├── .idea ├── .gitignore ├── code.iml ├── inspectionProfiles │ ├── Project_Default.xml │ └── profiles_settings.xml ├── misc.xml ├── modules.xml └── vcs.xml ├── DosePrediction ├── DataAugmentation │ ├── __pycache__ │ │ └── augmentation_OpenKBP_C3D.cpython-37.pyc │ └── augmentation_OpenKBP_C3D.py ├── DataLoader │ ├── dataloader_OpenKBP_C3D.py │ ├── dataloader_OpenKBP_linked_monai.py │ └── dataloader_OpenKBP_monai.py ├── Evaluate │ └── evaluate_openKBP.py ├── Models │ ├── Nets │ │ └── blocks_MDUNet.py │ └── Networks │ │ ├── c3d.py │ │ ├── dose_pyfer.py │ │ ├── dosegan.py │ │ ├── hdunet.py │ │ └── models_experiments.py └── Train │ ├── __pycache__ │ └── blocks_MDUNet_ablation.cpython-39.pyc │ ├── config.py │ ├── k_fold_train_light_pyfer.py │ ├── loss.py │ ├── train_light_c3d.py │ ├── train_light_dosegan.py │ ├── train_light_exp_models.py │ ├── train_light_gan.py │ ├── train_light_hdunet.py │ ├── train_light_linked_model.py │ ├── train_light_pyfer.py │ └── tune_light_pyfer.py ├── NetworkTrainer ├── __pycache__ │ ├── network_trainer.cpython-310.pyc │ ├── network_trainer.cpython-37.pyc │ ├── network_trainer.cpython-38.pyc │ └── network_trainer.cpython-39.pyc └── network_trainer.py ├── OARSegmentation ├── DataLoader │ ├── private_dataset.py │ └── provided_dataset.py ├── Models │ ├── Nets │ │ ├── base_blocks.py │ │ ├── base_blocks_ablation.py │ │ ├── blocks_MDUNet.py │ │ ├── blocks_MDUNet_ablation.py │ │ ├── convs.py │ │ └── utils.py │ └── Networks │ │ └── oar_transeg.py ├── OldModels │ ├── Nets │ │ ├── __pycache__ │ │ │ ├── base_blocks.cpython-310.pyc │ │ │ ├── base_blocks.cpython-37.pyc │ │ │ ├── base_blocks.cpython-38.pyc │ │ │ ├── base_blocks.cpython-39.pyc │ │ │ ├── blocks_MDUNet.cpython-310.pyc │ │ │ ├── blocks_MDUNet.cpython-37.pyc │ │ │ ├── blocks_MDUNet.cpython-38.pyc │ │ │ ├── blocks_MDUNet.cpython-39.pyc │ │ │ ├── convs.cpython-310.pyc │ │ │ ├── convs.cpython-37.pyc │ │ │ ├── convs.cpython-38.pyc │ │ │ ├── convs.cpython-39.pyc │ │ │ ├── utils.cpython-310.pyc │ │ │ ├── utils.cpython-37.pyc │ │ │ ├── utils.cpython-38.pyc │ │ │ └── utils.cpython-39.pyc │ │ ├── base_blocks.py │ │ ├── blocks_MDUNet.py │ │ ├── convs.py │ │ └── utils.py │ └── Networks │ │ └── oar_transeg.py ├── config.py ├── models │ └── nets │ │ └── __pycache__ │ │ ├── base_blocks.cpython-310.pyc │ │ ├── base_blocks.cpython-37.pyc │ │ ├── base_blocks.cpython-38.pyc │ │ ├── base_blocks.cpython-39.pyc │ │ ├── base_blocks_ablation.cpython-310.pyc │ │ ├── base_blocks_ablation.cpython-39.pyc │ │ ├── blocks_MDUNet.cpython-310.pyc │ │ ├── blocks_MDUNet.cpython-37.pyc │ │ ├── blocks_MDUNet.cpython-38.pyc │ │ ├── blocks_MDUNet.cpython-39.pyc │ │ ├── blocks_MDUNet_ablation.cpython-310.pyc │ │ ├── blocks_MDUNet_ablation.cpython-39.pyc │ │ ├── convs.cpython-310.pyc │ │ ├── convs.cpython-37.pyc │ │ ├── convs.cpython-38.pyc │ │ ├── convs.cpython-39.pyc │ │ ├── utils.cpython-310.pyc │ │ ├── utils.cpython-37.pyc │ │ ├── utils.cpython-38.pyc │ │ └── utils.cpython-39.pyc └── train_light_transeg.py ├── PretrainedModels ├── DosePrediction │ └── PATH_TO_PRETRANED_MODELS └── OARSegmentation │ └── PATH_TO_PRETRANED_MODELS ├── README.md ├── images ├── dosepyfer.png ├── method_highlevel.png └── transeg.png ├── private-data └── init.py ├── provided-data └── init.py └── requirements.txt /.idea/.gitignore: -------------------------------------------------------------------------------- 1 | # Default ignored files 2 | /shelf/ 3 | /workspace.xml 4 | -------------------------------------------------------------------------------- /.idea/code.iml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GhTara/Dose_Prediction/HEAD/.idea/code.iml -------------------------------------------------------------------------------- /.idea/inspectionProfiles/Project_Default.xml: -------------------------------------------------------------------------------- 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