├── Database-setup ├── Genome_DUSTer.sh ├── Genome_Grabber.py ├── README.md ├── create-kraken-DBs.sh └── seq-shuf.sh ├── FindFungi-v0.23.1 ├── CSV-to-Tree.py ├── CSV-to-WordCloudFormat.py ├── Consensus-CrossRef-Skewness_V2.py ├── FindFungi-0.23.1.sh ├── Fungal-Taxids.txt ├── Kraken32-to-Consensus.py ├── KrakenReduction.py ├── LICENSE ├── LowestCommonAncestor_V4.py ├── LowestCommonAncestor_V4.sh ├── PipelineSummary.txt ├── README.md ├── ReadNames-to-FASTA_V8.py └── Skewness-Calculator_V4.py ├── FindFungi-v0.23.2 ├── CSV-to-Tree.py ├── CSV-to-WordCloudFormat.py ├── Consensus-CrossRef-Skewness_V2.py ├── FindFungi-0.23.1.sh ├── FindFungi-0.23.2.sh ├── Fungal-Taxids.txt ├── Kraken32-to-Consensus.py ├── LowestCommonAncestor_V4.py ├── LowestCommonAncestor_V4.sh ├── PipelineSummary.txt ├── README.md ├── ReadNames-to-FASTA_V8.py └── Skewness-Calculator_V4.py ├── FindFungi-v0.23.3 ├── CSV-to-Tree.py ├── CSV-to-WordCloudFormat.py ├── Consensus-CrossRef-Skewness_V2.py ├── FindFungi-0.23.3.sh ├── 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