├── .devcontainer ├── python-cpu-devcontainer │ └── devcontainer.json ├── python-docs-devcontainer │ └── devcontainer.json └── python-gpu-devcontainer │ └── devcontainer.json ├── .github └── workflows │ └── docs.yml ├── .gitignore ├── LICENSE ├── README.rst ├── doc ├── Makefile ├── _static │ ├── CAMH_logo_purple.png │ ├── Ismail2025_Figure1.png │ ├── Ismail2025_SummaryFigure.png │ ├── KCNI_logo.png │ ├── UofT_logo.jpg │ ├── cards.css │ ├── css │ │ └── fix-sidebar.css │ ├── momi2023__Figure_2.PNG │ ├── momi2023__Figure_7.png │ ├── momi2025__SummaryFigure.png │ ├── sick_kids_logo.png │ ├── style.css │ ├── whobpyt_logo_feet.png │ ├── whobpyt_logo_feet_dark.png │ ├── whobpyt_logo_shire.png │ └── whobpyt_logo_shire_dark.png ├── _templates │ ├── autosummary │ │ ├── class.rst │ │ ├── class_no_inherited_members.rst │ │ ├── class_no_members.rst │ │ └── function.rst │ ├── avatars.html │ ├── copyright.html │ ├── homepage.html │ ├── layout.html │ └── sidebar-quicklinks.html ├── conf.py ├── documentation │ ├── about │ │ ├── architecture.md │ │ ├── background.md │ │ ├── cite.rst │ │ ├── cited.rst │ │ ├── datasets.rst │ │ ├── design_philosophy.rst │ │ ├── glossary.rst │ │ ├── implementation.rst │ │ ├── index.rst │ │ └── overview.rst │ ├── api │ │ ├── datatypes.rst │ │ ├── models.rst │ │ ├── optimization.rst │ │ ├── run.rst │ │ └── visualization.rst │ ├── development │ │ ├── contributing.rst │ │ ├── governance.rst │ │ ├── index.rst │ │ └── roadmap.rst │ ├── index.rst │ ├── science │ │ ├── brain_cognition │ │ │ └── index.rst │ │ ├── brain_dynamics │ │ │ └── index.rst │ │ ├── brain_stimulation │ │ │ └── index.rst │ │ └── index.rst │ └── usage │ │ ├── cookbook.rst │ │ ├── index.rst │ │ ├── installation.rst │ │ ├── running_in_codespaces.rst │ │ └── running_in_colab.rst └── index.rst ├── examples ├── README.md ├── README.txt ├── eg__ismail2025.py ├── eg__momi2023.py ├── eg__momi2025.py └── eg__tmseeg.py ├── requirements.txt ├── setup.py └── whobpyt ├── README.md ├── __init__.py ├── datasets ├── README.md ├── __init__.py ├── dataload.py ├── fetchers.py └── generators.py ├── datatypes ├── __init__.py ├── abstract_fitting.py ├── abstract_loss.py ├── abstract_measurement_model.py ├── abstract_neural_model.py ├── abstract_params.py ├── outputs.py ├── parameter.py └── timeseries.py ├── depr ├── __init__.py ├── data.py ├── euclidean_distance.py ├── fit.py ├── ismail2025 │ ├── __init__.py │ └── jansen_rit.py ├── models.py ├── momi2023 │ ├── __init__.py │ ├── bar_plot.py │ ├── jansen_rit.py │ └── pci.py ├── momi2025 │ ├── __init__.py │ └── jansen_rit.py ├── objective.py └── viz.py ├── functions ├── __init__.py ├── arg_type_check.py └── pytorch_funs.py ├── models ├── README.md ├── __init__.py └── jansen_rit │ ├── README.md │ ├── __init__.py │ └── jansen_rit.py ├── optimization ├── README.md ├── __init__.py ├── cost_FC.py ├── cost_Mean.py ├── cost_PSD.py ├── cost_TS.py ├── custom_cost_JR.py ├── custom_cost_LIN.py ├── custom_cost_RWW.py └── custom_cost_mmRWW2.py ├── run ├── README.md ├── __init__.py ├── batch_fitting.py ├── custom_fitting.py └── model_fitting.py └── visualization ├── README.md ├── __init__.py └── plotting.py /.devcontainer/python-cpu-devcontainer/devcontainer.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/.devcontainer/python-cpu-devcontainer/devcontainer.json -------------------------------------------------------------------------------- /.devcontainer/python-docs-devcontainer/devcontainer.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/.devcontainer/python-docs-devcontainer/devcontainer.json -------------------------------------------------------------------------------- /.devcontainer/python-gpu-devcontainer/devcontainer.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/.devcontainer/python-gpu-devcontainer/devcontainer.json -------------------------------------------------------------------------------- /.github/workflows/docs.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/.github/workflows/docs.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/LICENSE -------------------------------------------------------------------------------- /README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/README.rst -------------------------------------------------------------------------------- /doc/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/Makefile -------------------------------------------------------------------------------- /doc/_static/CAMH_logo_purple.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/CAMH_logo_purple.png -------------------------------------------------------------------------------- /doc/_static/Ismail2025_Figure1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/Ismail2025_Figure1.png -------------------------------------------------------------------------------- /doc/_static/Ismail2025_SummaryFigure.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/Ismail2025_SummaryFigure.png -------------------------------------------------------------------------------- /doc/_static/KCNI_logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/KCNI_logo.png -------------------------------------------------------------------------------- /doc/_static/UofT_logo.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/UofT_logo.jpg -------------------------------------------------------------------------------- /doc/_static/cards.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/cards.css -------------------------------------------------------------------------------- /doc/_static/css/fix-sidebar.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/css/fix-sidebar.css -------------------------------------------------------------------------------- /doc/_static/momi2023__Figure_2.PNG: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/momi2023__Figure_2.PNG -------------------------------------------------------------------------------- /doc/_static/momi2023__Figure_7.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/momi2023__Figure_7.png -------------------------------------------------------------------------------- /doc/_static/momi2025__SummaryFigure.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/momi2025__SummaryFigure.png -------------------------------------------------------------------------------- /doc/_static/sick_kids_logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/sick_kids_logo.png -------------------------------------------------------------------------------- /doc/_static/style.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/style.css -------------------------------------------------------------------------------- /doc/_static/whobpyt_logo_feet.