├── .github └── workflows │ └── python-package.yml ├── .gitignore ├── LICENSE ├── MANIFEST.in ├── README.md ├── cepy ├── __init__.py ├── ce.py ├── data │ ├── ce_group.json.gz │ ├── ce_subject1.json │ ├── ce_subject1.json.gz │ ├── ce_subject2.json.gz │ ├── generate_example_ce.py │ ├── sc_group_matrix.npz │ ├── sc_subject1_matrix.npz │ └── sc_subject2_matrix.npz ├── embed_align.py ├── parallel.py ├── setup.cfg └── utils.py ├── docs ├── Makefile ├── conf.py ├── docs_header.png ├── index.rst └── source │ ├── cepy.rst │ └── modules.rst ├── examples ├── README.md ├── ce_prediction.ipynb ├── ce_subjects_pipeline.ipynb ├── data │ ├── NKI_200_schaefer_sc_matrices.npz │ ├── NKI_200_schaefer_subjects_ce.npz │ ├── NKI_demographics.csv │ ├── group_sc_matrix.npz │ ├── schaefer200_yeo17_networks.csv │ ├── schaefer200_yeo17_nodeName.csv │ ├── sub1_fc_matrix.npz │ ├── sub1_sc_matrix.npz │ ├── sub2_fc_matrix.npz │ └── sub2_sc_matrix.npz ├── images │ ├── ce_alignment.png │ ├── ce_individuals.png │ ├── ce_workflow.png │ ├── ce_workflow_full.png │ ├── ce_workflow_width.png │ ├── p_q_parames.png │ ├── random_walks.png │ └── structure_to_function.png ├── inter_embedding_alignment.ipynb ├── intra_embedding_alignment.ipynb ├── learn_embedding.ipynb └── random_walks_generation.ipynb ├── requirements.txt └── setup.py /.github/workflows/python-package.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GidLev/cepy/HEAD/.github/workflows/python-package.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GidLev/cepy/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GidLev/cepy/HEAD/LICENSE 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