021_Gusman_Kajiura_mimicdispersion.sh │ │ ├── run_model_Newhebrides2021_Gusman_noKajiura.sh │ │ ├── run_model_Newhebrides2021_PTHA.sh │ │ ├── run_model_Puysegur2009_PTHA18.sh │ │ ├── run_model_Puysegur2009_PTHA18_1788.sh │ │ ├── run_model_Sumatra2004_Fujii.sh │ │ ├── run_model_Sumatra2004_PTHA18.sh │ │ ├── run_model_chile1960_FujiiSatake.sh │ │ ├── run_model_chile1960_HoEtAl.sh │ │ ├── run_model_extreme_source.sh │ │ ├── run_model_kt43731.sh │ │ ├── run_model_kt43731_12hrs.sh │ │ ├── run_model_kt43731_12hrs_convergence.sh │ │ ├── run_model_kt43731_12hrs_convergence_final.sh │ │ ├── run_model_kt43731_12hrs_final.sh │ │ ├── run_model_small_source.sh │ │ ├── run_model_solomon2007.sh │ │ ├── run_model_tohoku2011_Yamazaki.sh │ │ ├── run_ptha18_NSW2023b_ID710.5_sealevel110cm_1093_fixfailed.sh │ │ ├── run_test.sh │ │ ├── run_test_model_sapphirerapids.sh │ │ ├── run_test_model_sapphirerapids_convergence.sh │ │ ├── run_test_model_with_load_balance_sapphirerapids_convergence.sh │ │ ├── run_test_model_with_loadbalance_and_elevationsource_sapphirerapids.sh │ │ ├── run_test_model_with_loadbalance_sapphirerapids.sh │ │ ├── tar_and_remove_matching_dir.R │ │ └── tar_old_runs.sh └── probabilistic_inundation_tonga2020 │ ├── README.md │ ├── analysis │ ├── README.md │ ├── check_log_files │ │ ├── README.md │ │ └── check_log_files.R │ └── probabilistic_inundation │ │ ├── README.md │ │ ├── depth_vs_exrate_at_gauge.R │ │ ├── make_probabilistic_inundation.sh │ │ ├── plot_depth_raster_at_target_exrates.R │ │ ├── plot_depth_vs_exrate_at_parliament.R │ │ ├── plot_stage_vs_exrate_at_gauge_3458.R │ │ ├── probabilistic_inundation.R │ │ ├── ptha18_tonga_MSL0_stage_vs_rate_validation_at_ptha18_point_3458.png │ │ └── raster_plots.R │ ├── elevation │ ├── README.md │ ├── for_model │ │ └── README.md │ └── walls │ │ ├── README.md │ │ ├── coast01 │ │ ├── coast01.dbf │ │ ├── coast01.prj │ │ ├── coast01.qpj │ │ ├── coast01.shp │ │ └── coast01.shx │ │ ├── coast02 │ │ ├── coast02.dbf │ │ ├── coast02.prj │ │ ├── coast02.qpj │ │ ├── coast02.shp │ │ └── coast02.shx │ │ ├── coast03 │ │ ├── coast03.dbf │ │ ├── coast03.prj │ │ ├── coast03.qpj │ │ ├── coast03.shp │ │ └── coast03.shx │ │ ├── coast04 │ │ ├── coast04.dbf │ │ ├── coast04.prj │ │ ├── coast04.qpj │ │ ├── coast04.shp │ │ └── coast04.shx │ │ ├── coast05 │ │ ├── coast05.dbf │ │ ├── coast05.prj │ │ ├── coast05.qpj │ │ ├── coast05.shp │ │ └── coast05.shx │ │ ├── coast06 │ │ ├── coast06.dbf │ │ ├── coast06.prj │ │ ├── coast06.qpj │ │ ├── coast06.shp │ │ └── coast06.shx │ │ ├── coast07 │ │ ├── coast07.dbf │ │ ├── coast07.prj │ │ ├── coast07.qpj │ │ ├── coast07.shp │ │ └── coast07.shx │ │ ├── coast08 │ │ ├── coast08.dbf │ │ ├── coast08.prj │ │ ├── coast08.qpj │ │ ├── coast08.shp │ │ └── coast08.shx │ │ ├── coast09 │ │ ├── coast09.dbf │ │ ├── coast09.prj │ │ ├── coast09.qpj │ │ ├── coast09.shp │ │ └── coast09.shx │ │ ├── coast10 │ │ ├── coast10.dbf │ │ ├── coast10.prj │ │ ├── coast10.qpj │ │ ├── coast10.shp │ │ └── coast10.shx │ │ ├── coast11 │ │ ├── coast11.dbf │ │ ├── coast11.prj │ │ ├── coast11.qpj │ │ ├── coast11.shp │ │ └── coast11.shx │ │ ├── coast12 │ │ ├── coast12.dbf │ │ ├── coast12.prj │ │ ├── coast12.qpj │ │ ├── coast12.shp │ │ └── coast12.shx │ │ ├── coast13 │ │ ├── coast13.dbf │ │ ├── coast13.prj │ │ ├── coast13.qpj │ │ ├── coast13.shp │ │ └── coast13.shx │ │ ├── coast14 │ │ ├── coast14.dbf │ │ ├── coast14.prj │ │ ├── coast14.qpj │ │ ├── coast14.shp │ │ └── coast14.shx │ │ ├── convert_lines_to_lon_lat_maxelev.R │ │ ├── make_breakwalls.R │ │ ├── ridge01 │ │ ├── ridge01.dbf │ │ ├── ridge01.prj │ │ ├── ridge01.qpj │ │ ├── ridge01.shp │ │ └── ridge01.shx │ │ ├── road01 │ │ ├── road01.dbf │ │ ├── road01.prj │ │ ├── road01.qpj │ │ ├── road01.shp │ │ └── road01.shx │ │ ├── road02 │ │ ├── road02.dbf │ │ ├── road02.prj │ │ ├── road02.qpj │ │ ├── road02.shp │ │ └── road02.shx │ │ ├── road03 │ │ ├── road03.dbf │ │ ├── road03.prj │ │ ├── road03.qpj │ │ ├── road03.shp │ │ └── road03.shx │ │ ├── road04 │ │ ├── road04.dbf │ │ ├── road04.prj │ │ ├── road04.qpj │ │ ├── road04.shp │ │ └── road04.shx │ │ ├── road05 │ │ ├── road05.dbf │ │ ├── road05.prj │ │ ├── road05.qpj │ │ ├── road05.shp │ │ └── road05.shx │ │ ├── road06 │ │ ├── road06.dbf │ │ ├── road06.prj │ │ ├── road06.qpj │ │ ├── road06.shp │ │ └── road06.shx │ │ ├── road07 │ │ ├── road07.dbf │ │ ├── road07.prj │ │ ├── road07.qpj │ │ ├── road07.shp │ │ └── road07.shx │ │ ├── road08 │ │ ├── road08.dbf │ │ ├── road08.prj │ │ ├── road08.qpj │ │ ├── road08.shp │ │ └── road08.shx │ │ ├── road09 │ │ ├── road09.dbf │ │ ├── road09.prj │ │ ├── road09.qpj │ │ ├── road09.shp │ │ └── road09.shx │ │ ├── road10 │ │ ├── road10.dbf │ │ ├── road10.prj │ │ ├── road10.qpj │ │ ├── road10.shp │ │ └── road10.shx │ │ ├── road11 │ │ ├── road11.dbf │ │ ├── road11.prj │ │ ├── road11.qpj │ │ ├── road11.shp │ │ └── road11.shx │ │ ├── road12 │ │ ├── road12.dbf │ │ ├── road12.prj │ │ ├── road12.qpj │ │ ├── road12.shp │ │ └── road12.shx │ │ ├── road13 │ │ ├── road13.dbf │ │ ├── road13.prj │ │ ├── road13.qpj │ │ ├── road13.shp │ │ └── road13.shx │ │ ├── road14 │ │ ├── road14.dbf │ │ ├── road14.prj │ │ ├── road14.qpj │ │ ├── road14.shp │ │ └── road14.shx │ │ └── road15 │ │ ├── road15.dbf │ │ ├── road15.prj │ │ ├── road15.qpj │ │ ├── road15.shp │ │ └── road15.shx │ ├── gauges │ ├── README.md │ ├── nukualofa │ │ ├── BOM_2009_2010 │ │ │ ├── nukualofa_chile2010_detided.csv │ │ │ ├── nukualofa_samoa2009_detided.csv │ │ │ └── parse_gauges.R │ │ ├── BOM_2014_2020 │ │ │ ├── monthly_sea_levels_summary.csv │ │ │ ├── nukualofa_chile2015_detided.csv │ │ │ └── parse_BOM_2014_2020.R │ │ ├── README.md │ │ ├── Tohoku2011_IOC_Sealevel │ │ │ ├── nukualofa_tohoku_tsunami_detided.csv │ │ │ └── read_gauge.R │ │ ├── Tonga2006_BOM │ │ │ ├── nukualofa_2006_tsunami_detided.csv │ │ │ └── parse_data.R │ │ ├── get_gauge_data_for_event.R │ │ └── spectral_highpass_filter.R │ └── point_gauges │ │ └── point_gauges_tonga.csv │ ├── sources │ ├── README.md │ ├── like_historic │ │ └── README.md │ └── random │ │ ├── README.md │ │ ├── R_400_NCI_modules.sh │ │ ├── generate_initial_conditions.R │ │ ├── get_interactive_job.sh │ │ ├── random_scenarios_kermadectonga2_hukurangi_segment_HS.csv │ │ ├── random_scenarios_kermadectonga2_kermadec_segment_HS.csv │ │ ├── random_scenarios_kermadectonga2_tonga_segment_HS.csv │ │ ├── random_scenarios_kermadectonga2_unsegmented_HS.csv │ │ └── select_random_scenarios.R │ └── swals │ ├── README.md │ ├── R_400_NCI_modules.sh │ ├── SWALS_ifort_modules.sh │ ├── create_all_depth_rasters.R │ ├── create_random_ptha_qsub_scripts.R │ ├── create_random_ptha_qsub_scripts_meshrefine2_msl0.R │ ├── create_random_ptha_qsub_scripts_msl0.8.R │ ├── load_balance_partition.txt │ ├── make_model_ifort │ ├── make_rasters.R │ ├── model.f90 │ ├── model_local_routines.f90 │ ├── plot_max_stage_and_elevation.R │ ├── plot_validation_runs.R │ ├── plots │ └── plot_all.R │ ├── run_failed_after_recompiling_without_local_timestepping.sh │ ├── run_validation_Chile2010.sh │ ├── run_validation_Chile2015.sh │ ├── run_validation_Tohoku2011_PTHA18_46994.sh │ └── run_validation_Tonga2006_load_balance_no_animation.sh ├── propagation ├── README.md └── SWALS │ ├── README.md │ ├── SOLVERS.md │ ├── documentation_ford.md │ ├── examples │ ├── README.md │ ├── circular_island │ │ ├── README.md │ │ ├── analytical_solution_zhang.R │ │ ├── circular_island_testcase.f90 │ │ ├── make_circular_island │ │ ├── plot.R │ │ └── run_model.sh │ ├── create_readme_pdfs.sh │ ├── dambreak │ │ ├── README.md │ │ ├── dam_break.f90 │ │ ├── dam_break_analytical.R │ │ ├── make_dam_break │ │ ├── plot.R │ │ └── run_model.sh │ ├── generic_example │ │ ├── README.md │ │ ├── check_rise_time_jobs.R │ │ ├── dart_test_data │ │ │ ├── 21401.csv │ │ │ ├── 21413.csv │ │ │ ├── 21414.csv │ │ │ ├── 21415.csv │ │ │ ├── 21418.csv │ │ │ ├── 21419.csv │ │ │ └── dart_locations.csv │ │ ├── generic_model.f90 │ │ ├── japan_dem.tif │ │ ├── make_generic_model │ │ ├── make_generic_model_nocoriolis │ │ ├── model_global_4m.in │ │ ├── plot.R │ │ ├── ptha_scenario │ │ │ └── initial_condition_1.tif │ │ ├── run_model.sh │ │ ├── test_model_japan_almost_linear.in │ │ ├── test_model_japan_almost_linear_with_nonlinear_friction.in │ │ ├── test_model_japan_cliffs.in │ │ ├── test_model_japan_leapfrog_nonlinear.in │ │ ├── test_model_japan_linear.in │ │ ├── test_model_japan_linear_rise_time.in │ │ ├── test_model_japan_linear_risetime0.in │ │ ├── test_model_japan_linear_with_nonlinear_friction.in │ │ ├── test_model_japan_rk2_rise_time.in │ │ └── test_model_japan_rk2_risetime0.in │ ├── isolated_building │ │ ├── README.md │ │ ├── make_model │ │ ├── model.f90 │ │ ├── plot_results.R │ │ ├── point_gauges.csv │ │ ├── poly │ │ │ ├── building.csv │ │ │ ├── dam_1.csv │ │ │ ├── dam_2.csv │ │ │ └── notes-building.R │ │ ├── run_model.sh │ │ └── tjhr_a_9521830_sup_0001 │ │ │ ├── Readme.txt │ │ │ ├── building_gauges_h.txt │ │ │ ├── building_gauges_uv.txt │ │ │ ├── building_vel_t01.txt │ │ │ ├── building_vel_t03.txt │ │ │ ├── building_vel_t05.txt │ │ │ ├── building_vel_t10.txt │ │ │ └── building_vel_t15.txt │ ├── landslide_tsunami │ │ ├── DATA │ │ │ ├── Shoreline.csv │ │ │ ├── initial_condition.txt │ │ │ ├── readme.txt │ │ │ ├── t160.csv │ │ │ ├── t175.csv │ │ │ └── t220.csv │ │ ├── README.md │ │ ├── benchmark_problem1.f90 │ │ ├── make_benchmark_problem1 │ │ ├── plot_results.R │ │ └── run_model.sh │ ├── merewether │ │ ├── README.md │ │ ├── Road │ │ │ └── RoadPolygon.csv │ │ ├── houses │ │ │ ├── house000.csv │ │ │ ├── house001.csv │ │ │ ├── house002.csv │ │ │ ├── house003.csv │ │ │ ├── house004.csv │ │ │ ├── house005.csv │ │ │ ├── house006.csv │ │ │ ├── house007.csv │ │ │ ├── house008.csv │ │ │ ├── house009.csv │ │ │ ├── house010.csv │ │ │ ├── house011.csv │ │ │ ├── house012.csv │ │ │ ├── house013.csv │ │ │ ├── house014.csv │ │ │ ├── house015.csv │ │ │ ├── house016.csv │ │ │ ├── house017.csv │ │ │ ├── house018.csv │ │ │ ├── house019.csv │ │ │ ├── house020.csv │ │ │ ├── house021.csv │ │ │ ├── house022.csv │ │ │ ├── house023.csv │ │ │ ├── house024.csv │ │ │ ├── house025.csv │ │ │ ├── house026.csv │ │ │ ├── house027.csv │ │ │ ├── house028.csv │ │ │ ├── house029.csv │ │ │ ├── house030.csv │ │ │ ├── house031.csv │ │ │ ├── house032.csv │ │ │ ├── house032_033.csv │ │ │ ├── house033.csv │ │ │ ├── house034.csv │ │ │ ├── house035.csv │ │ │ ├── house036.csv │ │ │ ├── house037.csv │ │ │ ├── house038.csv │ │ │ ├── house039.csv │ │ │ ├── house040.csv │ │ │ ├── house041.csv │ │ │ ├── house042.csv │ │ │ ├── house043.csv │ │ │ ├── house044.csv │ │ │ ├── house045.csv │ │ │ ├── house046.csv │ │ │ ├── house047.csv │ │ │ ├── house048.csv │ │ │ ├── house049.csv │ │ │ ├── house050.csv │ │ │ ├── house051.csv │ │ │ ├── house052.csv │ │ │ ├── house053.csv │ │ │ ├── house054.csv │ │ │ ├── house055.csv │ │ │ ├── house056.csv │ │ │ ├── house057.csv │ │ │ └── house058.csv │ │ ├── houses_filenames.txt │ │ ├── make_merewether_example │ │ ├── merewether_example.f90 │ │ ├── plot.R │ │ ├── point_observations.csv │ │ ├── run_model.sh │ │ └── topography │ │ │ └── topography1.tif │ ├── nesting_plane_wave │ │ ├── README.md │ │ ├── basilisk_model │ │ │ ├── NOTES.md │ │ │ ├── build_and_run.sh │ │ │ ├── plot.R │ │ │ ├── shell_var.sh │ │ │ └── simple_wave.c │ │ ├── make_nesting_reflection │ │ ├── nesting_reflection.f90 │ │ ├── plot.R │ │ └── run_model.sh │ ├── nthmp │ │ ├── BP01 │ │ │ ├── BP1_testcases.f90 │ │ │ ├── README.md │ │ │ ├── make_BP1_testcases │ │ │ ├── plot.R │ │ │ └── run_model.sh │ │ ├── BP02_and_BP05 │ │ │ ├── BP2_testcases.f90 │ │ │ ├── README.md │ │ │ ├── make_BP2_testcases │ │ │ ├── plot.R │ │ │ └── run_model.sh │ │ ├── BP04 │ │ │ ├── BP4_testcases.f90 │ │ │ ├── README.md │ │ │ ├── make_BP4_testcases │ │ │ ├── plot.R │ │ │ └── run_model.sh │ │ ├── BP06 │ │ │ ├── BP06.f90 │ │ │ ├── README.md │ │ │ ├── alternate_runup_data │ │ │ │ ├── README.txt │ │ │ │ ├── caseA.csv │ │ │ │ ├── caseB.csv │ │ │ │ └── caseC.csv │ │ │ ├── convert_obs_to_wavemaker.R │ │ │ ├── funwave_comparison │ │ │ │ ├── README.txt │ │ │ │ ├── caseA │ │ │ │ │ ├── check_results.R │ │ │ │ │ ├── gauge_high_res.txt │ │ │ │ │ ├── input_high_res_nondispersive.txt │ │ │ │ │ ├── max_island_runup.csv │ │ │ │ │ └── run_model.sh │ │ │ │ ├── caseB │ │ │ │ │ ├── check_results.R │ │ │ │ │ ├── gauge_high_res.txt │ │ │ │ │ ├── input_high_res_nondispersive.txt │ │ │ │ │ ├── max_island_runup.csv │ │ │ │ │ └── run_model.sh │ │ │ │ ├── caseC │ │ │ │ │ ├── check_results.R │ │ │ │ │ ├── gauge_high_res.txt │ │ │ │ │ ├── input_high_res_nondispersive.txt │ │ │ │ │ ├── max_island_runup.csv │ │ │ │ │ └── run_model.sh │ │ │ │ └── input.zip │ │ │ ├── gauge_forcing_nonlinear_case1.csv │ │ │ ├── gauge_forcing_nonlinear_case2.csv │ │ │ ├── gauge_forcing_nonlinear_case3.csv │ │ │ ├── make_BP06 │ │ │ ├── plot.R │ │ │ └── run_model.sh │ │ ├── BP07 │ │ │ ├── README.md │ │ │ ├── make_monai │ │ │ ├── monai.f90 │ │ │ ├── plot.R │ │ │ └── run_model.sh │ │ ├── BP09 │ │ │ ├── BP09.f90 │ │ │ ├── README.md │ │ │ ├── compare_logs_coarray_openmp.R │ │ │ ├── compare_logs_openmp_localtimestep.R │ │ │ ├── load_balance_6_trivial.txt │ │ │ ├── load_balance_partition.txt │ │ │ ├── make_BP09 │ │ │ ├── make_BP09_coarray │ │ │ ├── make_BP09_localtimestep │ │ │ ├── plot_results.R │ │ │ ├── run_model.sh │ │ │ ├── run_model_exact_reproduce.sh │ │ │ └── test_min_stage.R │ │ ├── Conical_shelf_lab │ │ │ ├── README.md │ │ │ ├── bathy │ │ │ │ ├── bathy_with_cone.tif │ │ │ │ └── make_bathymetry_from_xyz_data_and_shoal_description.R │ │ │ ├── make_model │ │ │ ├── model.f90 │ │ │ ├── obs_timeseries │ │ │ │ ├── U_RMSA.txt │ │ │ │ ├── U_RMSB.txt │ │ │ │ ├── U_RMSC.txt │ │ │ │ ├── U_Velocity_AverageA.txt │ │ │ │ ├── U_Velocity_AverageB.txt │ │ │ │ ├── U_Velocity_AverageC.txt │ │ │ │ ├── V_RMSA.txt │ │ │ │ ├── V_RMSB.txt │ │ │ │ ├── V_RMSC.txt │ │ │ │ ├── V_Velocity_AverageA.txt │ │ │ │ ├── V_Velocity_AverageB.txt │ │ │ │ ├── V_Velocity_AverageC.txt │ │ │ │ ├── WG1.txt │ │ │ │ ├── WG2.txt │ │ │ │ ├── WG3.txt │ │ │ │ ├── WG4.txt │ │ │ │ ├── WG5.txt │ │ │ │ ├── WG6.txt │ │ │ │ ├── WG7.txt │ │ │ │ ├── WG8.txt │ │ │ │ ├── WG9.txt │ │ │ │ ├── W_RMSA.txt │ │ │ │ ├── W_RMSB.txt │ │ │ │ ├── W_RMSC.txt │ │ │ │ ├── W_Velocity_AverageA.txt │ │ │ │ ├── W_Velocity_AverageB.txt │ │ │ │ └── W_Velocity_AverageC.txt │ │ │ ├── plot.R │ │ │ ├── point_gauge_locations.csv │ │ │ └── run_model.sh │ │ ├── Hilo_Tohoku_tsunami │ │ │ ├── README.md │ │ │ ├── bathymetry │ │ │ │ └── hilo_grid_1_3_arsec.tif │ │ │ ├── boundary │ │ │ │ ├── convert_se_dot_dat_to_boundary_dot_csv.R │ │ │ │ ├── se.dat │ │ │ │ └── se_dat_converted.csv │ │ │ ├── compare_logs_coarray_openmp.R │ │ │ ├── digitize_Lynett2017 │ │ │ │ ├── Model_mean_free_surface_envelope_bottom.csv │ │ │ │ ├── Model_mean_free_surface_envelope_top.csv │ │ │ │ ├── Model_mean_speed_envelope_HA25.csv │ │ │ │ ├── Model_mean_speed_envelope_HA26.csv │ │ │ │ └── README.txt │ │ │ ├── load_balance_partition.txt │ │ │ ├── make_hilo │ │ │ ├── make_hilo_coarray │ │ │ ├── model.f90 │ │ │ ├── plot_results.R │ │ │ ├── point_gauges.csv │ │ │ ├── run_model.sh │ │ │ └── test_data │ │ │ │ ├── HAI1125_detided_harmonic.txt │ │ │ │ ├── HAI1126_detided_harmonic.txt │ │ │ │ └── TG_1617760_detided.txt │ │ ├── README.md │ │ ├── Seaside_OSU_model │ │ │ ├── README.md │ │ │ ├── make_model │ │ │ ├── model.f90 │ │ │ ├── plot.R │ │ │ ├── problem_data │ │ │ │ ├── Gauge_locations_near_city.csv │ │ │ │ ├── Wavegage.txt │ │ │ │ ├── Wavegauge_location_information.csv │ │ │ │ ├── bathy_raster.tif │ │ │ │ ├── other │ │ │ │ │ ├── Location_A1.txt │ │ │ │ │ ├── Location_A2.txt │ │ │ │ │ ├── Location_A3.txt │ │ │ │ │ ├── Location_A4.txt │ │ │ │ │ ├── Location_A5.txt │ │ │ │ │ ├── Location_A6.txt │ │ │ │ │ ├── Location_A7.txt │ │ │ │ │ ├── Location_A8.txt │ │ │ │ │ ├── Location_A9.txt │ │ │ │ │ ├── Location_B1.txt │ │ │ │ │ ├── Location_B2.txt │ │ │ │ │ ├── Location_B3.txt │ │ │ │ │ ├── Location_B4.txt │ │ │ │ │ ├── Location_B5.txt │ │ │ │ │ ├── Location_B6.txt │ │ │ │ │ ├── Location_B7.txt │ │ │ │ │ ├── Location_B8.txt │ │ │ │ │ ├── Location_B9.txt │ │ │ │ │ ├── Location_C1.txt │ │ │ │ │ ├── Location_C2.txt │ │ │ │ │ ├── Location_C3.txt │ │ │ │ │ ├── Location_C4.txt │ │ │ │ │ ├── Location_C5.txt │ │ │ │ │ ├── Location_C6.txt │ │ │ │ │ ├── Location_C7.txt │ │ │ │ │ ├── Location_C8.txt │ │ │ │ │ ├── Location_C9.txt │ │ │ │ │ ├── Location_D1.txt │ │ │ │ │ ├── Location_D2.txt │ │ │ │ │ ├── Location_D3.txt │ │ │ │ │ └── Location_D4.txt │ │ │ │ ├── point_gauge_locations.csv │ │ │ │ ├── ts_5m.txt │ │ │ │ └── ts_from_observations_at_wg1.txt │ │ │ └── run_model.sh │ │ ├── Submerged_Island_Lab │ │ │ ├── README.md │ │ │ ├── make_model │ │ │ ├── model.f90 │ │ │ ├── obs │ │ │ │ ├── SL_S1_U.DAT │ │ │ │ ├── SL_S1_V.DAT │ │ │ │ ├── SL_S2_U.DAT │ │ │ │ └── SL_S2_V.DAT │ │ │ ├── plot_results.R │ │ │ └── run_model.sh │ │ ├── Tauranga_harbour_Tohoku_tsunami │ │ │ ├── README.md │ │ │ ├── bathymetry │ │ │ │ └── TAU_Whole_Harbour_10_m_srf6_rotated.tif │ │ │ ├── boundary │ │ │ │ └── ABeacon_stage_timeseries.csv │ │ │ ├── compare_logs_coarray_openmp.R │ │ │ ├── make_tauranga │ │ │ ├── make_tauranga_coarray │ │ │ ├── plot_results.R │ │ │ ├── point_gauge_locations.csv │ │ │ ├── run_model.sh │ │ │ ├── tauranga.f90 │ │ │ └── test_data │ │ │ │ ├── currents.txt │ │ │ │ ├── port_data.txt │ │ │ │ └── tide_gauge.txt │ │ └── test_repository │ │ │ ├── BP01-DmitryN-Single_wave_on_simple_beach │ │ │ ├── canonical_profiles.txt │ │ │ └── canonical_ts.txt │ │ │ ├── BP02-DmitryN-Solitary_wave_on_composite_beach_analytic │ │ │ ├── ts3a.txt │ │ │ ├── ts3a_analytical.txt │ │ │ ├── ts3b.txt │ │ │ ├── ts3b_analytical.txt │ │ │ ├── ts3c.txt │ │ │ └── ts3c_analytical.txt │ │ │ ├── BP04-JosephZ-Single_wave_on_simple_beach │ │ │ ├── Lab_runup.txt │ │ │ └── profs │ │ │ │ ├── Case0_0185.t=30 │ │ │ │ ├── Case0_0185.t=40 │ │ │ │ ├── Case0_0185.t=50 │ │ │ │ ├── Case0_0185.t=60 │ │ │ │ ├── Case0_0185.t=70 │ │ │ │ ├── Case0_3.t=15 │ │ │ │ ├── Case0_3.t=20 │ │ │ │ ├── Case0_3.t=25 │ │ │ │ └── Case0_3.t=30 │ │ │ ├── BP06-FrankG-Solitary_wave_on_a_conical_island │ │ │ ├── fdbk2abc.txt │ │ │ ├── run2a.txt │ │ │ ├── run2b.txt │ │ │ ├── run2c.txt │ │ │ ├── ts2a.txt │ │ │ ├── ts2b.txt │ │ │ └── ts2cnew1.txt │ │ │ ├── BP07-DmitryN-Monai_valley_beach │ │ │ ├── Benchmark_2_input.txt │ │ │ ├── Frame_10_line.png │ │ │ ├── Frame_25_line.png │ │ │ ├── Frame_40_line.png │ │ │ ├── Frame_55_line.png │ │ │ ├── Frame_70_line.png │ │ │ ├── Monai_bathymetry.tif │ │ │ ├── OBS_RUNUP.txt │ │ │ └── output_ch5-7-9.csv │ │ │ ├── BP09-FrankG-Okushiri_island │ │ │ ├── bathymetry_rasters_continuous │ │ │ │ ├── AO15.tif │ │ │ │ ├── MB05.tif │ │ │ │ ├── MO01.tif │ │ │ │ ├── OK03.tif │ │ │ │ ├── OK08.tif │ │ │ │ └── OK24.tif │ │ │ ├── initial_condition_raster │ │ │ │ └── HNO1993.tif │ │ │ └── test_data │ │ │ │ ├── FieldData_Tohoku.csv │ │ │ │ ├── FieldData_Tsuji.csv │ │ │ │ ├── FieldData_UJNR.csv │ │ │ │ └── README.md │ │ │ └── README.md │ ├── overbank_flow │ │ ├── README.md │ │ ├── make_model │ │ ├── model.f90 │ │ ├── plot_results.R │ │ ├── run_model.sh │ │ └── shiono_knight_model.R │ ├── parabolic_canal │ │ ├── README.md │ │ ├── make_parabolic_canal │ │ ├── parabolic_canal.f90 │ │ ├── plot.R │ │ └── run_model.sh │ ├── paraboloid_bowl │ │ ├── README.md │ │ ├── load_balance_partition.txt │ │ ├── make_paraboloid_bowl │ │ ├── make_paraboloid_bowl_coarray │ │ ├── paraboloid_bowl.f90 │ │ ├── parallel_reproduce.sh │ │ ├── parallel_reproduce_check.R │ │ ├── plot.R │ │ └── run_model.sh │ ├── periodic_convergence │ │ ├── README.md │ │ ├── make_model │ │ ├── model.f90 │ │ ├── run_model.sh │ │ └── test_convergence.R │ ├── periodic_multidomain │ │ ├── README.txt │ │ ├── make_model │ │ └── model.f90 │ ├── radial_dam_break │ │ ├── README.md │ │ ├── make_highres_outputs.R │ │ ├── make_radial_dambreak │ │ ├── plot_results.R │ │ ├── radial_dam_break.f90 │ │ ├── reference_results.csv.zip │ │ └── run_model.sh │ ├── spherical_box │ │ ├── README.md │ │ ├── compare_models.R │ │ ├── make_model │ │ ├── model.f90 │ │ └── run_model.sh │ ├── uniform_channel │ │ ├── README.md │ │ ├── make_uniform_channel │ │ ├── plot_results.R │ │ ├── run_model.sh │ │ └── uniform_channel.f90 │ ├── uniform_slope │ │ ├── README.md │ │ ├── make_uniform_slope │ │ ├── plot_results.R │ │ ├── run_model.sh │ │ └── uniform_slope.f90 │ └── uniform_slope_shallow │ │ ├── README.md │ │ ├── make_uniform_slope │ │ ├── plot_results.R │ │ ├── run_model.sh │ │ └── uniform_slope.f90 │ ├── plot.R │ ├── src │ ├── README.md │ ├── parallel │ │ ├── coarray_intrinsic_alternatives_mod.f90 │ │ ├── coarray_point2point_comms_mod.f90 │ │ ├── point2point_include_recv_p2p.f90 │ │ └── point2point_include_send_p2p.f90 │ ├── raster │ │ ├── read_raster_c.c │ │ └── read_raster_mod.f90 │ ├── shallow_water │ │ ├── README.md │ │ ├── boundary_mod.f90 │ │ ├── cliffs_tolkova_mod.f90 │ │ ├── domain_mod.f90 │ │ ├── domain_mod_compute_fluxes_DE1_inner_include.f90 │ │ ├── domain_mod_compute_fluxes_EEC_include.f90 │ │ ├── domain_mod_compute_fluxes_alternatives_include.f90 │ │ ├── domain_mod_leapfrog_nonlinear_include.f90 │ │ ├── domain_mod_leapfrog_solver_friction_include.f90 │ │ ├── domain_mod_linear_solver_include.f90 │ │ ├── domain_mod_timestepping_alternatives_include.f90 │ │ ├── domain_mod_update_U_DE1_alternatives_include.f90 │ │ ├── domain_mod_update_U_DE1_inner_include.f90 │ │ ├── extrapolation_limiting_mod.f90 │ │ ├── forcing_mod.f90 │ │ ├── global_mod.f90 │ │ ├── multidomain_mod.f90 │ │ ├── nested_grid_comms_mod.f90 │ │ ├── point_gauge_mod.f90 │ │ ├── spherical_mod.f90 │ │ └── timestepping_metadata_mod.f90 │ ├── src_make_commands │ ├── src_make_commands_default │ ├── src_make_commands_intel_llvm │ ├── src_standard_compiler_var │ ├── src_standard_compiler_var_NCI_gadi_ifort │ ├── src_standard_compiler_var_NCI_gadi_ifx │ ├── src_standard_compiler_var_gfortran │ ├── src_standard_compiler_var_gfortran_mpi │ ├── src_standard_compiler_var_ifort │ ├── test_run_commands │ ├── test_run_commands_basic │ ├── test_run_commands_gadi_1node │ ├── test_run_commands_gadi_halfnode │ └── util │ │ ├── burn_into_grid_mod.f90 │ │ ├── date_to_numeric_mod.f90 │ │ ├── file_io_mod.f90 │ │ ├── grid_spacetime_interpolator_mod.f90 │ │ ├── linear_interpolator_mod.f90 │ │ ├── logging_mod.f90 │ │ ├── netcdf_util_mod.f90 │ │ ├── points_in_poly_mod.f90 │ │ ├── qsort_match_include.inc │ │ ├── qsort_mod.f90 │ │ ├── qsort_sort_index_include.inc │ │ ├── ragged_array_mod.f90 │ │ ├── reshape_array_mod.f90 │ │ ├── sort_index_template2.f90 │ │ ├── stop_mod.f90 │ │ ├── timer_mod.f90 │ │ └── which_mod.f90 │ └── tests │ ├── parallel_tests │ ├── README.md │ ├── make_test │ ├── parallel_unit_tests.f90 │ └── run_test.sh │ ├── unit_tests │ ├── README.md │ ├── R_raster_points_test.R │ ├── data │ │ ├── test_rast.tif │ │ └── test_rast_nans.tif │ ├── make_test │ └── unit_tests.f90 │ └── validation_tests │ ├── README.md │ └── run_validations.R └── ptha_access ├── DATA └── README.md ├── DETAILED_README.Rmd ├── DETAILED_README.md ├── INSTALL.Rmd ├── INSTALL.md ├── R ├── config.R ├── get_supporting_data.R └── sum_tsunami_unit_sources.R ├── README.Rmd ├── README.md ├── UPDATES.md ├── example_event_access_scripts ├── README.md ├── extract_a_few_events_adhoc_approach │ ├── README.md │ ├── extract_time_series.R │ ├── quick_plot_stage_at_reference_point.R │ └── save_gauges_timeseries_to_netcdf.R ├── gauge_and_deformation_plots │ ├── Example_plot.png │ ├── README.md │ ├── earthquake_types_plot.R │ ├── find_unit_sources_near_hypocentre.R │ ├── plot_parameters.R │ └── plot_stage_time_series.R ├── maximum_magnitude_posterior_distributions │ ├── Mw_max_percentiles_from_PTHA18.csv │ ├── README.md │ └── compute_Mw_max_uncertainty.R ├── multi_site_scenario_selection │ ├── README.md │ ├── batch_plots_SRC_kermadectonga2_SLP_variable_uniform_CRV_rate_median_EXRATE_4e-04_STGTOL_0.1_NGAUGE_3 │ │ ├── initial_condition_DESIRED_EVENT_ROW_28628.png │ │ └── tsunami_gauges_DESIRED_EVENT_ROW_28628.png │ ├── example_usage.Rmd │ ├── example_usage.md │ ├── figure │ │ ├── scenarioCriteria3-1.png │ │ ├── scenarioCriteria4-1.png │ │ ├── scenarioSubsetting-1.png │ │ └── suggestedUsage-1.png │ ├── select_scenarios.R │ └── test_select_scenarios.R ├── random_scenario_sampling │ ├── README.md │ ├── figure │ │ ├── compareAllApproaches-1.png │ │ ├── plotecdf-1.png │ │ ├── ptha18_tonga_point_plot1-1.png │ │ ├── ptha18_tonga_point_plot1_moresam-1.png │ │ ├── ptha18_tonga_point_plot2-1.png │ │ └── ptha18_tonga_point_plot3-1.png │ ├── random_scenario_sampling.Rmd │ └── random_scenario_sampling.md ├── random_scenarios_non_uniform_and_importance_sampling │ ├── README.md │ ├── figure │ │ ├── plot_optimalNonUniformSampling1-1.png │ │ ├── ptha18_tonga_point_plot1-1.png │ │ ├── ptha18_tonga_point_plot1_moresam-1.png │ │ ├── ptha18_tonga_point_plot3-1.png │ │ ├── ptha18_tonga_point_plot4-1.png │ │ └── ptha18_tonga_point_plot5-1.png │ ├── random_scenario_sampling.Rmd │ ├── random_scenario_sampling.md │ ├── random_scenario_sampling_uncertainty_estimates.Rmd │ └── random_scenario_sampling_uncertainty_estimates.md └── scenarios_similar_to_historical │ ├── README.md │ ├── best_fitting_FAUS.R │ ├── best_fitting_HS.R │ ├── best_fitting_VAUS.R │ ├── find_desired_event_rows.R │ └── get_scenarios_similar_to_historical_events.R ├── figure ├── delayedLinearFriction-1.png ├── getflow-1.png ├── hazard_point_viewer_screenshot1.png ├── 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