├── README.md ├── data ├── fiberstudy.csv ├── invitro.csv ├── raw_data │ ├── invitro_original.csv │ ├── studyA_original_abundance.csv │ ├── studyA_original_scfas.csv │ ├── studyB_original_abundance.csv │ ├── studyB_original_scfas.csv │ ├── studyC_original_abundances.csv │ ├── studyC_original_scfas.csv │ ├── studyD_original_abundance.csv │ └── studyD_original_scfas.csv ├── studyA.csv ├── studyA_SCFAs.csv ├── studyB.csv ├── studyB_SCFAs.csv ├── studyC.csv ├── studyC_SCFAs.csv ├── studyD.csv └── studyD_scfas.csv ├── media ├── DM38.csv ├── european_lowcarbon.csv ├── european_medium.csv ├── highfiber.csv ├── studyAmedium.csv ├── studyBmedium.csv ├── studyCmedium.csv └── studyDmedium.csv └── notebooks ├── fiber_study.ipynb ├── invitro.ipynb ├── studyA.ipynb ├── studyB.ipynb ├── studyC.ipynb ├── studyD.ipynb └── summarized_exvivos.ipynb /README.md: -------------------------------------------------------------------------------- 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