├── .gitignore ├── LICENSE ├── MANIFEST.in ├── README.rst ├── __init__.py ├── docs ├── Makefile ├── api.rst ├── auto_examples │ ├── auto_examples_jupyter.zip │ ├── auto_examples_python.zip │ └── index.rst ├── conf.py ├── gen_api │ ├── pymp2rage.examples │ ├── pymp2rage.mp2rage.MP2RAGE.correct_for_B1.examples │ ├── pymp2rage.mp2rage.MP2RAGE.examples │ ├── pymp2rage.mp2rage.MP2RAGE.fit_mask.examples │ ├── pymp2rage.mp2rage.MP2RAGE.fit_t1.examples │ ├── pymp2rage.mp2rage.MP2RAGE.fit_t1w_uni.examples │ ├── pymp2rage.mp2rage.MP2RAGE.from_bids.examples │ ├── pymp2rage.mp2rage.MP2RAGE.inv1_masked.examples │ ├── pymp2rage.mp2rage.MP2RAGE.inv2_masked.examples │ ├── pymp2rage.mp2rage.MP2RAGE.mask.examples │ ├── pymp2rage.mp2rage.MP2RAGE.plot_B1_effects.examples │ ├── pymp2rage.mp2rage.MP2RAGE.t1.examples │ ├── pymp2rage.mp2rage.MP2RAGE.t1_masked.examples │ ├── pymp2rage.mp2rage.MP2RAGE.t1w_uni.examples │ ├── pymp2rage.mp2rage.MP2RAGE.t1w_uni_masked.examples │ ├── pymp2rage.mp2rage.MP2RAGE.write_files.examples │ ├── pymp2rage.mp2rage.MP2RAGE_lookuptable.examples │ ├── pymp2rage.mp2rage.MPRAGEfunc_varyingTR.examples │ └── pymp2rage.mp2rage.examples ├── index.rst ├── make.bat ├── source │ ├── modules.rst │ └── pymp2rage.rst └── sphinxext │ ├── docscrape.py │ ├── docscrape_sphinx.py │ ├── github.py │ ├── math_dollar.py │ └── numpydoc.py ├── examples ├── B1 correction.ipynb ├── Load and save to BIDs dataset.ipynb ├── MP2RAGE and T1 fitting.ipynb ├── README.txt └── figures │ └── qmri.png ├── notebooks ├── B1 correction.ipynb ├── Load and save to BIDs dataset.ipynb ├── MP2RAGE and T1 fitting.ipynb ├── MPM with MEMP2RAGE.ipynb └── Test BIDS with pymp2rage.ipynb ├── pymp2rage ├── __init__.py ├── bids │ └── bep001.json ├── mp2rage.py ├── utils.py └── version.py └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Gilles86/pymp2rage/HEAD/.gitignore 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