├── .gitignore ├── Install.md ├── LICENSE ├── README.md ├── Workflow_title.png ├── config.yml ├── curvature.py ├── curvature_calculation.py ├── distance_to_edge.py ├── docker ├── docker-compose.yml ├── dockerfile ├── entrypoint.sh ├── sm-down.sh └── sm-up.sh ├── environment.yml ├── example_data └── examples.tar.gz ├── filter_csvs.py ├── interdistance_orientation.py ├── intradistance_verticality.py ├── label_connected_components.py ├── measure_distances_orientations.py ├── mitochondria_statistics.py ├── morphometrics.Singularity ├── morphometrics_stats.py ├── mrc2xyz.py ├── old_scripts ├── IMM_OMM_distance.py ├── OMM_curvature.py ├── angles.py ├── areas.py ├── areas_custom.py ├── calculate_curvature_args.py ├── csv_quantifications.py ├── filled_mito.py ├── load_surface.py ├── mask_and_convert_ply.py ├── masked_curvature.py ├── masked_curvature_all.py ├── poisson_curvature.py ├── rescale_ply.py ├── stacked_bar.py ├── surface_to_surface.py └── weighted_histogram_from_csv.py ├── pip_requirements.txt ├── ply2vtp.py ├── quantifications_documentation.md ├── rescale_bad_plys.py ├── run_pycurv.py ├── segmentation_to_meshes.py ├── single_file_2d.py ├── single_file_histogram.py ├── thick_patch_selector.py ├── thickness_plots.py ├── thickness_scan.py ├── thickness_stats.py ├── thickness_subcompartment.py └── xyz2ply.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GrotjahnLab/surface_morphometrics/HEAD/.gitignore -------------------------------------------------------------------------------- /Install.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GrotjahnLab/surface_morphometrics/HEAD/Install.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 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