├── Jtool.jl ├── README.md ├── SRR11799691.fastq.gz ├── Screen_Shot_2019-09-04_at_5-5094b6d1-b8d1-48fb-9454-18a2c8322384.23.34_PM.png ├── Script ├── tracer.py ├── trape.sh └── vdjpuzzle.sh ├── aha.TRB.CDR3.CATT.csv ├── catt ├── catt.jl ├── config.jl ├── corp-7cad705c-77eb-4983-94ec-b09b0f6f7583.png ├── prob.csv ├── reference.jl ├── resource ├── IG │ └── hs │ │ ├── .ipynb_checkpoints │ │ ├── IGHJ-checkpoint.fa │ │ └── IGHV-checkpoint.fa │ │ ├── IGHJ.fa │ │ ├── IGHJ.fa.1.bt2 │ │ ├── IGHJ.fa.2.bt2 │ │ ├── IGHJ.fa.3.bt2 │ │ ├── IGHJ.fa.4.bt2 │ │ ├── IGHJ.fa.amb │ │ ├── IGHJ.fa.ann │ │ ├── IGHJ.fa.bwt │ │ ├── IGHJ.fa.pac │ │ ├── IGHJ.fa.rev.1.bt2 │ │ ├── IGHJ.fa.rev.2.bt2 │ │ ├── IGHJ.fa.sa │ │ ├── IGHV-gai2-DNA.fa │ │ ├── IGHV-gai2-DNA.fa.amb │ │ ├── IGHV-gai2-DNA.fa.ann │ │ ├── IGHV-gai2-DNA.fa.bwt │ │ ├── IGHV-gai2-DNA.fa.pac │ │ ├── IGHV-gai2-DNA.fa.sa │ │ ├── IGHV.fa │ │ ├── IGHV.fa.1.bt2 │ │ ├── IGHV.fa.2.bt2 │ │ ├── IGHV.fa.3.bt2 │ │ ├── IGHV.fa.4.bt2 │ │ ├── IGHV.fa.amb │ │ ├── IGHV.fa.ann │ │ ├── IGHV.fa.bwt │ │ ├── IGHV.fa.pac │ │ ├── IGHV.fa.rev.1.bt2 │ │ ├── IGHV.fa.rev.2.bt2 │ │ └── IGHV.fa.sa └── TR │ ├── hs │ ├── TRA │ │ ├── TRAJ-gai-DNA.fa │ │ ├── TRAJ-gai-DNA.fa.amb │ │ ├── TRAJ-gai-DNA.fa.ann │ │ ├── TRAJ-gai-DNA.fa.bwt │ │ ├── TRAJ-gai-DNA.fa.pac │ │ ├── TRAJ-gai-DNA.fa.sa │ │ ├── TRAJ-gai2-DNA.fa │ │ ├── TRAJ-gai2-DNA.fa.amb │ │ ├── TRAJ-gai2-DNA.fa.ann │ │ ├── TRAJ-gai2-DNA.fa.bwt │ │ ├── TRAJ-gai2-DNA.fa.pac │ │ ├── TRAJ-gai2-DNA.fa.sa │ │ ├── TRAV-CDR1-back.fa │ │ ├── TRAV-CDR1-back.fa.amb │ │ ├── TRAV-CDR1-back.fa.ann │ │ ├── TRAV-CDR1-back.fa.bwt │ │ ├── TRAV-CDR1-back.fa.pac │ │ ├── TRAV-CDR1-back.fa.sa │ │ ├── TRAV-CDR1-front.fa │ │ ├── TRAV-CDR1-front.fa.amb │ │ ├── TRAV-CDR1-front.fa.ann │ │ ├── TRAV-CDR1-front.fa.bwt │ │ ├── TRAV-CDR1-front.fa.pac │ │ ├── TRAV-CDR1-front.fa.sa │ │ ├── TRAV-CDR2-back.fa │ │ ├── TRAV-CDR2-back.fa.amb │ │ ├── TRAV-CDR2-back.fa.ann │ │ ├── TRAV-CDR2-back.fa.bwt │ │ ├── TRAV-CDR2-back.fa.pac │ │ ├── TRAV-CDR2-back.fa.sa │ │ ├── TRAV-CDR2-front.fa │ │ ├── TRAV-CDR2-front.fa.amb │ │ ├── TRAV-CDR2-front.fa.ann │ │ ├── TRAV-CDR2-front.fa.bwt │ │ ├── TRAV-CDR2-front.fa.pac │ │ ├── TRAV-CDR2-front.fa.sa │ │ ├── TRAV-gai-DNA.fa │ │ ├── TRAV-gai-DNA.fa.amb │ │ ├── TRAV-gai-DNA.fa.ann │ │ ├── TRAV-gai-DNA.fa.bwt │ │ ├── TRAV-gai-DNA.fa.pac │ │ ├── TRAV-gai-DNA.fa.sa │ │ ├── TRAV-gai2-DNA.fa │ │ ├── TRAV-gai2-DNA.fa.amb │ │ ├── TRAV-gai2-DNA.fa.ann │ │ ├── TRAV-gai2-DNA.fa.bwt │ │ ├── TRAV-gai2-DNA.fa.pac │ │ ├── TRAV-gai2-DNA.fa.sa │ │ ├── TRAV-gai3-DNA.fa │ │ ├── TRAV-gai3-DNA.fa.amb │ │ ├── TRAV-gai3-DNA.fa.ann │ │ ├── TRAV-gai3-DNA.fa.bwt │ │ ├── TRAV-gai3-DNA.fa.pac │ │ ├── TRAV-gai3-DNA.fa.sa │ │ ├── TRAV-imgt-AAP.fa │ │ ├── TRAV-imgt-AAP.fa.amb │ │ ├── TRAV-imgt-AAP.fa.ann │ │ ├── TRAV-imgt-AAP.fa.bwt │ │ ├── TRAV-imgt-AAP.fa.pac │ │ ├── TRAV-imgt-AAP.fa.sa │ │ ├── TRAV-imgt-DNA.fa │ │ ├── TRAV-imgt-DNA.fa.amb │ │ ├── TRAV-imgt-DNA.fa.ann │ │ ├── TRAV-imgt-DNA.fa.bwt │ │ ├── TRAV-imgt-DNA.fa.pac │ │ ├── TRAV-imgt-DNA.fa.sa │ │ └── comm.sh │ ├── TRB │ │ ├── TRBJ-gai3-DNA.fa │ │ ├── TRBJ-gai3-DNA.fa.amb │ │ ├── TRBJ-gai3-DNA.fa.ann │ │ ├── TRBJ-gai3-DNA.fa.bwt │ │ ├── TRBJ-gai3-DNA.fa.fai │ │ ├── TRBJ-gai3-DNA.fa.pac │ │ ├── TRBJ-gai3-DNA.fa.sa │ │ ├── TRBV-gai5-DNA.fa │ │ ├── TRBV-gai5-DNA.fa.amb │ │ ├── TRBV-gai5-DNA.fa.ann │ │ ├── TRBV-gai5-DNA.fa.bwt │ │ ├── TRBV-gai5-DNA.fa.pac │ │ ├── TRBV-gai5-DNA.fa.sa │ │ ├── TRBV-gai6-DNA.fa │ │ ├── TRBV-gai6-DNA.fa.amb │ │ ├── TRBV-gai6-DNA.fa.ann │ │ ├── TRBV-gai6-DNA.fa.bwt │ │ ├── TRBV-gai6-DNA.fa.fai │ │ ├── TRBV-gai6-DNA.fa.pac │ │ └── TRBV-gai6-DNA.fa.sa │ ├── TRD │ │ └── SRR11799691.sra │ ├── TRDJ.fa │ ├── TRDJ.fa.amb │ ├── TRDJ.fa.ann │ ├── TRDJ.fa.bwt │ ├── TRDJ.fa.fai │ ├── TRDJ.fa.pac │ ├── TRDJ.fa.sa │ ├── TRDV.fa │ ├── TRDV.fa.amb │ ├── TRDV.fa.ann │ ├── TRDV.fa.bwt │ ├── TRDV.fa.fai │ ├── TRDV.fa.pac │ ├── TRDV.fa.sa │ ├── TRGJ.fa │ ├── TRGJ.fa.amb │ ├── TRGJ.fa.ann │ ├── TRGJ.fa.bwt │ ├── TRGJ.fa.fai │ ├── TRGJ.fa.pac │ ├── TRGJ.fa.sa │ ├── TRGV.fa │ ├── TRGV.fa.amb │ ├── TRGV.fa.ann │ ├── TRGV.fa.bwt │ ├── TRGV.fa.fai │ ├── TRGV.fa.pac │ └── TRGV.fa.sa │ ├── ms │ ├── .ipynb_checkpoints │ │ └── TRBV-CDR3-checkpoint.fa │ ├── TRBJ-CDR3.fa │ ├── TRBJ-CDR3.fa.amb │ ├── TRBJ-CDR3.fa.ann │ ├── TRBJ-CDR3.fa.bwt │ ├── TRBJ-CDR3.fa.pac │ ├── TRBJ-CDR3.fa.sa │ ├── TRBV-CDR3.fa │ ├── TRBV-CDR3.fa.amb │ ├── TRBV-CDR3.fa.ann │ ├── TRBV-CDR3.fa.bwt │ ├── TRBV-CDR3.fa.pac │ └── TRBV-CDR3.fa.sa │ └── pig │ ├── TRBJ-CDR3-AA.fa │ ├── TRBJ-CDR3-DNA.fa │ ├── TRBJ-gai1-DNA.fa │ ├── TRBJ-gai1-DNA.fa.amb │ ├── TRBJ-gai1-DNA.fa.ann │ ├── TRBJ-gai1-DNA.fa.bwt │ ├── TRBJ-gai1-DNA.fa.pac │ ├── TRBJ-gai1-DNA.fa.sa │ ├── TRBV-CDR3-AA.fa │ ├── TRBV-CDR3-DNA.fa │ ├── TRBV-gai1-DNA.fa │ ├── TRBV-gai1-DNA.fa.amb │ ├── TRBV-gai1-DNA.fa.ann │ ├── TRBV-gai1-DNA.fa.bwt │ ├── TRBV-gai1-DNA.fa.pac │ └── TRBV-gai1-DNA.fa.sa ├── test.TRD.CDR3.CATT.csv ├── test.TRG.CDR3.CATT.csv └── testSample.fq /SRR11799691.fastq.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/SRR11799691.fastq.gz -------------------------------------------------------------------------------- /Screen_Shot_2019-09-04_at_5-5094b6d1-b8d1-48fb-9454-18a2c8322384.23.34_PM.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/Screen_Shot_2019-09-04_at_5-5094b6d1-b8d1-48fb-9454-18a2c8322384.23.34_PM.png -------------------------------------------------------------------------------- /Script/tracer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/Script/tracer.py -------------------------------------------------------------------------------- /Script/trape.sh: -------------------------------------------------------------------------------- 1 | # Map command 2 | # tophat 3 | 4 | 5 | source activate trapes 6 | python trapes.py -genome hg38 -path $1 -bam accepted_hits.bam -unmapped unmapped.bam -output $2 -sumF -------------------------------------------------------------------------------- /Script/vdjpuzzle.sh: -------------------------------------------------------------------------------- 1 | source activate vdjpuzzle 2 | 3 | tmpfolder=$(openssl rand -hex 10)_vdjpuzzle 4 | mkdir -p $tmpfolder/$3 5 | ln -s $1 $tmpfolder/$3 6 | ln -s $2 $tmpfolder/$3 7 | bowtie_index="Homo_sapiens/Ensembl/GRCh37/Sequence/Bowtie2Index/genome" 8 | gtf_path = "Homo_sapiens/Ensembl/GRCh37/Annotation/Genes/genes.gtf" 9 | vdjpuzzle $tmpfolder --bowtie-index=$bowtie_index --gtf=$gtf_path --CPU=$4 --THR=$4 10 | 11 | -------------------------------------------------------------------------------- /catt: -------------------------------------------------------------------------------- 1 | #!python3 2 | import argparse 3 | import os 4 | import sys 5 | 6 | def CommandLineParser(): 7 | parser = argparse.ArgumentParser( 8 | prog="CATT", 9 | description="What the program does", 10 | epilog='Text at the bottom of help' 11 | ) 12 | group = parser.add_mutually_exclusive_group() 13 | group.add_argument('-f', '--file', action='append', default=[], help="Input file path") 14 | group.add_argument("--f1", action='append', default=[], help='Input file path with #1 mates') 15 | parser.add_argument("--f2", action='append', default=[], help='Input file path with #2 mates') 16 | parser.add_argument('-o', '--output', action='append', default=[], required=True, help='Output path, prefix shoulde be included.') 17 | parser.add_argument('-t', '--thread', default=4, type=int, help='Thread number used by CATT') 18 | parser.add_argument('-k', '--kmer', default=10000, type=int) 19 | parser.add_argument("--chain", default="TRB", choices=['TRB', 'TRA', 'IGH', 'IGL', 'TRD', 'TRG']) 20 | parser.add_argument("--region", '-r', default="CDR3", choices=['CDR1', 'CDR2', 'CDR3']) 21 | parser.add_argument("--bowt", type=int, default=8, help="Thread used for bowtie align.") 22 | parser.add_argument("--sc", action="store_true", default=False) 23 | parser.add_argument("--debug", action='store_true', default=False) 24 | parser.add_argument("--bowsc", default=12, type=int) 25 | parser.add_argument('--penality',default=1, type=int) 26 | parser.add_argument("--bam", action="store_true", dest='bam', default=False) 27 | parser.add_argument("--species", default='hs', choices=['hs', 'ms', 'pig']) 28 | parser.add_argument('--proV', dest='proV', action='append', default=[], help="processed file pathV ") 29 | parser.add_argument('--proJ', dest='proJ', action='append', default=[], help="processed file pathJ ") 30 | return parser.parse_args() 31 | 32 | 33 | def convert( arg ): 34 | 35 | if arg is None: 36 | return "nothing" 37 | 38 | if type(arg) == str: 39 | return '"' + arg + '"' 40 | elif type(arg) == int: 41 | return arg 42 | elif type(arg) == bool: 43 | return "true" if arg else "false" 44 | else: 45 | return arg 46 | 47 | if __name__ == '__main__': 48 | 49 | abp = os.path.abspath(sys.argv[0])[0:-5] 50 | args = CommandLineParser() 51 | 52 | #Index check 53 | if not os.path.exists("./resource/TR/hs/%sV.fa.bwt" % getattr(args, 'chain')): 54 | os.system("bwa index ./resource/TR/hs/%sV.fa" % getattr(args, 'chain')) 55 | os.system("bwa index ./resource/TR/hs/%sJ.fa" % getattr(args, 'chain')) 56 | 57 | with open("%s/config.jl" % abp, "w") as handle: 58 | handle.write("parsed_args = Dict(\n") 59 | for arg in vars(args): 60 | line = "{} => {},\n".format(convert(arg), convert((getattr(args, arg)))) 61 | handle.write(line.replace('\'', "\"")) 62 | handle.write(")") 63 | 64 | os.system('export JULIA_NUM_THREADS=%d && julia %s/catt.jl' % (getattr(args, "thread"), abp) ) 65 | 66 | 67 | -------------------------------------------------------------------------------- /config.jl: -------------------------------------------------------------------------------- 1 | parsed_args = Dict( 2 | "file" => ["SRR11799691.fastq.gz"], 3 | "f1" => [], 4 | "f2" => [], 5 | "output" => ["test"], 6 | "thread" => 4, 7 | "kmer" => 10000, 8 | "chain" => "TRD", 9 | "region" => "CDR3", 10 | "bowt" => 8, 11 | "sc" => false, 12 | "debug" => false, 13 | "bowsc" => 12, 14 | "penality" => 1, 15 | "bam" => false, 16 | "species" => "hs", 17 | "proV" => [], 18 | "proJ" => [], 19 | ) -------------------------------------------------------------------------------- /corp-7cad705c-77eb-4983-94ec-b09b0f6f7583.