├── README.Rmd ├── README.md ├── figures ├── f1.1-tree.pdf ├── f1.1-tree.png ├── f1_2-tree.pdf ├── f1_2-tree.png ├── f2_1-dendrogram.pdf ├── f2_1-dendrogram.png ├── f2_2-dendrogram-color.pdf ├── f2_2-dendrogram-color.png ├── f2_3-dendrogram-surv.pdf ├── f2_3-dendrogram-surv.png ├── f2_4-gheatmap-dendrogram.pdf ├── f2_4-gheatmap-dendrogram.png ├── f3-bootstrap.pdf ├── f3-bootstrap.png ├── f4_1-numeric-ancestral.pdf ├── f4_1-numeric-ancestral.png ├── f4_2-category-ancestral.pdf ├── f4_2-category-ancestral.png ├── f4_3-subplots.png ├── f4_3-subplots.tiff ├── f5-msa.pdf └── f5-msa.png ├── mskcc.txt ├── mskcc_surv.txt ├── taxa_info.csv └── tree_boots.nwk /README.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuangchuangYu/ggtree-current-protocols/HEAD/README.Rmd -------------------------------------------------------------------------------- /README.md: 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