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/whobpyt_logo_feet.png -------------------------------------------------------------------------------- /doc/_static/whobpyt_logo_feet_dark.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/whobpyt_logo_feet_dark.png -------------------------------------------------------------------------------- /doc/_static/whobpyt_logo_shire.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/whobpyt_logo_shire.png -------------------------------------------------------------------------------- /doc/_static/whobpyt_logo_shire_dark.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_static/whobpyt_logo_shire_dark.png -------------------------------------------------------------------------------- /doc/_templates/autosummary/class.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_templates/autosummary/class.rst -------------------------------------------------------------------------------- /doc/_templates/autosummary/class_no_inherited_members.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_templates/autosummary/class_no_inherited_members.rst -------------------------------------------------------------------------------- /doc/_templates/autosummary/class_no_members.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_templates/autosummary/class_no_members.rst -------------------------------------------------------------------------------- /doc/_templates/autosummary/function.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_templates/autosummary/function.rst -------------------------------------------------------------------------------- /doc/_templates/avatars.html: -------------------------------------------------------------------------------- 1 |

2 | -------------------------------------------------------------------------------- /doc/_templates/copyright.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_templates/copyright.html -------------------------------------------------------------------------------- /doc/_templates/homepage.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_templates/homepage.html -------------------------------------------------------------------------------- /doc/_templates/layout.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_templates/layout.html -------------------------------------------------------------------------------- /doc/_templates/sidebar-quicklinks.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/_templates/sidebar-quicklinks.html -------------------------------------------------------------------------------- /doc/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/conf.py -------------------------------------------------------------------------------- /doc/documentation/about/architecture.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/about/architecture.md -------------------------------------------------------------------------------- /doc/documentation/about/background.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/about/background.md -------------------------------------------------------------------------------- /doc/documentation/about/cite.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/about/cite.rst -------------------------------------------------------------------------------- /doc/documentation/about/cited.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/about/cited.rst -------------------------------------------------------------------------------- /doc/documentation/about/datasets.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/about/datasets.rst -------------------------------------------------------------------------------- /doc/documentation/about/design_philosophy.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/about/design_philosophy.rst -------------------------------------------------------------------------------- /doc/documentation/about/glossary.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/about/glossary.rst -------------------------------------------------------------------------------- /doc/documentation/about/implementation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/about/implementation.rst -------------------------------------------------------------------------------- /doc/documentation/about/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/about/index.rst -------------------------------------------------------------------------------- /doc/documentation/about/overview.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/about/overview.rst -------------------------------------------------------------------------------- /doc/documentation/api/datatypes.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/api/datatypes.rst -------------------------------------------------------------------------------- /doc/documentation/api/models.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/api/models.rst -------------------------------------------------------------------------------- /doc/documentation/api/optimization.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/api/optimization.rst -------------------------------------------------------------------------------- /doc/documentation/api/run.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/api/run.rst -------------------------------------------------------------------------------- /doc/documentation/api/visualization.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/api/visualization.rst -------------------------------------------------------------------------------- /doc/documentation/development/contributing.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/development/contributing.rst -------------------------------------------------------------------------------- /doc/documentation/development/governance.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/development/governance.rst -------------------------------------------------------------------------------- /doc/documentation/development/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/development/index.rst -------------------------------------------------------------------------------- /doc/documentation/development/roadmap.