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/corp-7cad705c-77eb-4983-94ec-b09b0f6f7583.png -------------------------------------------------------------------------------- /prob.csv: -------------------------------------------------------------------------------- 1 | AA,-4,-3,-2,1,2,3,8 2 | A,0.0006526540544512303,0.14867113583416536,8.644424562267952e-05,0.8826908364777427,0.10403564960689479,0.004823588905745517,-1.0 3 | B,0.0,0.0,0.0,0.0,0.0,0.0,-1.0 4 | C,4.322212281133976e-06,0.0,4.322212281133976e-06,0.0,0.0001599218544019571,0.0002463661000246366,-1.0 5 | D,0.000177210703526493,1.7288849124535904e-05,1.7288849124535904e-05,0.0,9.941088246608144e-05,0.003561502919654396,-1.0 6 | E,0.4526307145049122,4.754433509247373e-05,0.0,4.322212281133976e-06,0.0001253441561528853,0.005195299161923039,-1.0 7 | F,8.644424562267952e-06,0.0,0.3941166046429204,0.0,7.347760877927759e-05,0.0009595311264117426,-1.0 8 | G,0.11653548752393425,3.457769824907181e-05,0.0,0.0,0.0027921491336125484,0.025846829441181173,-1.0 9 | H,8.644424562267952e-06,1.2966636843401926e-05,0.13852258139806278,0.0,3.889991053020578e-05,0.0011108085562514317,-1.0 10 | I,0.010667219909838651,0.02267864783910997,4.322212281133976e-06,0.0,0.0064357740866084895,0.006591373728729313,-1.0 11 | J,0.0,0.0,0.0,0.0,0.0,0.0,-1.0 12 | K,0.04986104087516154,8.644424562267952e-06,0.0,0.0,0.00014695521755855517,0.01036034283787814,-1.0 13 | L,0.0001426330052774212,0.17330774583662903,8.644424562267952e-06,0.0,0.0004970544123304072,0.007658960162169405,-1.0 14 | M,1.2966636843401926e-05,0.0,0.0,0.0,5.6188759654741683e-05,0.0017937180966705998,-1.0 15 | N,2.161106140566988e-05,0.0,8.644424562267952e-06,0.0,0.00027662158599257446,0.0070624948673729164,-1.0 16 | O,0.0,0.0,0.0,0.0,0.0,0.0,-1.0 17 | P,0.13828053751031927,2.5933273686803852e-05,0.0,0.0,0.00036738804389638795,0.00924088985706444,-1.0 18 | Q,0.00040196574214545973,0.5389928380942501,0.0,0.0,5.6188759654741683e-05,0.00424009024779243,-1.0 19 | R,0.00043654344039453156,3.889991053020578e-05,0.0,0.0,0.004062879544265937,0.13766246115411712,-1.0 20 | S,0.0005618875965474168,2.161106140566988e-05,0.0,0.1173048413099761,0.8442923025721485,0.7409049848074238,-1.0 21 | T,0.21372907508979397,3.457769824907181e-05,0.1317669636026504,0.0,0.013584713199604085,0.027826402665940535,-1.0 22 | U,0.0,0.0,0.0,0.0,0.0,0.0,-1.0 23 | V,0.015810652524388083,4.322212281133976e-06,0.00011237751930948337,0.0,0.011034607953735039,0.0025371386090256437,-1.0 24 | W,3.0255485967937828e-05,0.0,0.0,0.0,0.011786672890652352,0.0013917523545251402,0.0 25 | X,0.0,0.0,0.0,0.0,0.0,0.0,-1.0 26 | Y,2.5933273686803852e-05,0.11610326629582085,0.3353518064686229,0.0,7.779982106041156e-05,0.0009854644000985464,-1.0 27 | Z,0.0,0.0,0.0,0.0,0.0,0.0,-1.0 28 | -------------------------------------------------------------------------------- /reference.jl: -------------------------------------------------------------------------------- 1 | const ref_prefix = PROGRAM_FILE[1:end-7] * "resource" 2 | const bwa_path = "bwa" 3 | const samtools_path = "/Users/kroaity/Documents/bin/samtools" 4 | 5 | const refg = Dict( 6 | 7 | "hs" => Dict( 8 | 9 | "TRA" => Dict( 10 | "CDR3" => Dict( 11 | "vregion" => "$ref_prefix/TR/hs/TRA/TRAV-gai3-DNA.fa", 12 | "jregion" => "$ref_prefix/TR/hs/TRA/TRAJ-gai2-DNA.fa", 13 | "cmotif" => "[EHILMSTV]{1}Y[FILY]{1}C[AGILV]{1}", 14 | "fmotif" => "(LA|YI|FI|II|LY|LM|PT|TI|LV|ST|VT|LT|LI|LQ|MR|VI|FV|FQ|LF|LL|FE|FT|LS|LN|FY)F((ARG)|(G[A-Z]{1}G))", 15 | "coffset" => 3, 16 | "foffset" => 0, 17 | "innerC" => "place_holder", 18 | "innerF" => "place_holder", 19 | ) 20 | ), 21 | 22 | "TRB" => Dict( 23 | "CDR3" => Dict( 24 | "vregion" => "$ref_prefix/TR/hs/TRB/TRBV-gai6-DNA.fa", 25 | "jregion" => "$ref_prefix/TR/hs/TRB/TRBJ-gai3-DNA.fa", 26 | "cmotif" => "(LR|YF|YI|YL|YQ|YR)C(A|S|T|V|G|R|P|D)", 27 | "fmotif" => "[FTYH]{1}FG[ADENPQS]{1}G", 28 | "coffset" => 2, 29 | "foffset" => 1, 30 | "innerC" => "(CAS|CSA|CAW|CAT|CSV|CAI|CAR)", 31 | "innerF" => "place_holder", 32 | "Dregion" => [ 33 | ("TRBD1*01", "gggacagggggc"), 34 | ("TRBD2*01", "gggactagcggggggg"), 35 | ("TRBD2*02", "gggactagcgggaggg") 36 | ] 37 | ) 38 | ), 39 | 40 | "TRG" => Dict( 41 | "CDR3" => Dict( 42 | "vregion" => "$ref_prefix/TR/hs/TRGV.fa", 43 | "jregion" => "$ref_prefix/TR/hs/TRGJ.fa", 44 | "cmotif" => "(YY|YH)C(A|T)", 45 | "fmotif" => "([LV]{1}FG[SP]{1}G)|(IFAEG)|(TFAKG)", 46 | "coffset" => 2, 47 | "foffset" => 1, 48 | "innerC" => "(CAT|CAW|CTT|CAL|CAC|CAA)", 49 | "innerF" => "(KLF)|(KVF)|(KIF)|(KTF)", 50 | ) 51 | ), 52 | 53 | "TRD" => Dict( 54 | "CDR3" => Dict( 55 | "vregion" => "$ref_prefix/TR/hs/TRDV.fa", 56 | "jregion" => "$ref_prefix/TR/hs/TRDJ.fa", 57 | "cmotif" => "(YF|YL|YY)C(A|S)", 58 | "fmotif" => "[I|F]FG[K|T]G", 59 | "coffset" => 2, 60 | "foffset" => 1, 61 | "innerC" => "place_holder", 62 | "innerF" => "place_holder", 63 | "Dregion" => [ 64 | ("TRDD1*01", "gaaatagt"), 65 | ("TRDD2*01", "ccttcctac"), 66 | ("TRDD3*01", "actgggggatacg") 67 | ] 68 | ) 69 | ), 70 | 71 | "IGH" => Dict( 72 | "CDR3" => Dict( 73 | "vregion" => "$ref_prefix/IG/hs/IGHV-gai2-DNA.fa", 74 | "cmotif" => "(LYY|TAV|YVA|TYY|MYY|VYD|AFN|AYY|EYY|THY|VYY|LYH|VDY)C", 75 | "jregion" => "$ref_prefix/IG/hs/IGHJ.fa", 76 | "fmotif" => "[VLHYPIS]{1}WG[QR]{1}G", 77 | "coffset" => 3, 78 | "foffset" => 1, 79 | "innerC" => "place_holder", 80 | "innerF" => "place_holder", 81 | ), 82 | ), 83 | ), 84 | 85 | "ms" => Dict( 86 | "TRB" => Dict( 87 | "CDR3" => Dict( 88 | "vregion" => "$ref_prefix/TR/ms/TRBV-CDR3.fa", 89 | "jregion" => "$ref_prefix/TR/ms/TRBJ-CDR3.fa", 90 | "cmotif" => "[AGPST]{1}C(LHV|FYI|LYF|LFV|FYV|LYL|MYL|LYT|TCY|LYV|FYL|FYT|LYM|LYI|FYM)", 91 | "fmotif" => "(SF|FF|YF|HF|TF|DH|LF)G[ADMREKLSPH]{1}G", 92 | "innerC" => "place_holder", 93 | "innerF" => "place_holder", 94 | "coffset" => 0, 95 | "foffset" => 1, 96 | ), 97 | 98 | # "CDR2" => Dict(), 99 | ), 100 | # "TRA" => Dict(), 101 | # "IGH" => Dict(), 102 | # "IGK" => Dict() 103 | ), 104 | 105 | "pig" => Dict( 106 | "TRB" => Dict( 107 | "CDR3" => Dict( 108 | "vregion" => "$ref_prefix/TR/pig/TRBV-gai1-DNA.fa", 109 | "cmotif" => "(FF|FL|LF|YF|YL|YV)C", 110 | "coffset" => 2, 111 | "innerC" => "place_holder", 112 | 113 | "jregion" => "$ref_prefix/TR/pig/TRBJ-gai1-DNA.fa", 114 | "innerF" => "(LH|LI|LT|LY|QH|QI|QY|RY|VF|YN)F", 115 | "fmotif" => "[HILTYFM]{1}FG[ADEGLPS]{1}G", 116 | "foffset" => 1, 117 | 118 | "Dregion" => [ 119 | ("TRBD1*01", "gggacagggggggc"), 120 | ("TRBD2*01", "ggagctatgggggggg"), 121 | ("TRBD3*01", "ggagctatggggggggg") 122 | ] 123 | ) 124 | ) 125 | ) 126 | ) 127 | -------------------------------------------------------------------------------- /resource/IG/hs/.ipynb_checkpoints/IGHJ-checkpoint.fa: -------------------------------------------------------------------------------- 1 | >J00256|IGHJ1*01|Homo sapiens|F|J-REGION|723..774|52 nt|1| | | | |52+0=52| | | 2 | gctgaatacttccagcactggggccagggcaccctggtcaccgtc 3 | >J00256|IGHJ2*01|Homo sapiens|F|J-REGION|932..984|53 nt|2| | | | |53+0=53| | | 4 | tactggtacttcgatctctggggccgtggcaccctggtcactgtc 5 | >J00256|IGHJ3*01|Homo sapiens|F|J-REGION|1537..1586|50 nt|2| | | | |50+0=50| | | 6 | gatgcttttgatgtctggggccaagggacaatggtcaccgtctct 7 | >X86355|IGHJ3*02|Homo sapiens|F|J-REGION|1107..1156|50 nt|2| | | | |50+0=50| | | 8 | gatgcttttgatatctggggccaagggacaatggtcaccgtctct 9 | >J00256|IGHJ4*01|Homo sapiens|F|J-REGION|1912..1959|48 nt|3| | | | |48+0=48| | | 10 | tactttgactactggggccaaggaaccctggtcaccgtctcctca 11 | >X86355|IGHJ4*02|Homo sapiens|F|J-REGION|1480..1527|48 nt|3| | | | |48+0=48| | | 12 | tactttgactactggggccagggaaccctggtcaccgtctcctca 13 | >M25625|IGHJ4*03|Homo sapiens|F|J-REGION|446..493|48 nt|3| | | | |48+0=48| | | 14 | tactttgactactggggccaagggaccctggtcaccgtctcctca 15 | >J00256|IGHJ5*01|Homo sapiens|F|J-REGION|2354..2404|51 nt|3| | | | |51+0=51| | | 16 | aactggttcgactcctggggccaaggaaccctggtcaccgtctcc 17 | >X86355|IGHJ5*02|Homo sapiens|F|J-REGION|1878..1928|51 nt|3| | | | |51+0=51| | | 18 | aactggttcgacccctggggccagggaaccctggtcaccgtctcc 19 | -------------------------------------------------------------------------------- /resource/IG/hs/IGHJ.fa: -------------------------------------------------------------------------------- 1 | >IGHJ1*01 J00256|IGHJ1*01|Homo sapiens|F|J-REGION|723..774|52 nt|1| | | | |52+0=52| | | 2 | gctgaatacttccagcactggggccagggcaccctggtcaccgtc 3 | >IGHJ2*01 J00256|IGHJ2*01|Homo sapiens|F|J-REGION|932..984|53 nt|2| | | | |53+0=53| | | 4 | tactggtacttcgatctctggggccgtggcaccctggtcactgtc 5 | >IGHJ3*01 J00256|IGHJ3*01|Homo sapiens|F|J-REGION|1537..1586|50 nt|2| | | | |50+0=50| | | 6 | gatgcttttgatgtctggggccaagggacaatggtcaccgtctct 7 | >IGHJ3*02 X86355|IGHJ3*02|Homo sapiens|F|J-REGION|1107..1156|50 nt|2| | | | |50+0=50| | | 8 | gatgcttttgatatctggggccaagggacaatggtcaccgtctct 9 | >IGHJ4*01 J00256|IGHJ4*01|Homo sapiens|F|J-REGION|1912..1959|48 nt|3| | | | |48+0=48| | | 10 | tactttgactactggggccaaggaaccctggtcaccgtctcctca 11 | >IGHJ4*02 X86355|IGHJ4*02|Homo sapiens|F|J-REGION|1480..1527|48 nt|3| | | | |48+0=48| | | 12 | tactttgactactggggccagggaaccctggtcaccgtctcctca 13 | >IGHJ4*03 M25625|IGHJ4*03|Homo sapiens|F|J-REGION|446..493|48 nt|3| | | | |48+0=48| | | 14 | tactttgactactggggccaagggaccctggtcaccgtctcctca 15 | >IGHJ5*01 J00256|IGHJ5*01|Homo sapiens|F|J-REGION|2354..2404|51 nt|3| | | | |51+0=51| | | 16 | aactggttcgactcctggggccaaggaaccctggtcaccgtctcc 17 | >IGHJ5*02 X86355|IGHJ5*02|Homo sapiens|F|J-REGION|1878..1928|51 nt|3| | | | |51+0=51| | | 18 | aactggttcgacccctggggccagggaaccctggtcaccgtctcc 19 | -------------------------------------------------------------------------------- /resource/IG/hs/IGHJ.fa.1.bt2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/IG/hs/IGHJ.fa.1.bt2 -------------------------------------------------------------------------------- /resource/IG/hs/IGHJ.fa.2.bt2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/IG/hs/IGHJ.fa.2.bt2 -------------------------------------------------------------------------------- /resource/IG/hs/IGHJ.fa.3.bt2: -------------------------------------------------------------------------------- 1 |  --------- -------------------------------------------------------------------------------- /resource/IG/hs/IGHJ.fa.4.bt2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/IG/hs/IGHJ.fa.4.bt2 -------------------------------------------------------------------------------- /resource/IG/hs/IGHJ.fa.amb: -------------------------------------------------------------------------------- 1 | 405 9 0 2 | -------------------------------------------------------------------------------- /resource/IG/hs/IGHJ.fa.ann: -------------------------------------------------------------------------------- 1 | 405 9 11 2 | 0 IGHJ1*01 J00256|IGHJ1*01|Homo sapiens|F|J-REGION|723..774|52 nt|1| | | | |52+0=52| | | 3 | 0 45 0 4 | 0 IGHJ2*01 J00256|IGHJ2*01|Homo sapiens|F|J-REGION|932..984|53 nt|2| | | | |53+0=53| | | 5 | 45 45 0 6 | 0 IGHJ3*01 J00256|IGHJ3*01|Homo sapiens|F|J-REGION|1537..1586|50 nt|2| | | | |50+0=50| | | 7 | 90 45 0 8 | 0 IGHJ3*02 X86355|IGHJ3*02|Homo sapiens|F|J-REGION|1107..1156|50 nt|2| | | | |50+0=50| | | 9 | 135 45 0 10 | 0 IGHJ4*01 J00256|IGHJ4*01|Homo sapiens|F|J-REGION|1912..1959|48 nt|3| | | | |48+0=48| | | 11 | 180 45 0 12 | 0 IGHJ4*02 X86355|IGHJ4*02|Homo sapiens|F|J-REGION|1480..1527|48 nt|3| | | | |48+0=48| | | 13 | 225 45 0 14 | 0 IGHJ4*03 M25625|IGHJ4*03|Homo sapiens|F|J-REGION|446..493|48 nt|3| | | | |48+0=48| | | 15 | 270 45 0 16 | 0 IGHJ5*01 J00256|IGHJ5*01|Homo sapiens|F|J-REGION|2354..2404|51 nt|3| | | | |51+0=51| | | 17 | 315 45 0 18 | 0 IGHJ5*02 X86355|IGHJ5*02|Homo sapiens|F|J-REGION|1878..1928|51 nt|3| | | | |51+0=51| | | 19 | 360 45 0 20 | -------------------------------------------------------------------------------- /resource/IG/hs/IGHJ.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/IG/hs/IGHJ.fa.bwt -------------------------------------------------------------------------------- /resource/IG/hs/IGHJ.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/IG/hs/IGHJ.fa.pac -------------------------------------------------------------------------------- /resource/IG/hs/IGHJ.fa.rev.1.bt2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/IG/hs/IGHJ.fa.rev.1.bt2 -------------------------------------------------------------------------------- /resource/IG/hs/IGHJ.fa.rev.2.bt2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/IG/hs/IGHJ.fa.rev.2.bt2 -------------------------------------------------------------------------------- /resource/IG/hs/IGHJ.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/IG/hs/IGHJ.fa.sa -------------------------------------------------------------------------------- /resource/IG/hs/IGHV-gai2-DNA.fa.amb: -------------------------------------------------------------------------------- 1 | 101050 376 7 2 | 1618 1 n 3 | 12975 1 n 4 | 13092 1 n 5 | 76686 1 n 6 | 86252 3 n 7 | 90795 1 n 8 | 90797 3 n 9 | -------------------------------------------------------------------------------- /resource/IG/hs/IGHV-gai2-DNA.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/IG/hs/IGHV-gai2-DNA.fa.bwt -------------------------------------------------------------------------------- /resource/IG/hs/IGHV-gai2-DNA.fa.pac: -------------------------------------------------------------------------------- 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https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/IG/hs/IGHV.fa.2.bt2 -------------------------------------------------------------------------------- /resource/IG/hs/IGHV.fa.3.bt2: -------------------------------------------------------------------------------- 1 |  ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ -------------------------------------------------------------------------------- /resource/IG/hs/IGHV.fa.4.bt2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/IG/hs/IGHV.fa.4.bt2 -------------------------------------------------------------------------------- /resource/IG/hs/IGHV.fa.amb: -------------------------------------------------------------------------------- 1 | 12960 288 0 2 | -------------------------------------------------------------------------------- /resource/IG/hs/IGHV.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/IG/hs/IGHV.fa.bwt -------------------------------------------------------------------------------- /resource/IG/hs/IGHV.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/IG/hs/IGHV.fa.pac -------------------------------------------------------------------------------- /resource/IG/hs/IGHV.fa.rev.1.bt2: 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-------------------------------------------------------------------------------- 1 | >M94081|TRAJ10*01|Homo sapiens|F|J-REGION|73699..73762|64 nt|1| | | | |64+0=64| | | 2 | aggaaacaaactcacctttgggacaggcactcagctaaaagtggaactca 3 | >M94081|TRAJ11*01|Homo sapiens|F|J-REGION|72706..72765|60 nt|3| | | | |60+0=60| | | 4 | atacagcaccctcacctttgggaaggggactatgcttctagtctctccag 5 | >X02885|TRAJ12*01|Homo sapiens|F|J-REGION|53..112|60 nt|3| | | | |60+0=60| | | 6 | cagctataaattgatcttcgggagtgggaccagactgctggtcaggcctg 7 | >M94081|TRAJ13*01|Homo sapiens|F|J-REGION|71280..71342|63 nt|3| | | | |63+0=63| | | 8 | ttaccagaaagttacctttggaattggaacaaagctccaagtcatcccaa 9 | >AC023226|TRAJ13*02|Homo sapiens|F|J-REGION|51292..51354|63 nt|3| | | | |63+0=63| |rev-compl| 10 | ttaccagaaagttacctttggaactggaacaaagctccaagtcatcccaa 11 | >M94081|TRAJ14*01|Homo sapiens|F|J-REGION|70532..70583|52 nt|1| | | | |52+0=52| | | 12 | ttatagcacattcatctttgggagtgggacaagattatcagtaaaacctg 13 | >X05775|TRAJ15*01|Homo sapiens|F|J-REGION|80..139|60 nt|3| | | | |60+0=60| | | 14 | aggaactgctctgatctttgggaagggaaccaccttatcagtgagttcca 15 | >M94081|TRAJ15*02|Homo sapiens|F|J-REGION|69836..69895|60 nt|3| | | | |60+0=60| | | 16 | aggaactgctctgatctttgggaagggaacccacctatcagtgagttcca 17 | >M94081|TRAJ16*01|Homo sapiens|F|J-REGION|68743..68802|60 nt|3| | | | |60+0=60| | | 18 | tggccagaagctgctctttgcaaggggaaccatgttaaaggtggatctta 19 | >X05773|TRAJ17*01|Homo sapiens|F|J-REGION|173..235|63 nt|3| | | | |63+0=63| | | 20 | aggcaacaagctaacttttggaggaggaaccagggtgctagttaaaccaa 21 | >M94081|TRAJ18*01|Homo sapiens|F|J-REGION|65876..65941|66 nt|3| | | | |66+0=66| | | 22 | cctggggaggctatactttggaagaggaactcagttgactgtctggcctg 23 | >M94081|TRAJ20*01|Homo sapiens|F|J-REGION|64552..64608|57 nt|3| | | | |57+0=57| | | 24 | cgactacaagctcagctttggagccggaaccacagtaactgtaagagcaa 25 | >M94081|TRAJ21*01|Homo sapiens|F|J-REGION|63829..63883|55 nt|1| | | | |55+0=55| | | 26 | cttcaacaaattttactttggatctgggaccaaactcaatgtaaaaccaa 27 | >X02886|TRAJ22*01|Homo sapiens|F|J-REGION|405..467|63 nt|3| | | | |63+0=63| | | 28 | tgcaaggcaactgacctttggatctgggacacaattgactgttttacctg 29 | >M94081|TRAJ23*01|Homo sapiens|F|J-REGION|60650..60712|63 nt|3| | | | |63+0=63| | | 30 | gggaggaaagcttatcttcggacagggaacggagttatctgtgaaaccca 31 | >X58763|TRAJ23*02|Homo sapiens|(F)|J-REGION|61..123|63 nt|3| | | | |63+0=63| | | 32 | gggaggaaagcttatcttcggacagggaacggagctatctgtgaaaccca 33 | >X02887|TRAJ24*01|Homo sapiens|F|J-REGION|124..186|63 nt|3| | | | |63+0=63| | | 34 | ctgggggaaattcgagtttggagcagggacccaggttgtggtcaccccag 35 | >M94081|TRAJ24*02|Homo sapiens|F|J-REGION|60203..60265|63 nt|3| | | | |63+0=63| | | 36 | ctgggggaaattgcagtttggagcagggacccaggttgtggtcaccccag 37 | >M94081|TRAJ26*01|Homo sapiens|F|J-REGION|58680..58739|60 nt|3| | | | |60+0=60| | | 