├── .gitignore ├── CMakeLists.txt ├── CODEOWNERS ├── CONTRIBUTING.md ├── Dockerfile ├── LICENSE ├── README.md ├── cloud_build ├── cloudbuild.yaml ├── cpplint.sh ├── cpplint.yaml ├── deb │ ├── buildDeb.sh │ └── wsi2dcm │ │ └── DEBIAN │ │ └── control ├── debianBuild.sh ├── githubRelease.sh ├── githubRelease.yaml ├── rpm │ ├── SPECS │ │ └── wsi2dcm.spec │ └── buildRpm.sh └── wsi2dcm.rb ├── endToEnd ├── diff_img.py ├── endToEndTest.sh ├── endToEndTest.yaml ├── strip_pixel_data.py ├── test10ExpectedImage.bmp ├── test11ExpectedImage.bmp ├── test12ExpectedImage.bmp ├── test12ExpectedTags.json ├── test13ExpectedImage.bmp ├── test13ExpectedTags.json ├── test14ExpectedImage.bmp ├── test14ExpectedTags.json ├── test15ExpectedImage.bmp ├── test15ExpectedTags.json ├── test16ExpectedImage.bmp ├── test1ExpectedTags.json ├── test2ExpectedTags.json ├── test3ExpectedImage.bmp ├── test4ExpectedImage.bmp ├── test5ExpectedImage.bmp ├── test6ExpectedImage.bmp ├── test7ExpectedImage.bmp ├── test8ExpectedImage.bmp └── test9ExpectedImage.bmp ├── patches └── arith.h ├── src ├── abstractDcmFile.h ├── baseFilePyramidSource.h ├── compressor.h ├── dcmFileDraft.cpp ├── dcmFileDraft.h ├── dcmFilePyramidSource.cpp ├── dcmFilePyramidSource.h ├── dcmTags.cpp ├── dcmTags.h ├── dcmtkImgDataInfo.h ├── dcmtkUtils.cpp ├── dcmtkUtils.h ├── dicom_file_region_reader.cpp ├── dicom_file_region_reader.h ├── enums.h ├── frame.cpp ├── frame.h ├── geometryUtils.cpp ├── geometryUtils.h ├── imageFilePyramidSource.cpp ├── imageFilePyramidSource.h ├── jpeg2000Compression.cpp ├── jpeg2000Compression.h ├── jpegCompression.cpp ├── jpegCompression.h ├── jpegUtil.cpp ├── jpegUtil.h ├── main.cpp ├── nearestneighborframe.cpp ├── nearestneighborframe.h ├── opencvinterpolationframe.cpp ├── opencvinterpolationframe.h ├── openslideUtil.cpp ├── openslideUtil.h ├── rawCompression.cpp ├── rawCompression.h ├── tiffDirectory.cpp ├── tiffDirectory.h ├── tiffFile.cpp ├── tiffFile.h ├── tiffFrame.cpp ├── tiffFrame.h ├── tiffTile.cpp ├── tiffTile.h ├── wsiToDcm.cpp ├── wsiToDcm.h ├── zlibWrapper.cpp └── zlibWrapper.h └── tests ├── CMU-1-Small-Region.svs ├── bone.jpeg ├── dcmFileDraft.cpp ├── dcmFilePyramidSource.cpp ├── dcmTags.cpp ├── dcmtkUtils.cpp ├── dicom_file_region_reader.cpp ├── geometryUtils.cpp ├── imageFilePyramidSource.cpp ├── jpeg.dicom ├── jpeg2000.dicom ├── jpegUtil.cpp ├── nearestneighborframe.cpp ├── opencvinterpolationframe.cpp ├── raw.dicom ├── testDateTags.json ├── testUtils.cpp ├── testUtils.h ├── test_frame.cpp ├── test_frame.h ├── tests.cpp ├── tiffDirectory.cpp ├── tiffFile.cpp ├── tiffFrame.cpp ├── tiffTile.cpp ├── wsiToDcm.cpp └── zlibWrapper.cpp /.gitignore: -------------------------------------------------------------------------------- 1 | .DS_Store 2 | -------------------------------------------------------------------------------- /CMakeLists.txt: -------------------------------------------------------------------------------- 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