├── .gitignore ├── Contents.m ├── Examples ├── examples.m └── html │ ├── brainsection.png │ ├── demos.xml │ ├── examples.html │ ├── examples.png │ ├── examples_01.png │ ├── examples_02.png │ ├── examples_03.png │ ├── examples_04.png │ ├── examples_05.png │ ├── examples_06.png │ ├── examples_07.png │ ├── examples_08.png │ ├── examples_09.png │ ├── filepicker.png │ ├── harmonicmap.jpg │ ├── isolatedventricles3d.png │ ├── isolatetool.png │ ├── isosurface.png │ ├── mremesh.png │ ├── mreview.png │ ├── mreviewunwrap.png │ ├── segmentvolumes.png │ ├── segmentvolumesisolate.png │ ├── sliceplane.png │ └── unwrapdialog.png ├── Functions ├── Plot │ ├── license.txt │ ├── parseArgs.m │ └── subaxis.m ├── Unwrap │ ├── branch │ │ ├── BranchCuts_r1.m │ │ ├── FloodFill_r1.m │ │ ├── GoldsteinUnwrap2D_r1.m │ │ ├── PhaseResidues_r1.m │ │ └── license.txt │ ├── constantini │ │ └── cunwrap4D.m │ ├── nearestneighbor │ │ ├── fastUnwrap.m │ │ ├── nnUnwrap.m │ │ ├── nnspiralunwrap.m │ │ ├── spiralUnwrap.m │ │ └── unwrapFromCenter.m │ ├── quality │ │ ├── GuidedFloodFill_r1.m │ │ ├── PhaseDerivativeVariance_r1.m │ │ ├── QualityGuidedUnwrap2D_r1.m │ │ └── license.txt │ └── scikit-image │ │ └── 2dunwrap.c ├── bandpassfilter.m ├── bulkmotion.m ├── compareTissue.m ├── fixPhase.m ├── getFFT.m ├── getMRESinkus.m ├── getMRE_EPI.m ├── getMREimages.m ├── getUmap.m ├── lfe.m ├── lfe3D.m ├── lowpassfilter.m ├── lunii.m ├── mreslice2avi.m ├── mri2mat.m ├── nthHarmonic.m ├── nthHarmonic3D.m ├── probePhaseData.m ├── projectMagnitudeOntoWalls.m ├── scannerphase2rad.m ├── splitDimension.m ├── stepthru3d.m ├── unwrapAndNormalize.m ├── visualizeFlow.m ├── visualizeMotion.m └── visualizeMotionTriPlanar.m ├── GUIs ├── MREBulkMotionCalculator.fig ├── MREBulkMotionCalculator.m ├── MREView.fig ├── MREView.m ├── segmentVolumes.fig └── segmentVolumes.m ├── LICENSE.txt ├── NOTICE.txt ├── README.md ├── Scripts ├── MRE_sequence_simulation.m ├── prepareImages.sh └── prepareImagesT2.sh └── doc ├── Examples ├── examples.html └── index.html ├── Functions ├── Plot │ ├── index.html │ ├── parseArgs.html │ └── subaxis.html ├── Unwrap │ ├── branch │ │ ├── BranchCuts_r1.html │ │ ├── FloodFill_r1.html │ │ ├── GoldsteinUnwrap2D_r1.html │ │ ├── PhaseResidues_r1.html │ │ └── index.html │ ├── constantini │ │ ├── cunwrap4D.html │ │ └── index.html │ ├── nearestneighbor │ │ ├── fastUnwrap.html │ │ ├── index.html │ │ ├── nnUnwrap.html │ │ ├── nnspiralunwrap.html │ │ ├── spiralUnwrap.html │ │ └── unwrapFromCenter.html │ └── quality │ │ ├── GuidedFloodFill_r1.html │ │ ├── PhaseDerivativeVariance_r1.html │ │ ├── QualityGuidedUnwrap2D_r1.html │ │ └── index.html ├── bandpassfilter.html ├── bulkmotion.html ├── compareTissue.html ├── fixPhase.html ├── getFFT.html ├── getMRESinkus.html ├── getMRE_EPI.html ├── getMREimages.html ├── getUmap.html ├── index.html ├── lfe.html ├── lfe3D.html ├── lowpassfilter.html ├── lunii.html ├── mreslice2avi.html ├── mri2mat.html ├── nthHarmonic.html ├── nthHarmonic3D.html ├── probePhaseData.html ├── projectMagnitudeOntoWalls.html ├── scannerphase2rad.html ├── splitDimension.html ├── stepthru3d.html ├── unwrapAndNormalize.html ├── visualizeFlow.html ├── visualizeMotion.html └── visualizeMotionTriPlanar.html ├── GUIs ├── MREBulkMotionCalculator.html ├── MREView.html ├── index.html └── segmentVolumes.html ├── Scripts ├── MRE_sequence_simulation.html └── index.html ├── alpha.png ├── c++.png ├── c.png ├── demoicon.gif ├── down.png ├── doxysearch.php ├── fortran.png ├── hp.png ├── index.html ├── left.png ├── linux.png ├── m2html.css ├── matlabicon.gif ├── mex.png ├── pcode.png ├── right.png ├── sgi.png ├── simulinkicon.gif ├── solaris.png ├── up.png └── windows.png /.gitignore: -------------------------------------------------------------------------------- 1 | *.m~ 2 | *.avi 3 | *.fig~ 4 | -------------------------------------------------------------------------------- /Contents.m: -------------------------------------------------------------------------------- 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