38 | tggtcagaattttgtctttggtcccggaaccagattgtccgtgctgccct 39 | >M94081|TRAJ27*01|Homo sapiens|F|J-REGION|56507..56565|59 nt|2| | | | |59+0=59| | | 40 | tgcaggcaaatcaacctttggggatgggactacgctcactgtgaagccaa 41 | >M94081|TRAJ28*01|Homo sapiens|F|J-REGION|55857..55922|66 nt|3| | | | |66+0=66| | | 42 | gagttaccaactcactttcgggaaggggaccaaactctcggtcataccaa 43 | >M94081|TRAJ29*01|Homo sapiens|F|J-REGION|54177..54236|60 nt|3| | | | |60+0=60| | | 44 | aaacacacctcttgtctttggaaagggcacaagactttctgtgattgcaa 45 | >X02884|TRAJ3*01|Homo sapiens|F|J-REGION|504..565|62 nt|2| | | | |62+0=62| | | 46 | tgcttccaagataatctttggatcagggaccagactcagcatccggccaa 47 | >M94081|TRAJ30*01|Homo sapiens|F|J-REGION|53090..53146|57 nt|3| | | | |57+0=57| | | 48 | agatgacaagatcatctttggaaaagggacacgacttcatattctcccca 49 | >M14905|TRAJ31*01|Homo sapiens|F|J-REGION|77..132|56 nt|2| | | | |56+0=56| | | 50 | caatgccagactcatgtttggagatggaactcagctggtggtgaagccca 51 | >M94081|TRAJ32*01|Homo sapiens|F|J-REGION|49581..49646|66 nt|3| | | | |66+0=66| | | 52 | tacaaacaagctcatctttggaactggcactctgcttgctgtccagccaa 53 | >AF532854|TRAJ32*02|Homo sapiens|(F)|J-REGION|240..299,a|60 nt|3| |1| | |60+0=60|partial in 5'| | 54 | tacaaacaagctcatctttggaactggcactctgcttgctgtccagccaa 55 | >M94081|TRAJ33*01|Homo sapiens|F|J-REGION|48843..48899|57 nt|3| | | | |57+0=57| | | 56 | caactatcagttaatctggggcgctgggaccaagctaattataaagccag 57 | >M35622|TRAJ34*01|Homo sapiens|F|J-REGION|30..87|58 nt|1| | | | |58+0=58| | | 58 | caccgacaagctcatctttgggactgggaccagattacaagtctttccaa 59 | >M94081|TRAJ36*01|Homo sapiens|F|J-REGION|45353..45411|59 nt|2| | | | |59+0=59| | | 60 | ggcaaacaacctcttctttgggactggaacgagactcaccgttattccct 61 | >M94081|TRAJ37*01|Homo sapiens|F|J-REGION|43993..44054|62 nt|2| | | | |62+0=62| | | 62 | cacaggcaaactaatctttgggcaagggacaactttacaagtaaaaccag 63 | >AJ007774|TRAJ37*02|Homo sapiens|(F)|J-REGION|336..397,g|62 nt|2| |1| | |62+0=62| | | 64 | cacaggcaaactaatctttgggcaagggacaactttacaagtaaaaccag 65 | >M94081|TRAJ38*01|Homo sapiens|F|J-REGION|42473..42534|62 nt|2| | | | |62+0=62| | | 66 | caaccgtaagctgatttggggattgggaacaagcctggcagtaaatccga 67 | >M94081|TRAJ39*01|Homo sapiens|F|J-REGION|41843..41905|63 nt|3| | | | |63+0=63| | | 68 | aggcaacatgctcacctttggagggggaacaaggttaatggtcaaacccc 69 | >M94081|TRAJ4*01|Homo sapiens|F|J-REGION|82396..82458|63 nt|3| | | | |63+0=63| | | 70 | ctacaataagctgatttttggagcagggaccaggctggctgtacacccat 71 | >M35620|TRAJ40*01|Homo sapiens|F|J-REGION|35..95|61 nt|1| | | | |61+0=61| | | 72 | aacctacaaatacatctttggaacaggcaccaggctgaaggttttagcaa 73 | >M94081|TRAJ41*01|Homo sapiens|F|J-REGION|37900..37961|62 nt|2| | | | |62+0=62| | | 74 | cgggtatgcactcaacttcggcaaaggcacctcgctgttggtcacacccc 75 | >M94081|TRAJ42*01|Homo sapiens|F|J-REGION|37130..37195|66 nt|3| | | | |66+0=66| | | 76 | ccaaggaaatctcatctttggaaaaggcactaaactctctgttaaaccaa 77 | >M94081|TRAJ43*01|Homo sapiens|F|J-REGION|36154..36207|54 nt|3| | | | |54+0=54| | | 78 | taacaatgacatgcgctttggagcagggaccagactgacagtaaaaccaa 79 | >M35619|TRAJ44*01|Homo sapiens|F|J-REGION|30..92|63 nt|3| | | | |63+0=63| | | 80 | tgccagtaaactcacctttgggactggaacaagacttcaggtcacgctcg 81 | >M94081|TRAJ45*01|Homo sapiens|F|J-REGION|34169..34234|66 nt|3| | | | |66+0=66| | | 82 | tgctgacggactcacctttggcaaagggactcatctaatcatccagccct 83 | >M94081|TRAJ46*01|Homo sapiens|F|J-REGION|33647..33709|63 nt|3| | | | |63+0=63| | | 84 | cggagacaagctgacttttgggaccgggactcgtttagcagttaggccca 85 | >M94081|TRAJ47*01|Homo sapiens|F|J-REGION|33096..33152|57 nt|3| | | | |57+0=57| | | 86 | tggaaacaaactggtctttggcgcaggaaccattctgagagtcaagtcct 87 | >AF033825|TRAJ47*02|Homo sapiens|(F)|J-REGION|312..368,t|57 nt|3| |1| | |57+0=57| | | 88 | tggaaacaagctggtctttggcgcaggaaccattctgagagtcaagtcct 89 | >M94081|TRAJ48*01|Homo sapiens|F|J-REGION|30737..30799|63 nt|3| | | | |63+0=63| | | 90 | aaatgagaaattaacctttgggactggaacaagactcaccatcataccca 91 | >M94081|TRAJ49*01|Homo sapiens|F|J-REGION|29734..29789|56 nt|2| | | | |56+0=56| | | 92 | cggtaaccagttctattttgggacagggacaagtttgacggtcattccaa 93 | >M94081|TRAJ5*01|Homo sapiens|F|J-REGION|80444..80503|60 nt|3| | | | |60+0=60| | | 94 | caggagagcacttacttttgggagtggaacaagactccaagtgcaaccaa 95 | >M94081|TRAJ50*01|Homo sapiens|F|J-REGION|28839..28898|60 nt|3| | | | |60+0=60| | | 96 | ctacgacaaggtgatatttgggccagggacaagcttatcagtcattccaa 97 | >M94081|TRAJ52*01|Homo sapiens|F|J-REGION|26474..26542|69 nt|3| | | | |69+0=69| | | 98 | ctatggaaagctgacatttggacaagggaccatcttgactgtccatccaa 99 | >M94081|TRAJ53*01|Homo sapiens|F|J-REGION|23251..23316|66 nt|3| | | | |66+0=66| | | 100 | caactataaactgacatttggaaaaggaactctcttaaccgtgaatccaa 101 | >M94081|TRAJ54*01|Homo sapiens|F|J-REGION|22534..22593|60 nt|3| | | | |60+0=60| | | 102 | agcccagaagctggtatttggccaaggaaccaggctgactatcaacccaa 103 | >M94081|TRAJ56*01|Homo sapiens|F|J-REGION|19768..19829|62 nt|2| | | | |62+0=62| | | 104 | caatagtaagctgacatttggaaaaggaataactctgagtgttagaccag 105 | >M94081|TRAJ57*01|Homo sapiens|F|J-REGION|19119..19181|63 nt|3| | | | |63+0=63| | | 106 | atctgaaaagctggtctttggaaagggaacgaaactgacagtaaacccat 107 | >M16747|TRAJ6*01|Homo sapiens|F|J-REGION|31..92|62 nt|2| | | | |62+0=62| | | 108 | aagctacatacctacatttggaagaggaaccagccttattgttcatccgt 109 | >M94081|TRAJ7*01|Homo sapiens|F|J-REGION|77821..77879|59 nt|2| | | | |59+0=59| | | 110 | gaacaacagactcgcttttgggaaggggaaccaagtggtggtcataccaa 111 | >M94081|TRAJ8*01|Homo sapiens|F|J-REGION|76346..76405|60 nt|3| | | | |60+0=60| | | 112 | ctttcagaaacttgtatttggaactggcacccgacttctggtcagtccaa 113 | >M94081|TRAJ9*01|Homo sapiens|F|J-REGION|75756..75816|61 nt|1| | | | |61+0=61| | | 114 | aggcttcaaaactatctttggagcaggaacaagactatttgttaaagcaa 115 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAJ-gai-DNA.fa.amb: -------------------------------------------------------------------------------- 1 | 2850 57 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAJ-gai-DNA.fa.ann: -------------------------------------------------------------------------------- 1 | 2850 57 11 2 | 0 M94081|TRAJ10*01|Homo sapiens|F|J-REGION|73699..73762|64 nt|1| | | | |64+0=64| | | 3 | 0 50 0 4 | 0 M94081|TRAJ11*01|Homo sapiens|F|J-REGION|72706..72765|60 nt|3| | | | |60+0=60| | | 5 | 50 50 0 6 | 0 X02885|TRAJ12*01|Homo sapiens|F|J-REGION|53..112|60 nt|3| | | | |60+0=60| | | 7 | 100 50 0 8 | 0 M94081|TRAJ13*01|Homo sapiens|F|J-REGION|71280..71342|63 nt|3| | | | |63+0=63| | | 9 | 150 50 0 10 | 0 AC023226|TRAJ13*02|Homo sapiens|F|J-REGION|51292..51354|63 nt|3| | | | |63+0=63| |rev-compl| 11 | 200 50 0 12 | 0 M94081|TRAJ14*01|Homo sapiens|F|J-REGION|70532..70583|52 nt|1| | | | |52+0=52| | | 13 | 250 50 0 14 | 0 X05775|TRAJ15*01|Homo sapiens|F|J-REGION|80..139|60 nt|3| | | | |60+0=60| | | 15 | 300 50 0 16 | 0 M94081|TRAJ15*02|Homo sapiens|F|J-REGION|69836..69895|60 nt|3| | | | |60+0=60| | | 17 | 350 50 0 18 | 0 M94081|TRAJ16*01|Homo sapiens|F|J-REGION|68743..68802|60 nt|3| | | | |60+0=60| | | 19 | 400 50 0 20 | 0 X05773|TRAJ17*01|Homo sapiens|F|J-REGION|173..235|63 nt|3| | | | |63+0=63| | | 21 | 450 50 0 22 | 0 M94081|TRAJ18*01|Homo sapiens|F|J-REGION|65876..65941|66 nt|3| | | | |66+0=66| | | 23 | 500 50 0 24 | 0 M94081|TRAJ20*01|Homo sapiens|F|J-REGION|64552..64608|57 nt|3| | | | |57+0=57| | | 25 | 550 50 0 26 | 0 M94081|TRAJ21*01|Homo sapiens|F|J-REGION|63829..63883|55 nt|1| | | | |55+0=55| | | 27 | 600 50 0 28 | 0 X02886|TRAJ22*01|Homo sapiens|F|J-REGION|405..467|63 nt|3| | | | |63+0=63| | | 29 | 650 50 0 30 | 0 M94081|TRAJ23*01|Homo sapiens|F|J-REGION|60650..60712|63 nt|3| | | | |63+0=63| | | 31 | 700 50 0 32 | 0 X58763|TRAJ23*02|Homo sapiens|(F)|J-REGION|61..123|63 nt|3| | | | |63+0=63| | | 33 | 750 50 0 34 | 0 X02887|TRAJ24*01|Homo sapiens|F|J-REGION|124..186|63 nt|3| | | | |63+0=63| | | 35 | 800 50 0 36 | 0 M94081|TRAJ24*02|Homo sapiens|F|J-REGION|60203..60265|63 nt|3| | | | |63+0=63| | | 37 | 850 50 0 38 | 0 M94081|TRAJ26*01|Homo sapiens|F|J-REGION|58680..58739|60 nt|3| | | | |60+0=60| | | 39 | 900 50 0 40 | 0 M94081|TRAJ27*01|Homo sapiens|F|J-REGION|56507..56565|59 nt|2| | | | |59+0=59| | | 41 | 950 50 0 42 | 0 M94081|TRAJ28*01|Homo sapiens|F|J-REGION|55857..55922|66 nt|3| | | | |66+0=66| | | 43 | 1000 50 0 44 | 0 M94081|TRAJ29*01|Homo sapiens|F|J-REGION|54177..54236|60 nt|3| | | | |60+0=60| | | 45 | 1050 50 0 46 | 0 X02884|TRAJ3*01|Homo sapiens|F|J-REGION|504..565|62 nt|2| | | | |62+0=62| | | 47 | 1100 50 0 48 | 0 M94081|TRAJ30*01|Homo sapiens|F|J-REGION|53090..53146|57 nt|3| | | | |57+0=57| | | 49 | 1150 50 0 50 | 0 M14905|TRAJ31*01|Homo sapiens|F|J-REGION|77..132|56 nt|2| | | | |56+0=56| | | 51 | 1200 50 0 52 | 0 M94081|TRAJ32*01|Homo sapiens|F|J-REGION|49581..49646|66 nt|3| | | | |66+0=66| | | 53 | 1250 50 0 54 | 0 AF532854|TRAJ32*02|Homo sapiens|(F)|J-REGION|240..299,a|60 nt|3| |1| | |60+0=60|partial in 5'| | 55 | 1300 50 0 56 | 0 M94081|TRAJ33*01|Homo sapiens|F|J-REGION|48843..48899|57 nt|3| | | | |57+0=57| | | 57 | 1350 50 0 58 | 0 M35622|TRAJ34*01|Homo sapiens|F|J-REGION|30..87|58 nt|1| | | | |58+0=58| | | 59 | 1400 50 0 60 | 0 M94081|TRAJ36*01|Homo sapiens|F|J-REGION|45353..45411|59 nt|2| | | | |59+0=59| | | 61 | 1450 50 0 62 | 0 M94081|TRAJ37*01|Homo sapiens|F|J-REGION|43993..44054|62 nt|2| | | | |62+0=62| | | 63 | 1500 50 0 64 | 0 AJ007774|TRAJ37*02|Homo sapiens|(F)|J-REGION|336..397,g|62 