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/development/roadmap.rst -------------------------------------------------------------------------------- /doc/documentation/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/index.rst -------------------------------------------------------------------------------- /doc/documentation/science/brain_cognition/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/science/brain_cognition/index.rst -------------------------------------------------------------------------------- /doc/documentation/science/brain_dynamics/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/science/brain_dynamics/index.rst -------------------------------------------------------------------------------- /doc/documentation/science/brain_stimulation/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/science/brain_stimulation/index.rst -------------------------------------------------------------------------------- /doc/documentation/science/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/science/index.rst -------------------------------------------------------------------------------- /doc/documentation/usage/cookbook.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/usage/cookbook.rst -------------------------------------------------------------------------------- /doc/documentation/usage/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/usage/index.rst -------------------------------------------------------------------------------- /doc/documentation/usage/installation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/usage/installation.rst -------------------------------------------------------------------------------- /doc/documentation/usage/running_in_codespaces.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/usage/running_in_codespaces.rst -------------------------------------------------------------------------------- /doc/documentation/usage/running_in_colab.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/documentation/usage/running_in_colab.rst -------------------------------------------------------------------------------- /doc/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/doc/index.rst -------------------------------------------------------------------------------- /examples/README.md: -------------------------------------------------------------------------------- 1 | # Examples 2 | -------------------------------------------------------------------------------- /examples/README.txt: -------------------------------------------------------------------------------- 1 | # WhobPyt Examples 2 | -------------------------------------------------------------------------------- /examples/eg__ismail2025.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/examples/eg__ismail2025.py -------------------------------------------------------------------------------- /examples/eg__momi2023.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/examples/eg__momi2023.py -------------------------------------------------------------------------------- /examples/eg__momi2025.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/examples/eg__momi2025.py -------------------------------------------------------------------------------- /examples/eg__tmseeg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/examples/eg__tmseeg.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/requirements.txt -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/setup.py -------------------------------------------------------------------------------- /whobpyt/README.md: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /whobpyt/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/__init__.py -------------------------------------------------------------------------------- /whobpyt/datasets/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/datasets/README.md -------------------------------------------------------------------------------- /whobpyt/datasets/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/datasets/__init__.py -------------------------------------------------------------------------------- /whobpyt/datasets/dataload.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/datasets/dataload.py -------------------------------------------------------------------------------- /whobpyt/datasets/fetchers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/datasets/fetchers.py -------------------------------------------------------------------------------- /whobpyt/datasets/generators.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/datasets/generators.py -------------------------------------------------------------------------------- /whobpyt/datatypes/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/datatypes/__init__.py -------------------------------------------------------------------------------- /whobpyt/datatypes/abstract_fitting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/datatypes/abstract_fitting.py -------------------------------------------------------------------------------- /whobpyt/datatypes/abstract_loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/datatypes/abstract_loss.py -------------------------------------------------------------------------------- /whobpyt/datatypes/abstract_measurement_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/datatypes/abstract_measurement_model.py -------------------------------------------------------------------------------- /whobpyt/datatypes/abstract_neural_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/datatypes/abstract_neural_model.py -------------------------------------------------------------------------------- /whobpyt/datatypes/abstract_params.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/datatypes/abstract_params.py -------------------------------------------------------------------------------- /whobpyt/datatypes/outputs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/datatypes/outputs.py -------------------------------------------------------------------------------- /whobpyt/datatypes/parameter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/datatypes/parameter.py -------------------------------------------------------------------------------- /whobpyt/datatypes/timeseries.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/datatypes/timeseries.py -------------------------------------------------------------------------------- /whobpyt/depr/__init__.py: -------------------------------------------------------------------------------- 1 | # whobpyt init 2 | -------------------------------------------------------------------------------- /whobpyt/depr/data.py: -------------------------------------------------------------------------------- 1 | """ 2 | WhoBPyt Data Classes 3 | """ 4 | 5 | -------------------------------------------------------------------------------- /whobpyt/depr/euclidean_distance.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/depr/euclidean_distance.py -------------------------------------------------------------------------------- /whobpyt/depr/fit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/depr/fit.py -------------------------------------------------------------------------------- /whobpyt/depr/ismail2025/__init__.py: -------------------------------------------------------------------------------- 1 | # ... 