nt|2| |1| | |62+0=62| | | 65 | 1550 50 0 66 | 0 M94081|TRAJ38*01|Homo sapiens|F|J-REGION|42473..42534|62 nt|2| | | | |62+0=62| | | 67 | 1600 50 0 68 | 0 M94081|TRAJ39*01|Homo sapiens|F|J-REGION|41843..41905|63 nt|3| | | | |63+0=63| | | 69 | 1650 50 0 70 | 0 M94081|TRAJ4*01|Homo sapiens|F|J-REGION|82396..82458|63 nt|3| | | | |63+0=63| | | 71 | 1700 50 0 72 | 0 M35620|TRAJ40*01|Homo sapiens|F|J-REGION|35..95|61 nt|1| | | | |61+0=61| | | 73 | 1750 50 0 74 | 0 M94081|TRAJ41*01|Homo sapiens|F|J-REGION|37900..37961|62 nt|2| | | | |62+0=62| | | 75 | 1800 50 0 76 | 0 M94081|TRAJ42*01|Homo sapiens|F|J-REGION|37130..37195|66 nt|3| | | | |66+0=66| | | 77 | 1850 50 0 78 | 0 M94081|TRAJ43*01|Homo sapiens|F|J-REGION|36154..36207|54 nt|3| | | | |54+0=54| | | 79 | 1900 50 0 80 | 0 M35619|TRAJ44*01|Homo sapiens|F|J-REGION|30..92|63 nt|3| | | | |63+0=63| | | 81 | 1950 50 0 82 | 0 M94081|TRAJ45*01|Homo sapiens|F|J-REGION|34169..34234|66 nt|3| | | | |66+0=66| | | 83 | 2000 50 0 84 | 0 M94081|TRAJ46*01|Homo sapiens|F|J-REGION|33647..33709|63 nt|3| | | | |63+0=63| | | 85 | 2050 50 0 86 | 0 M94081|TRAJ47*01|Homo sapiens|F|J-REGION|33096..33152|57 nt|3| | | | |57+0=57| | | 87 | 2100 50 0 88 | 0 AF033825|TRAJ47*02|Homo sapiens|(F)|J-REGION|312..368,t|57 nt|3| |1| | |57+0=57| | | 89 | 2150 50 0 90 | 0 M94081|TRAJ48*01|Homo sapiens|F|J-REGION|30737..30799|63 nt|3| | | | |63+0=63| | | 91 | 2200 50 0 92 | 0 M94081|TRAJ49*01|Homo sapiens|F|J-REGION|29734..29789|56 nt|2| | | | |56+0=56| | | 93 | 2250 50 0 94 | 0 M94081|TRAJ5*01|Homo sapiens|F|J-REGION|80444..80503|60 nt|3| | | | |60+0=60| | | 95 | 2300 50 0 96 | 0 M94081|TRAJ50*01|Homo sapiens|F|J-REGION|28839..28898|60 nt|3| | | | |60+0=60| | | 97 | 2350 50 0 98 | 0 M94081|TRAJ52*01|Homo sapiens|F|J-REGION|26474..26542|69 nt|3| | | | |69+0=69| | | 99 | 2400 50 0 100 | 0 M94081|TRAJ53*01|Homo sapiens|F|J-REGION|23251..23316|66 nt|3| | | | |66+0=66| | | 101 | 2450 50 0 102 | 0 M94081|TRAJ54*01|Homo sapiens|F|J-REGION|22534..22593|60 nt|3| | | | |60+0=60| | | 103 | 2500 50 0 104 | 0 M94081|TRAJ56*01|Homo sapiens|F|J-REGION|19768..19829|62 nt|2| | | | |62+0=62| | | 105 | 2550 50 0 106 | 0 M94081|TRAJ57*01|Homo sapiens|F|J-REGION|19119..19181|63 nt|3| | | | |63+0=63| | | 107 | 2600 50 0 108 | 0 M16747|TRAJ6*01|Homo sapiens|F|J-REGION|31..92|62 nt|2| | | | |62+0=62| | | 109 | 2650 50 0 110 | 0 M94081|TRAJ7*01|Homo sapiens|F|J-REGION|77821..77879|59 nt|2| | | | |59+0=59| | | 111 | 2700 50 0 112 | 0 M94081|TRAJ8*01|Homo sapiens|F|J-REGION|76346..76405|60 nt|3| | | | |60+0=60| | | 113 | 2750 50 0 114 | 0 M94081|TRAJ9*01|Homo sapiens|F|J-REGION|75756..75816|61 nt|1| | | | |61+0=61| | | 115 | 2800 50 0 116 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAJ-gai-DNA.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAJ-gai-DNA.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAJ-gai-DNA.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAJ-gai-DNA.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAJ-gai-DNA.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAJ-gai-DNA.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAJ-gai2-DNA.fa: -------------------------------------------------------------------------------- 1 | >X02884|TRAJ1*01|Homo sapiens|ORF|J-REGION|2363..2424|62 nt|2| | | | |62+0=62| | | 2 | tttggcaaaggaaccagagtttccacttct 3 | >M94081|TRAJ10*01|Homo sapiens|F|J-REGION|73699..73762|64 nt|1| | | | |64+0=64| | | 4 | tttgggacaggcactcagctaaaagtggaa 5 | >M94081|TRAJ11*01|Homo sapiens|F|J-REGION|72706..72765|60 nt|3| | | | |60+0=60| | | 6 | tttgggaaggggactatgcttctagtctct 7 | >X02885|TRAJ12*01|Homo sapiens|F|J-REGION|53..112|60 nt|3| | | | |60+0=60| | | 8 | ttcgggagtgggaccagactgctggtcagg 9 | >M94081|TRAJ13*01|Homo sapiens|F|J-REGION|71280..71342|63 nt|3| | | | |63+0=63| | | 10 | tttggaattggaacaaagctccaagtcatc 11 | >AB258131|TRAJ13*02|Homo sapiens|F|J-REGION|101..163|63 nt|3| | || |63+0=63| | | 12 | tttggaactggaacaaagctccaagtcatc 13 | >M94081|TRAJ14*01|Homo sapiens|F|J-REGION|70532..70583|52 nt|1| | | | |52+0=52| | | 14 | tttgggagtgggacaagattatcagtaaaa 15 | >X05775|TRAJ15*01|Homo sapiens|F|J-REGION|80..139|60 nt|3| | | | |60+0=60| | | 16 | tttgggaagggaaccaccttatcagtgagt 17 | >M94081|TRAJ15*02|Homo sapiens|F|J-REGION|69836..69895|60 nt|3| | | | |60+0=60| | | 18 | tttgggaagggaacccacctatcagtgagt 19 | >M94081|TRAJ16*01|Homo sapiens|F|J-REGION|68743..68802|60 nt|3| | | | |60+0=60| | | 20 | tttgcaaggggaaccatgttaaaggtggat 21 | >X05773|TRAJ17*01|Homo sapiens|F|J-REGION|173..235|63 nt|3| | | | |63+0=63| | | 22 | tttggaggaggaaccagggtgctagttaaa 23 | >M94081|TRAJ18*01|Homo sapiens|F|J-REGION|65876..65941|66 nt|3| | | | |66+0=66| | | 24 | tttggaagaggaactcagttgactgtctgg 25 | >M94081|TRAJ19*01|Homo sapiens|ORF|J-REGION|65489..65548|60 nt|3| | | | |60+0=60| | | 26 | tttggaaagggatccaaacataatgtcact 27 | >X02884|TRAJ2*01|Homo sapiens|ORF|J-REGION|1397..1462|66 nt|3| | | | |66+0=66| | | 28 | tttgggaaagggacccatgtattcattata 29 | >M94081|TRAJ20*01|Homo sapiens|F|J-REGION|64552..64608|57 nt|3| | | | |57+0=57| | | 30 | tttggagccggaaccacagtaactgtaaga 31 | >M94081|TRAJ21*01|Homo sapiens|F|J-REGION|63829..63883|55 nt|1| | | | |55+0=55| | | 32 | tttggatctgggaccaaactcaatgtaaaa 33 | >X02886|TRAJ22*01|Homo sapiens|F|J-REGION|405..467|63 nt|3| | | | |63+0=63| | | 34 | tttggatctgggacacaattgactgtttta 35 | >M94081|TRAJ23*01|Homo sapiens|F|J-REGION|60650..60712|63 nt|3| | | | |63+0=63| | | 36 | ttcggacagggaacggagttatctgtgaaa 37 | >X58763|TRAJ23*02|Homo sapiens|F|J-REGION|61..123|63 nt|3| | | | |63+0=63| | | 38 | ttcggacagggaacggagctatctgtgaaa 39 | >X02887|TRAJ24*01|Homo sapiens|F|J-REGION|124..186|63 nt|3| | | | |63+0=63| | | 40 | tttggagcagggacccaggttgtggtcacc 41 | >M94081|TRAJ24*02|Homo sapiens|F|J-REGION|60203..60265|63 nt|3| | | | |63+0=63| | | 42 | tttggagcagggacccaggttgtggtcacc 43 | >X02888|TRAJ25*01|Homo sapiens|ORF|J-REGION|35..94|60 nt|3| | | | |60+0=60| | | 44 | tttgggaaggggacaaggctgcttgtcaag 45 | >M94081|TRAJ26*01|Homo sapiens|F|J-REGION|58680..58739|60 nt|3| | | | |60+0=60| | | 46 | tttggtcccggaaccagattgtccgtgctg 47 | >M94081|TRAJ27*01|Homo sapiens|F|J-REGION|56507..56565|59 nt|2| | | | |59+0=59| | | 48 | tttggggatgggactacgctcactgtgaag 49 | >M94081|TRAJ28*01|Homo sapiens|F|J-REGION|55857..55922|66 nt|3| | | | |66+0=66| | | 50 | ttcgggaaggggaccaaactctcggtcata 51 | >M94081|TRAJ29*01|Homo sapiens|F|J-REGION|54177..54236|60 nt|3| | | | |60+0=60| | | 52 | tttggaaagggcacaagactttctgtgatt 53 | >X02884|TRAJ3*01|Homo sapiens|F|J-REGION|504..565|62 nt|2| | | | |62+0=62| | | 54 | tttggatcagggaccagactcagcatccgg 55 | >M94081|TRAJ30*01|Homo sapiens|F|J-REGION|53090..53146|57 nt|3| | | | |57+0=57| | | 56 | tttggaaaagggacacgacttcatattctc 57 | >M94081|TRAJ31*01|Homo sapiens|F|J-REGION|51207..51263|57 nt|3| | || |57+0=57| | | 58 | tttggagatggaactcagctggtggtgaag 59 | >M94081|TRAJ32*01|Homo sapiens|F|J-REGION|49581..49646|66 nt|3| | | | |66+0=66| | | 60 | tttggaactggcactctgcttgctgtccag 61 | >AF532854|TRAJ32*02|Homo sapiens|(F)|J-REGION|240..299,a|60 nt|3| |1|| |60+0=60| | | 62 | tttggaactggcactctgcttgctgtccag 63 | >M35622|TRAJ34*01|Homo sapiens|F|J-REGION|30..87|58 nt|1| | | | |58+0=58| | | 64 | tttgggactgggaccagattacaagtcttt 65 | >M94081|TRAJ36*01|Homo sapiens|F|J-REGION|45353..45411|59 nt|2| | | | |59+0=59| | | 66 | tttgggactggaacgagactcaccgttatt 67 | >M94081|TRAJ37*01|Homo sapiens|F|J-REGION|43993..44054|62 nt|2| | | | |62+0=62| | | 68 | tttgggcaagggacaactttacaagtaaaa 69 | >AJ007774|TRAJ37*02|Homo sapiens|(F)|J-REGION|336..397,g|62 nt|2| |1| | |62+0=62| | | 70 | tttgggcaagggacaactttacaagtaaaa 71 | >M94081|TRAJ39*01|Homo sapiens|F|J-REGION|41843..41905|63 nt|3| | | | |63+0=63| | | 72 | tttggagggggaacaaggttaatggtcaaa 73 | >M94081|TRAJ4*01|Homo sapiens|F|J-REGION|82396..82458|63 nt|3| | | | |63+0=63| | | 74 | tttggagcagggaccaggctggctgtacac 75 | >M35620|TRAJ40*01|Homo sapiens|F|J-REGION|35..95|61 nt|1| | | | |61+0=61| | | 76 | tttggaacaggcaccaggctgaaggtttta 77 | >M94081|TRAJ41*01|Homo sapiens|F|J-REGION|37900..37961|62 nt|2| | | | |62+0=62| | | 78 | ttcggcaaaggcacctcgctgttggtcaca 79 | >M94081|TRAJ42*01|Homo sapiens|F|J-REGION|37130..37195|66 nt|3| | | | |66+0=66| | | 80 | tttggaaaaggcactaaactctctgttaaa 81 | >M94081|TRAJ43*01|Homo sapiens|F|J-REGION|36154..36207|54 nt|3| | | | |54+0=54| | | 82 | tttggagcagggaccagactgacagtaaaa 83 | >M35619|TRAJ44*01|Homo sapiens|F|J-REGION|30..92|63 nt|3| | | | |63+0=63| | | 84 | tttgggactggaacaagacttcaggtcacg 85 | >M94081|TRAJ45*01|Homo sapiens|F|J-REGION|34169..34234|66 nt|3| | | | |66+0=66| | | 86 | tttggcaaagggactcatctaatcatccag 87 | >M94081|TRAJ46*01|Homo sapiens|F|J-REGION|33647..33709|63 nt|3| | | | |63+0=63| | | 88 | tttgggaccgggactcgtttagcagttagg 89 | >M94081|TRAJ47*01|Homo sapiens|F|J-REGION|33096..33152|57 nt|3| | | | |57+0=57| | | 90 | tttggcgcaggaaccattctgagagtcaag 91 | >AF033825|TRAJ47*02|Homo sapiens|(F)|J-REGION|312..368,t|57 nt|3| |1| | |57+0=57| | | 92 | tttggcgcaggaaccattctgagagtcaag 93 | >M94081|TRAJ48*01|Homo sapiens|F|J-REGION|30737..30799|63 nt|3| | | | |63+0=63| | | 94 | tttgggactggaacaagactcaccatcata 95 | >M94081|TRAJ49*01|Homo sapiens|F|J-REGION|29734..29789|56 nt|2| | | | |56+0=56| | | 96 | tttgggacagggacaagtttgacggtcatt 97 | >M94081|TRAJ5*01|Homo sapiens|F|J-REGION|80444..80503|60 nt|3| | | | |60+0=60| | | 98 | tttgggagtggaacaagactccaagtgcaa 99 | >M94081|TRAJ50*01|Homo sapiens|F|J-REGION|28839..28898|60 nt|3| | | | |60+0=60| | | 100 | tttgggccagggacaagcttatcagtcatt 101 | >M94081|TRAJ52*01|Homo sapiens|F|J-REGION|26474..26542|69 nt|3| | | | |69+0=69| | | 102 | tttggacaagggaccatcttgactgtccat 103 | >M94081|TRAJ53*01|Homo sapiens|F|J-REGION|23251..23316|66 nt|3| | | | |66+0=66| | | 104 | tttggaaaaggaactctcttaaccgtgaat 105 | >M94081|TRAJ54*01|Homo sapiens|F|J-REGION|22534..22593|60 nt|3| | | | |60+0=60| | | 106 | tttggccaaggaaccaggctgactatcaac 107 | >M94081|TRAJ56*01|Homo sapiens|F|J-REGION|19768..19829|62 nt|2| | | | |62+0=62| | | 108 | tttggaaaaggaataactctgagtgttaga 109 | >M94081|TRAJ57*01|Homo sapiens|F|J-REGION|19119..19181|63 nt|3| | | | |63+0=63| | | 110 | tttggaaagggaacgaaactgacagtaaac 111 | >M94081|TRAJ58*01|Homo sapiens|ORF|J-REGION|17954..18016|63 nt|3| | | | |63+0=63| | | 112 | tttggggaaggaacacagctcacagtgaat 113 | >M94081|TRAJ59*01|Homo sapiens|ORF|J-REGION|16801..16860|60 nt|3| | || |60+0=60| | | 114 | tttggaatggggacgcaagtgagagtgaag 115 | >M16747|TRAJ6*01|Homo sapiens|F|J-REGION|31..92|62 nt|2| | | | |62+0=62| | | 116 | tttggaagaggaaccagccttattgttcat 117 | >M94081|TRAJ60*01|Homo sapiens|P|J-REGION|16554..16610|57 nt|3| | | | |57+0=57| | | 118 | tttgggaaggggactgagttaattgtgagc 119 | >M94081|TRAJ7*01|Homo sapiens|F|J-REGION|77821..77879|59 nt|2| | | | |59+0=59| | | 120 | tttgggaaggggaaccaagtggtggtcata 121 | >M94081|TRAJ8*01|Homo sapiens|F|J-REGION|76346..76405|60 nt|3| | | | |60+0=60| | | 122 | tttggaactggcacccgacttctggtcagt 123 | >M94081|TRAJ9*01|Homo sapiens|F|J-REGION|75756..75816|61 nt|1| | | | |61+0=61| | | 124 | tttggagcaggaacaagactatttgttaaa 125 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAJ-gai2-DNA.fa.amb: -------------------------------------------------------------------------------- 1 | 1860 62 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAJ-gai2-DNA.fa.ann: -------------------------------------------------------------------------------- 1 | 1860 62 11 2 | 0 X02884|TRAJ1*01|Homo sapiens|ORF|J-REGION|2363..2424|62 nt|2| | | | |62+0=62| | | 3 | 0 30 0 4 | 0 M94081|TRAJ10*01|Homo sapiens|F|J-REGION|73699..73762|64 nt|1| | | | |64+0=64| | | 5 | 30 30 0 6 | 0 M94081|TRAJ11*01|Homo sapiens|F|J-REGION|72706..72765|60 nt|3| | | | |60+0=60| | | 7 | 60 30 0 8 | 0 X02885|TRAJ12*01|Homo sapiens|F|J-REGION|53..112|60 nt|3| | | | |60+0=60| | | 9 | 90 30 0 10 | 0 M94081|TRAJ13*01|Homo sapiens|F|J-REGION|71280..71342|63 nt|3| | | | |63+0=63| | | 11 | 120 30 0 12 | 0 AB258131|TRAJ13*02|Homo sapiens|F|J-REGION|101..163|63 nt|3| | || |63+0=63| | | 13 | 150 30 0 14 | 0 M94081|TRAJ14*01|Homo sapiens|F|J-REGION|70532..70583|52 nt|1| | | | |52+0=52| | | 15 | 180 30 0 16 | 0 X05775|TRAJ15*01|Homo sapiens|F|J-REGION|80..139|60 nt|3| | | | |60+0=60| | | 17 | 210 30 0 18 | 0 M94081|TRAJ15*02|Homo sapiens|F|J-REGION|69836..69895|60 nt|3| | | | |60+0=60| | | 19 | 240 30 0 20 | 0 M94081|TRAJ16*01|Homo sapiens|F|J-REGION|68743..68802|60 nt|3| | | | |60+0=60| | | 21 | 270 30 0 22 | 0 X05773|TRAJ17*01|Homo sapiens|F|J-REGION|173..235|63 nt|3| | | | |63+0=63| | | 23 | 300 30 0 24 | 0 M94081|TRAJ18*01|Homo sapiens|F|J-REGION|65876..65941|66 nt|3| | | | |66+0=66| | | 25 | 330 30 0 26 | 0 M94081|TRAJ19*01|Homo sapiens|ORF|J-REGION|65489..65548|60 nt|3| | | | |60+0=60| | | 27 | 360 30 0 28 | 0 X02884|TRAJ2*01|Homo sapiens|ORF|J-REGION|1397..1462|66 nt|3| | | | |66+0=66| | | 29 | 390 30 0 30 | 0 M94081|TRAJ20*01|Homo sapiens|F|J-REGION|64552..64608|57 nt|3| | | | |57+0=57| | | 31 | 420 30 0 32 | 0 M94081|TRAJ21*01|Homo sapiens|F|J-REGION|63829..63883|55 nt|1| | | | |55+0=55| | | 33 | 450 30 0 34 | 0 X02886|TRAJ22*01|Homo sapiens|F|J-REGION|405..467|63 nt|3| | | | |63+0=63| | | 35 | 480 30 0 36 | 0 M94081|TRAJ23*01|Homo sapiens|F|J-REGION|60650..60712|63 nt|3| | | | |63+0=63| | | 37 | 510 30 0 38 | 0 X58763|TRAJ23*02|Homo sapiens|F|J-REGION|61..123|63 nt|3| | | | |63+0=63| | | 39 | 540 30 0 40 | 0 X02887|TRAJ24*01|Homo sapiens|F|J-REGION|124..186|63 nt|3| | | | |63+0=63| | | 41 | 570 30 0 42 | 0 M94081|TRAJ24*02|Homo sapiens|F|J-REGION|60203..60265|63 nt|3| | | | |63+0=63| | | 43 | 600 30 0 44 | 0 X02888|TRAJ25*01|Homo sapiens|ORF|J-REGION|35..94|60 nt|3| | | | |60+0=60| | | 45 | 630 30 0 46 | 0 M94081|TRAJ26*01|Homo sapiens|F|J-REGION|58680..58739|60 nt|3| | | | |60+0=60| | | 47 | 660 30 0 48 | 0 M94081|TRAJ27*01|Homo sapiens|F|J-REGION|56507..56565|59 nt|2| | | | |59+0=59| | | 49 | 690 30 0 50 | 0 M94081|TRAJ28*01|Homo sapiens|F|J-REGION|55857..55922|66 nt|3| | | | |66+0=66| | | 51 | 720 30 0 52 | 0 M94081|TRAJ29*01|Homo sapiens|F|J-REGION|54177..54236|60 nt|3| | | | |60+0=60| | | 53 | 750 30 0 54 | 0 X02884|TRAJ3*01|Homo sapiens|F|J-REGION|504..565|62 nt|2| | | | |62+0=62| | | 55 | 780 30 0 56 | 0 M94081|TRAJ30*01|Homo sapiens|F|J-REGION|53090..53146|57 nt|3| | | | |57+0=57| | | 57 | 810 30 0 58 | 0 M94081|TRAJ31*01|Homo sapiens|F|J-REGION|51207..51263|57 nt|3| | || |57+0=57| | | 59 | 840 30 0 60 | 0 M94081|TRAJ32*01|Homo sapiens|F|J-REGION|49581..49646|66 nt|3| | | | |66+0=66| | | 61 | 870 30 0 62 | 0 AF532854|TRAJ32*02|Homo sapiens|(F)|J-REGION|240..299,a|60 nt|3| |1|| |60+0=60| | | 63 | 900 30 0 64 | 0 M35622|TRAJ34*01|Homo sapiens|F|J-REGION|30..87|58 nt|1| | | | |58+0=58| | | 65 | 930 30 0 66 | 0 M94081|TRAJ36*01|Homo sapiens|F|J-REGION|45353..45411|59 nt|2| | | | |59+0=59| | | 67 | 960 30 0 68 | 0 M94081|TRAJ37*01|Homo sapiens|F|J-REGION|43993..44054|62 nt|2| | | | |62+0=62| | | 69 | 990 30 0 70 | 0 AJ007774|TRAJ37*02|Homo sapiens|(F)|J-REGION|336..397,g|62 nt|2| |1| | |62+0=62| | | 71 | 1020 30 0 72 | 0 M94081|TRAJ39*01|Homo sapiens|F|J-REGION|41843..41905|63 nt|3| | | | |63+0=63| | | 73 | 1050 30 0 74 | 0 M94081|TRAJ4*01|Homo sapiens|F|J-REGION|82396..82458|63 nt|3| | | | |63+0=63| | | 75 | 1080 30 0 76 | 0 M35620|TRAJ40*01|Homo sapiens|F|J-REGION|35..95|61 nt|1| | | | |61+0=61| | | 77 | 1110 30 0 78 | 0 M94081|TRAJ41*01|Homo sapiens|F|J-REGION|37900..37961|62 nt|2| | | | |62+0=62| | | 79 | 1140 30 0 80 | 0 M94081|TRAJ42*01|Homo sapiens|F|J-REGION|37130..37195|66 nt|3| | | | |66+0=66| | | 81 | 1170 30 0 82 | 0 M94081|TRAJ43*01|Homo sapiens|F|J-REGION|36154..36207|54 nt|3| | | | |54+0=54| | | 83 | 1200 30 0 84 | 0 M35619|TRAJ44*01|Homo sapiens|F|J-REGION|30..92|63 nt|3| | | | |63+0=63| | | 85 | 1230 30 0 86 | 0 M94081|TRAJ45*01|Homo sapiens|F|J-REGION|34169..34234|66 nt|3| | | | |66+0=66| | | 87 | 1260 30 0 88 | 0 M94081|TRAJ46*01|Homo sapiens|F|J-REGION|33647..33709|63 nt|3| | | | |63+0=63| | | 89 | 1290 30 0 90 | 0 M94081|TRAJ47*01|Homo sapiens|F|J-REGION|33096..33152|57 nt|3| | | | |57+0=57| | | 91 | 1320 30 0 92 | 0 AF033825|TRAJ47*02|Homo sapiens|(F)|J-REGION|312..368,t|57 nt|3| |1| | |57+0=57| | | 93 | 1350 30 0 94 | 0 M94081|TRAJ48*01|Homo sapiens|F|J-REGION|30737..30799|63 nt|3| | | | |63+0=63| | | 95 | 1380 30 0 96 | 0 M94081|TRAJ49*01|Homo sapiens|F|J-REGION|29734..29789|56 nt|2| | | | |56+0=56| | | 97 | 1410 30 0 98 | 0 M94081|TRAJ5*01|Homo sapiens|F|J-REGION|80444..80503|60 nt|3| | | | |60+0=60| | | 99 | 1440 30 0 100 | 0 M94081|TRAJ50*01|Homo sapiens|F|J-REGION|28839..28898|60 nt|3| | | | |60+0=60| | | 101 | 1470 30 0 102 | 0 M94081|TRAJ52*01|Homo sapiens|F|J-REGION|26474..26542|69 nt|3| | | | |69+0=69| | | 103 | 1500 30 0 104 | 0 M94081|TRAJ53*01|Homo sapiens|F|J-REGION|23251..23316|66 nt|3| | | | |66+0=66| | | 105 | 1530 30 0 106 | 0 M94081|TRAJ54*01|Homo sapiens|F|J-REGION|22534..22593|60 nt|3| | | | |60+0=60| | | 107 | 1560 30 0 108 | 0 M94081|TRAJ56*01|Homo sapiens|F|J-REGION|19768..19829|62 nt|2| | | | |62+0=62| | | 109 | 1590 30 0 110 | 0 M94081|TRAJ57*01|Homo sapiens|F|J-REGION|19119..19181|63 nt|3| | | | |63+0=63| | | 111 | 1620 30 0 112 | 0 M94081|TRAJ58*01|Homo sapiens|ORF|J-REGION|17954..18016|63 nt|3| | | | |63+0=63| | | 113 | 1650 30 0 114 | 0 M94081|TRAJ59*01|Homo sapiens|ORF|J-REGION|16801..16860|60 nt|3| | || |60+0=60| | | 115 | 1680 30 0 116 | 0 M16747|TRAJ6*01|Homo sapiens|F|J-REGION|31..92|62 nt|2| | | | |62+0=62| | | 117 | 1710 30 0 118 | 0 M94081|TRAJ60*01|Homo sapiens|P|J-REGION|16554..16610|57 nt|3| | | | |57+0=57| | | 119 | 1740 30 0 120 | 0 M94081|TRAJ7*01|Homo sapiens|F|J-REGION|77821..77879|59 nt|2| | | | |59+0=59| | | 121 | 1770 30 0 122 | 0 M94081|TRAJ8*01|Homo sapiens|F|J-REGION|76346..76405|60 nt|3| | | | |60+0=60| | | 123 | 1800 30 0 124 | 0 M94081|TRAJ9*01|Homo sapiens|F|J-REGION|75756..75816|61 nt|1| | | | |61+0=61| | | 125 | 1830 30 0 126 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAJ-gai2-DNA.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAJ-gai2-DNA.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAJ-gai2-DNA.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAJ-gai2-DNA.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAJ-gai2-DNA.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAJ-gai2-DNA.