2 | -------------------------------------------------------------------------------- /whobpyt/depr/ismail2025/jansen_rit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/depr/ismail2025/jansen_rit.py -------------------------------------------------------------------------------- /whobpyt/depr/models.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/depr/models.py -------------------------------------------------------------------------------- /whobpyt/depr/momi2023/__init__.py: -------------------------------------------------------------------------------- 1 | # ... 2 | -------------------------------------------------------------------------------- /whobpyt/depr/momi2023/bar_plot.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/depr/momi2023/bar_plot.py -------------------------------------------------------------------------------- /whobpyt/depr/momi2023/jansen_rit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/depr/momi2023/jansen_rit.py -------------------------------------------------------------------------------- /whobpyt/depr/momi2023/pci.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/depr/momi2023/pci.py -------------------------------------------------------------------------------- /whobpyt/depr/momi2025/__init__.py: -------------------------------------------------------------------------------- 1 | # .. 2 | -------------------------------------------------------------------------------- /whobpyt/depr/momi2025/jansen_rit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/depr/momi2025/jansen_rit.py -------------------------------------------------------------------------------- /whobpyt/depr/objective.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/depr/objective.py -------------------------------------------------------------------------------- /whobpyt/depr/viz.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/depr/viz.py -------------------------------------------------------------------------------- /whobpyt/functions/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/functions/__init__.py -------------------------------------------------------------------------------- /whobpyt/functions/arg_type_check.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/functions/arg_type_check.py -------------------------------------------------------------------------------- /whobpyt/functions/pytorch_funs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/functions/pytorch_funs.py -------------------------------------------------------------------------------- /whobpyt/models/README.md: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /whobpyt/models/__init__.py: -------------------------------------------------------------------------------- 1 | # ... 2 | -------------------------------------------------------------------------------- /whobpyt/models/jansen_rit/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/models/jansen_rit/README.md -------------------------------------------------------------------------------- /whobpyt/models/jansen_rit/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/models/jansen_rit/__init__.py -------------------------------------------------------------------------------- /whobpyt/models/jansen_rit/jansen_rit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/models/jansen_rit/jansen_rit.py -------------------------------------------------------------------------------- /whobpyt/optimization/README.md: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /whobpyt/optimization/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/optimization/__init__.py -------------------------------------------------------------------------------- /whobpyt/optimization/cost_FC.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/optimization/cost_FC.py -------------------------------------------------------------------------------- /whobpyt/optimization/cost_Mean.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/optimization/cost_Mean.py -------------------------------------------------------------------------------- /whobpyt/optimization/cost_PSD.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/optimization/cost_PSD.py -------------------------------------------------------------------------------- /whobpyt/optimization/cost_TS.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/optimization/cost_TS.py -------------------------------------------------------------------------------- /whobpyt/optimization/custom_cost_JR.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/optimization/custom_cost_JR.py -------------------------------------------------------------------------------- /whobpyt/optimization/custom_cost_LIN.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/optimization/custom_cost_LIN.py -------------------------------------------------------------------------------- /whobpyt/optimization/custom_cost_RWW.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/optimization/custom_cost_RWW.py -------------------------------------------------------------------------------- /whobpyt/optimization/custom_cost_mmRWW2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/optimization/custom_cost_mmRWW2.py -------------------------------------------------------------------------------- /whobpyt/run/README.md: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /whobpyt/run/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/run/__init__.py -------------------------------------------------------------------------------- /whobpyt/run/batch_fitting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/run/batch_fitting.py -------------------------------------------------------------------------------- /whobpyt/run/custom_fitting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/run/custom_fitting.py -------------------------------------------------------------------------------- /whobpyt/run/model_fitting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/run/model_fitting.py -------------------------------------------------------------------------------- /whobpyt/visualization/README.md: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /whobpyt/visualization/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/visualization/__init__.py -------------------------------------------------------------------------------- /whobpyt/visualization/plotting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GriffithsLab/whobpyt/HEAD/whobpyt/visualization/plotting.py --------------------------------------------------------------------------------