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR1-back.fa: -------------------------------------------------------------------------------- 1 | >AE000658|TRAV1-1*01|Homo 2 | ctgtcctggtaccagcaacatgatggcgga 3 | >X04939|TRAV1-1*02|Homo 4 | ctgtcctggtaccagcaacatgatggcgga 5 | >AE000658|TRAV1-2*01|Homo 6 | ctgttctggtaccagcaacatgctggcgaa 7 | >U32544|TRAV1-2*02|Homo 8 | ctgttctggtaccagcaacatgctggcgaa 9 | >AE000659|TRAV10*01|Homo 10 | ttaaggtggtataagcaagatactgggaga 11 | >AE000659|TRAV11*01|Homo 12 | ttccactggttccggcaggatccggggaga 13 | >AE000659|TRAV12-1*01|Homo 14 | ttcttctggtacagacaggattgcaggaaa 15 | >M17657|TRAV12-1*02|Homo 16 | ttcttctggtacagacaggattgcaggaaa 17 | >AE000659|TRAV12-2*01|Homo 18 | ttcttctggtacagacaatattctgggaaa 19 | >M81774|TRAV12-2*02|Homo 20 | ttcttctggtacagacaatattctgggaaa 21 | >X04946|TRAV12-2*03|Homo 22 | ttcttctggtacagacaatattctgggaaa 23 | >AE000659|TRAV12-3*01|Homo 24 | ttcatgtggtacagacagtattccagaaaa 25 | >M17656|TRAV12-3*02|Homo 26 | ttcatgtggtacagacagtattccagaata 27 | >AE000659|TRAV13-1*01|Homo 28 | ttcccttggtataagcaagaacttggaaaa 29 | >X04954|TRAV13-1*02|Homo 30 | ttcccttggtataagcaagaacttggaaaa 31 | >L11162|TRAV13-1*03|Homo 32 | ttcccttggtataagcaagaacttggaaaa 33 | >AE000659|TRAV13-2*01|Homo 34 | ttcatttggtacaagcaagaatctggaaaa 35 | >M17658|TRAV13-2*02|Homo 36 | ttcatttggtacaaacaagaatctggaaaa 37 | >M21626|TRAV14/DV4*01|Homo 38 | ctattctggtacaagcagcccagcagtggg 39 | >AE000659|TRAV14/DV4*02|Homo 40 | ctattctggtacaagcagcccagcagtggg 41 | >M21624|TRAV14/DV4*03|Homo 42 | ctattctggtacaagcagcccagcagtggg 43 | >L09758|TRAV14/DV4*04|Homo 44 | ctcttctggtacaagcagcccagcagtggg 45 | >AE000659|TRAV16*01|Homo 46 | ctcttctggtatgtccagtactccagacaa 47 | >AE000660|TRAV17*01|Homo 48 | ttacagtggtatagacaaaattcaggtaga 49 | >AE000660|TRAV18*01|Homo 50 | ctattctggtatgtccagtatctaaacaaa 51 | >AE000660|TRAV19*01|Homo 52 | ttattctggtacaagcaaccaccaagtgga 53 | >AE000658|TRAV2*01|Homo 54 | ttcttctggtaccttcacttcccgggatgt 55 | >M17659|TRAV2*02|Homo 56 | ttcttctggcaccttcacttcccgggatgt 57 | >AE000660|TRAV20*01|Homo 58 | ctgttctggtataggcaagatcctgggaaa 59 | >X68696|TRAV20*02|Homo 60 | ctgttctggtataggcaagatcctgggaaa 61 | >S60789|TRAV20*03|Homo 62 | ctgttctggtataggcaagatcctgggaaa 63 | >X70305|TRAV20*04|Homo 64 | ctgttctggtataggcaagatcctgggaaa 65 | >AE000660|TRAV21*01|Homo 66 | ctccagtggtttaggcaggaccctgggaaa 67 | >X58736|TRAV21*02|Homo 68 | ctccagtggtttaggcaggaccctgggaaa 69 | >AE000660|TRAV22*01|Homo 70 | ttgcagtggtttcatcaaaacccttgggga 71 | >AE000660|TRAV23/DV6*01|Homo 72 | tttccatggtaccaacaattccctgggaaa 73 | >M17660|TRAV23/DV6*02|Homo 74 | tttccatggtaccaacaattccctgggaaa 75 | >M97704|TRAV23/DV6*03|Homo 76 | tttccatggtaccaacagttccctgggaaa 77 | >Y10411|TRAV23/DV6*04|Homo 78 | tttccatggtaccagcaattccctgggaaa 79 | >AE000660|TRAV24*01|Homo 80 | ttacactggtacagatgggaaactgcaaaa 81 | >M17661|TRAV24*02|Homo 82 | ttacactggtacagatgggaaactgccaaa 83 | >AE000660|TRAV25*01|Homo 84 | atacagtggtataagcaaaggcctggtgga 85 | >AE000660|TRAV26-1*01|Homo 86 | gtgtattggtatcgacagattcactcccag 87 | >M27371|TRAV26-1*02|Homo 88 | gtgtattggtatcgacagattcactcccag 89 | >L06886|TRAV26-1*03|Homo 90 | gtgtattggtatcgacagattcactcccag 91 | >AE000660|TRAV26-2*01|Homo 92 | atacattggtatcgacagcttccctcccag 93 | >L11160|TRAV26-2*02|Homo 94 | atacattggtatcgacagcttccctcccag 95 | >AE000660|TRAV27*01|Homo 96 | ttacaatggtacagacaggagcctggggaa 97 | >X04957|TRAV27*02|Homo 98 | ttacaatggtacaggcaggagcctggggaa 99 | >D13075|TRAV27*03|Homo 100 | ttacaatggtacagacaggagcctggggaa 101 | >AE000660|TRAV29/DV5*01|Homo 102 | ttcctatggtacaaaaaataccctgctgaa 103 | >S81645|TRAV29/DV5*02|Homo 104 | ttcctatggtacaaaaaataccctgctgaa 105 | >AE000658|TRAV3*01|Homo 106 | cttttttggtatgttcaataccccaaccga 107 | >AE000660|TRAV30*01|Homo 108 | gtacactggtacaggcagaagcatggtgaa 109 | >X58768|TRAV30*02|Homo 110 | gtacactggtacaggcagaagcatggtgaa 111 | >L06883|TRAV30*03|Homo 112 | gtacactggtacaggcagaagcatggtgaa 113 | >U32537|TRAV30*04|Homo 114 | gtacactggtacaggcagaagcatggtgaa 115 | >AE000660|TRAV34*01|Homo 116 | ttatactggtataagcaaaagtatggtgaa 117 | >AE000660|TRAV35*01|Homo 118 | tggctatggtacaagcaggaacctggggaa 119 | >X58738|TRAV35*02|Homo 120 | tggctatggtacaagcaggaccctggggaa 121 | >AE000660|TRAV36/DV7*01|Homo 122 | ctactatggtacaagcaggaaaagaaagct 123 | >X61070|TRAV36/DV7*02|Homo 124 | ctacaatggtacaagcaggaaaagaaagct 125 | >X58767|TRAV36/DV7*03|Homo 126 | ctactatggtacaagcaggaaaagaaagct 127 | >Z46643|TRAV36/DV7*04|Homo 128 | ctactatggtacaagcaggaaaagaaagct 129 | >AE000661|TRAV38-1*01|Homo 130 | ttgttctggtacaagcagcctcccagcagg 131 | >M64355|TRAV38-1*02|Homo 132 | ttgttctggtacaagcagcctcccagcagg 133 | >M95394|TRAV38-1*03|Homo 134 | ttgttctggtacaaacagcctcccagcagg 135 | >L06880|TRAV38-1*04|Homo 136 | ttgttctggtacaagcagcctcccagcagg 137 | >AE000661|TRAV38-2/DV8*01|Homo 138 | ttattctggtacaagcagcctcccagcagg 139 | >AE000661|TRAV39*01|Homo 140 | ctgtattggtacaggcaggatcctgggaaa 141 | >AE000658|TRAV4*01|Homo 142 | atcacgtggtaccaacagtttcccagccaa 143 | >X73521|TRAV40*01|Homo 144 | cttttctggtatgtggaataccccagcaaa 145 | >AE000661|TRAV41*01|Homo 146 | ttacactggctgcaacagcatccaggagga 147 | >AE000659|TRAV5*01|Homo 148 | ttatactggtataagcaagaacctggagca 149 | >AE000659|TRAV6*01|Homo 150 | ttacagtggtaccgacaagatccaggaaga 151 | >X58747|TRAV6*02|Homo 152 | ttacagtggtaccgacaagatccaggaaga 153 | >Z49060|TRAV6*03|Homo 154 | ttacagtggtaccgacaagatccaggaaga 155 | >Y10409|TRAV6*04|Homo 156 | ttacagtggtaccgacaagatccaggaaga 157 | >Y10410|TRAV6*05|Homo 158 | ttacagtggtaccgacaagatccaggaaga 159 | >U32542|TRAV6*06|Homo 160 | ttacagtggtaccgacaagatccaggaaga 161 | >AE000659|TRAV7*01|Homo 162 | ttgcagtggtacaggcaaaatacagggatg 163 | >AE000659|TRAV8-1*01|Homo 164 | ctcttctggtatgtccagtaccctggtcaa 165 | >U32520|TRAV8-1*02|Homo 166 | ctcttctggtatgtccagtaccctggtcaa 167 | >AE000659|TRAV8-2*01|Homo 168 | ctcttctggtatgtgcaacaccccaacaaa 169 | >M17650|TRAV8-2*02|Homo 170 | ctcttctggtatgtgcaacaccccaacaaa 171 | >AE000659|TRAV8-3*01|Homo 172 | ctcttctggtatgtccagtcccccggccaa 173 | >M35617|TRAV8-3*02|Homo 174 | ctcttctggtatgtccagtcccccggccaa 175 | >L06885|TRAV8-3*03|Homo 176 | ctcttctggtatgtccagtcccccggccaa 177 | >AE000659|TRAV8-4*01|Homo 178 | ctcttctggtatgtgcaataccccaaccaa 179 | >M12423|TRAV8-4*02|Homo 180 | ctcttctggtatgtgcaataccccaaccaa 181 | >D13077|TRAV8-4*03|Homo 182 | ctcttctggtatgtgcaataccccaaccaa 183 | >M12959|TRAV8-4*04|Homo 184 | ctcttctggtatgtgcaataccccaaccaa 185 | >X63455|TRAV8-4*05|Homo 186 | ctcttctggtatgtgcaataccccaaccaa 187 | >X02850|TRAV8-6*01|Homo 188 | ctcttctggtatgtgcaataccccaaccaa 189 | >AE000659|TRAV8-6*02|Homo 190 | ctcttctggtatgtgcaataccccaaccaa 191 | >AE000660|TRAV8-7*01|Homo 192 | ctcttctggtatgtccaatactctagccaa 193 | >AE000659|TRAV9-1*01|Homo 194 | cttttttggtatgtccaatatcctggagaa 195 | >AE000659|TRAV9-2*01|Homo 196 | cttttctggtatgtccaatatcctggagaa 197 | >X58745|TRAV9-2*02|Homo 198 | cttttctggtatgtccaatatcctggagaa 199 | >L06881|TRAV9-2*03|Homo 200 | cttttctggtatgtccaatatcctggagaa 201 | >L06882|TRAV9-2*04|Homo 202 | cttttctggtatgtccaatatcctggagaa 203 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR1-back.fa.amb: -------------------------------------------------------------------------------- 1 | 3030 101 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR1-back.fa.ann: -------------------------------------------------------------------------------- 1 | 3030 101 11 2 | 0 AE000658|TRAV1-1*01|Homo (null) 3 | 0 30 0 4 | 0 X04939|TRAV1-1*02|Homo (null) 5 | 30 30 0 6 | 0 AE000658|TRAV1-2*01|Homo (null) 7 | 60 30 0 8 | 0 U32544|TRAV1-2*02|Homo (null) 9 | 90 30 0 10 | 0 AE000659|TRAV10*01|Homo (null) 11 | 120 30 0 12 | 0 AE000659|TRAV11*01|Homo (null) 13 | 150 30 0 14 | 0 AE000659|TRAV12-1*01|Homo (null) 15 | 180 30 0 16 | 0 M17657|TRAV12-1*02|Homo (null) 17 | 210 30 0 18 | 0 AE000659|TRAV12-2*01|Homo (null) 19 | 240 30 0 20 | 0 M81774|TRAV12-2*02|Homo (null) 21 | 270 30 0 22 | 0 X04946|TRAV12-2*03|Homo (null) 23 | 300 30 0 24 | 0 AE000659|TRAV12-3*01|Homo (null) 25 | 330 30 0 26 | 0 M17656|TRAV12-3*02|Homo (null) 27 | 360 30 0 28 | 0 AE000659|TRAV13-1*01|Homo (null) 29 | 390 30 0 30 | 0 X04954|TRAV13-1*02|Homo (null) 31 | 420 30 0 32 | 0 L11162|TRAV13-1*03|Homo (null) 33 | 450 30 0 34 | 0 AE000659|TRAV13-2*01|Homo (null) 35 | 480 30 0 36 | 0 M17658|TRAV13-2*02|Homo (null) 37 | 510 30 0 38 | 0 M21626|TRAV14/DV4*01|Homo (null) 39 | 540 30 0 40 | 0 AE000659|TRAV14/DV4*02|Homo (null) 41 | 570 30 0 42 | 0 M21624|TRAV14/DV4*03|Homo (null) 43 | 600 30 0 44 | 0 L09758|TRAV14/DV4*04|Homo (null) 45 | 630 30 0 46 | 0 AE000659|TRAV16*01|Homo (null) 47 | 660 30 0 48 | 0 AE000660|TRAV17*01|Homo (null) 49 | 690 30 0 50 | 0 AE000660|TRAV18*01|Homo (null) 51 | 720 30 0 52 | 0 AE000660|TRAV19*01|Homo (null) 53 | 750 30 0 54 | 0 AE000658|TRAV2*01|Homo (null) 55 | 780 30 0 56 | 0 M17659|TRAV2*02|Homo (null) 57 | 810 30 0 58 | 0 AE000660|TRAV20*01|Homo (null) 59 | 840 30 0 60 | 0 X68696|TRAV20*02|Homo (null) 61 | 870 30 0 62 | 0 S60789|TRAV20*03|Homo (null) 63 | 900 30 0 64 | 0 X70305|TRAV20*04|Homo (null) 65 | 930 30 0 66 | 0 AE000660|TRAV21*01|Homo (null) 67 | 960 30 0 68 | 0 X58736|TRAV21*02|Homo (null) 69 | 990 30 0 70 | 0 AE000660|TRAV22*01|Homo (null) 71 | 1020 30 0 72 | 0 AE000660|TRAV23/DV6*01|Homo (null) 73 | 1050 30 0 74 | 0 M17660|TRAV23/DV6*02|Homo (null) 75 | 1080 30 0 76 | 0 M97704|TRAV23/DV6*03|Homo (null) 77 | 1110 30 0 78 | 0 Y10411|TRAV23/DV6*04|Homo (null) 79 | 1140 30 0 80 | 0 AE000660|TRAV24*01|Homo (null) 81 | 1170 30 0 82 | 0 M17661|TRAV24*02|Homo (null) 83 | 1200 30 0 84 | 0 AE000660|TRAV25*01|Homo (null) 85 | 1230 30 0 86 | 0 AE000660|TRAV26-1*01|Homo (null) 87 | 1260 30 0 88 | 0 M27371|TRAV26-1*02|Homo (null) 89 | 1290 30 0 90 | 0 L06886|TRAV26-1*03|Homo (null) 91 | 1320 30 0 92 | 0 AE000660|TRAV26-2*01|Homo (null) 93 | 1350 30 0 94 | 0 L11160|TRAV26-2*02|Homo (null) 95 | 1380 30 0 96 | 0 AE000660|TRAV27*01|Homo (null) 97 | 1410 30 0 98 | 0 X04957|TRAV27*02|Homo (null) 99 | 1440 30 0 100 | 0 D13075|TRAV27*03|Homo (null) 101 | 1470 30 0 102 | 0 AE000660|TRAV29/DV5*01|Homo (null) 103 | 1500 30 0 104 | 0 S81645|TRAV29/DV5*02|Homo (null) 105 | 1530 30 0 106 | 0 AE000658|TRAV3*01|Homo (null) 107 | 1560 30 0 108 | 0 AE000660|TRAV30*01|Homo (null) 109 | 1590 30 0 110 | 0 X58768|TRAV30*02|Homo (null) 111 | 1620 30 0 112 | 0 L06883|TRAV30*03|Homo (null) 113 | 1650 30 0 114 | 0 U32537|TRAV30*04|Homo (null) 115 | 1680 30 0 116 | 0 AE000660|TRAV34*01|Homo (null) 117 | 1710 30 0 118 | 0 AE000660|TRAV35*01|Homo (null) 119 | 1740 30 0 120 | 0 X58738|TRAV35*02|Homo (null) 121 | 1770 30 0 122 | 0 AE000660|TRAV36/DV7*01|Homo (null) 123 | 1800 30 0 124 | 0 X61070|TRAV36/DV7*02|Homo (null) 125 | 1830 30 0 126 | 0 X58767|TRAV36/DV7*03|Homo (null) 127 | 1860 30 0 128 | 0 Z46643|TRAV36/DV7*04|Homo (null) 129 | 1890 30 0 130 | 0 AE000661|TRAV38-1*01|Homo (null) 131 | 1920 30 0 132 | 0 M64355|TRAV38-1*02|Homo (null) 133 | 1950 30 0 134 | 0 M95394|TRAV38-1*03|Homo (null) 135 | 1980 30 0 136 | 0 L06880|TRAV38-1*04|Homo (null) 137 | 2010 30 0 138 | 0 AE000661|TRAV38-2/DV8*01|Homo (null) 139 | 2040 30 0 140 | 0 AE000661|TRAV39*01|Homo (null) 141 | 2070 30 0 142 | 0 AE000658|TRAV4*01|Homo (null) 143 | 2100 30 0 144 | 0 X73521|TRAV40*01|Homo (null) 145 | 2130 30 0 146 | 0 AE000661|TRAV41*01|Homo (null) 147 | 2160 30 0 148 | 0 AE000659|TRAV5*01|Homo (null) 149 | 2190 30 0 150 | 0 AE000659|TRAV6*01|Homo (null) 151 | 2220 30 0 152 | 0 X58747|TRAV6*02|Homo (null) 153 | 2250 30 0 154 | 0 Z49060|TRAV6*03|Homo (null) 155 | 2280 30 0 156 | 0 Y10409|TRAV6*04|Homo (null) 157 | 2310 30 0 158 | 0 Y10410|TRAV6*05|Homo (null) 159 | 2340 30 0 160 | 0 U32542|TRAV6*06|Homo (null) 161 | 2370 30 0 162 | 0 AE000659|TRAV7*01|Homo (null) 163 | 2400 30 0 164 | 0 AE000659|TRAV8-1*01|Homo (null) 165 | 2430 30 0 166 | 0 U32520|TRAV8-1*02|Homo (null) 167 | 2460 30 0 168 | 0 AE000659|TRAV8-2*01|Homo (null) 169 | 2490 30 0 170 | 0 M17650|TRAV8-2*02|Homo (null) 171 | 2520 30 0 172 | 0 AE000659|TRAV8-3*01|Homo (null) 173 | 2550 30 0 174 | 0 M35617|TRAV8-3*02|Homo (null) 175 | 2580 30 0 176 | 0 L06885|TRAV8-3*03|Homo (null) 177 | 2610 30 0 178 | 0 AE000659|TRAV8-4*01|Homo (null) 179 | 2640 30 0 180 | 0 M12423|TRAV8-4*02|Homo (null) 181 | 2670 30 0 182 | 0 D13077|TRAV8-4*03|Homo (null) 183 | 2700 30 0 184 | 0 M12959|TRAV8-4*04|Homo (null) 185 | 2730 30 0 186 | 0 X63455|TRAV8-4*05|Homo (null) 187 | 2760 30 0 188 | 0 X02850|TRAV8-6*01|Homo (null) 189 | 2790 30 0 190 | 0 AE000659|TRAV8-6*02|Homo (null) 191 | 2820 30 0 192 | 0 AE000660|TRAV8-7*01|Homo (null) 193 | 2850 30 0 194 | 0 AE000659|TRAV9-1*01|Homo (null) 195 | 2880 30 0 196 | 0 AE000659|TRAV9-2*01|Homo (null) 197 | 2910 30 0 198 | 0 X58745|TRAV9-2*02|Homo (null) 199 | 2940 30 0 200 | 0 L06881|TRAV9-2*03|Homo (null) 201 | 2970 30 0 202 | 0 L06882|TRAV9-2*04|Homo (null) 203 | 3000 30 0 204 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR1-back.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-CDR1-back.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR1-back.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-CDR1-back.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR1-back.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-CDR1-back.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR1-front.fa: -------------------------------------------------------------------------------- 1 | >AE000658|TRAV1-1*01|Homo 2 | gccattgtccagataaactgcacgtaccag 3 | >X04939|TRAV1-1*02|Homo 4 | gccattgtccagataaactgcacgtaccag 5 | >AE000658|TRAV1-2*01|Homo 6 | gccattgtccagatcaactgcacgtaccag 7 | >U32544|TRAV1-2*02|Homo 8 | gccattgtccagatcaactgcacgtaccag 9 | >AE000659|TRAV10*01|Homo 10 | aagaactgcactcttcaatgcaattataca 11 | >AE000659|TRAV11*01|Homo 12 | atgcatgccgttcttaattgtacttatcag 13 | >AE000659|TRAV12-1*01|Homo 14 | gccactgtcgctttcaactgtacttacagc 15 | >M17657|TRAV12-1*02|Homo 16 | gccactgtcgctttcaactgtacttacagc 17 | >AE000659|TRAV12-2*01|Homo 18 | gccattgcctctctcaactgcacttacagt 19 | >M81774|TRAV12-2*02|Homo 20 | gccattgcctctctcaactgcacttacagt 21 | >X04946|TRAV12-2*03|Homo 22 | gccattgcctctctcaactgcacttacagt 23 | >AE000659|TRAV12-3*01|Homo 24 | gccattgtttctctcaactgcacttacagc 25 | >M17656|TRAV12-3*02|Homo 26 | gccattgtttctctcaactgcacttacagc 27 | >AE000659|TRAV13-1*01|Homo 28 | gacagcgctgttatcaagtgtacttattca 29 | >X04954|TRAV13-1*02|Homo 30 | gacagcgctgttatcaagtgtacttattca 31 | >L11162|TRAV13-1*03|Homo 32 | gacagcgctgttatcaagtgtacttattca 33 | >AE000659|TRAV13-2*01|Homo 34 | gacaactctattatcaactgtgcttattca 35 | >M17658|TRAV13-2*02|Homo 36 | gacaactctattatcaactgtgcttattca 37 | >M21626|TRAV14/DV4*01|Homo 38 | gaggctgtgactctggactgcacatatgac 39 | >AE000659|TRAV14/DV4*02|Homo 40 | gaggctgtgactctggactgcacatatgac 41 | >M21624|TRAV14/DV4*03|Homo 42 | gaggctgtgactctggactgcacatatgac 43 | >L09758|TRAV14/DV4*04|Homo 44 | gaggctgtgactctggactgcacatatgac 45 | >AE000659|TRAV16*01|Homo 46 | gccccagtggagctgaagtgcaactattcc 47 | >AE000660|TRAV17*01|Homo 48 | gaaaatgccaccatgaactgcagttacaaa 49 | >AE000660|TRAV18*01|Homo 50 | gcagctctgacattaaactgcacttatcag 51 | >AE000660|TRAV19*01|Homo 52 | gaggatgtgaccttggactgtgtgtatgaa 53 | >AE000658|TRAV2*01|Homo 54 | gctgtggtggaaatcttctgtaatcactct 55 | >M17659|TRAV2*02|Homo 56 | gctgtggtggaaatcttctgtaatcactct 57 | >AE000660|TRAV20*01|Homo 58 | gagagtagcagtcttaactgcagttacaca 59 | >X68696|TRAV20*02|Homo 60 | gagagtagcagtctcaactgcagttacaca 61 | >S60789|TRAV20*03|Homo 62 | gagagtcgcagtctcaactgcagttacaca 63 | >X70305|TRAV20*04|Homo 64 | gagagtagcagtctcaactgcagttgcaca 65 | >AE000660|TRAV21*01|Homo 66 | gaaaacttggttctcaactgcagtttcact 67 | >X58736|TRAV21*02|Homo 68 | gaaaacttggttctcaactgcagtttcact 69 | >AE000660|TRAV22*01|Homo 70 | gccaattccacgctgcggtgcaatttttct 71 | >AE000660|TRAV23/DV6*01|Homo 72 | gggatttcaattataaactgtgcttatgag 73 | >M17660|TRAV23/DV6*02|Homo 74 | gggattccaattataaactgtgcttatgag 75 | >M97704|TRAV23/DV6*03|Homo 76 | gggatttcaattataaactgtgcttatgag 77 | >Y10411|TRAV23/DV6*04|Homo 78 | gggatttcaattataaactgtgcttatgag 79 | >AE000660|TRAV24*01|Homo 80 | gacagcaccaatttcacctgcagcttccct 81 | >M17661|TRAV24*02|Homo 82 | gacagcaccaatttcacctgcagcttccct 83 | >AE000660|TRAV25*01|Homo 84 | gaggacttcaccacgtactgcaattcctca 85 | >AE000660|TRAV26-1*01|Homo 86 | agagctgcaaacctgccttgtaatcactct 87 | >M27371|TRAV26-1*02|Homo 88 | agagctgcaaacctgccttgtaatcactct 89 | >L06886|TRAV26-1*03|Homo 90 | agagctgcaaacctgccttgtaatcactct 91 | >AE000660|TRAV26-2*01|Homo 92 | gagcctgttcacttgccttgtaaccactcc 93 | >L11160|TRAV26-2*02|Homo 94 | gagcctgttcacttgccttgtaaccactcc 95 | >AE000660|TRAV27*01|Homo 96 | gaaaatctcactgtgtactgcaactcctca 97 | >X04957|TRAV27*02|Homo 98 | gaaaatctcactgtgtactgcaactcctca 99 | >D13075|TRAV27*03|Homo 100 | gaaaatctcactgtgtactgcaactcctca 101 | >AE000660|TRAV29/DV5*01|Homo 102 | agaatttctattctgaactgtgactatact 103 | >S81645|TRAV29/DV5*02|Homo 104 | agaatttctattctgaactgtgactatact 105 | >AE000658|TRAV3*01|Homo 106 | aatcctctgactgtgaaatgcacctattca 107 | >AE000660|TRAV30*01|Homo 108 | gaagatgctgtcatcaactgcagttcctcc 109 | >X58768|TRAV30*02|Homo 110 | gaagatgctgtcaccaactgcagttcctcc 111 | >L06883|TRAV30*03|Homo 112 | gaagatgctgtcatcaactgcagttcctcc 113 | >U32537|TRAV30*04|Homo 114 | gaagatgctgtcatcaactgcagttcctcc 115 | >AE000660|TRAV34*01|Homo 116 | aagaatctcaccataaactgcacgtcatca 117 | >AE000660|TRAV35*01|Homo 118 | gaagatgtctccatgaactgcacttcttca 119 | >X58738|TRAV35*02|Homo 120 | gaagatgtctccatgaactgcacttcttca 121 | >AE000660|TRAV36/DV7*01|Homo 122 | gacaccgtaactctcaattgcagttatgaa 123 | >X61070|TRAV36/DV7*02|Homo 124 | gacactgtaactctcaattgcagttatgaa 125 | >X58767|TRAV36/DV7*03|Homo 126 | gacactgtaactcccaattgcagttatgaa 127 | >Z46643|TRAV36/DV7*04|Homo 128 | gacactgtaactctcaattgcagttatgaa 129 | >AE000661|TRAV38-1*01|Homo 130 | gagactgtgaccctgagttgcacatatgac 131 | >M64355|TRAV38-1*02|Homo 132 | gagactgtgaccctgagttgcacatatgac 133 | >M95394|TRAV38-1*03|Homo 134 | gagactgtgaccctgagttgcacatatgac 135 | >L06880|TRAV38-1*04|Homo 136 | gagactgtgaccctgagttgcacatatgac 137 | >AE000661|TRAV38-2/DV8*01|Homo 138 | gagaccgtgaccctgagctgcacatatgac 139 | >AE000661|TRAV39*01|Homo 140 | aaaaactataccatctactgcaattattca 141 | >AE000658|TRAV4*01|Homo 142 | caagaagtgaacataacctgtagccacaac 143 | >X73521|TRAV40*01|Homo 144 | gcatctgtgactatgaactgcacatacaca 145 | >AE000661|TRAV41*01|Homo 146 | gaatttatcacaatcaactgcagttactcg 147 | >AE000659|TRAV5*01|Homo 148 | gacagctccgttataaactgcacttacaca 149 | >AE000659|TRAV6*01|Homo 150 | aaaacggccaccctgacctgcaactataca 151 | >X58747|TRAV6*02|Homo 152 | aaaacggccaccctgacctgcaactataca 153 | >Z49060|TRAV6*03|Homo 154 | aaaacggccaccctgacctgcaactataca 155 | >Y10409|TRAV6*04|Homo 156 | aaaacggccaccctgacctgcaactataca 157 | >Y10410|TRAV6*05|Homo 158 | aaaacggccaccctgacctgcaactatacg 159 | >U32542|TRAV6*06|Homo 160 | aaaacggccaccctgacctgcaactataca 161 | >AE000659|TRAV7*01|Homo 162 | gacgttgcctccatgagctgcacgtactct 163 | >AE000659|TRAV8-1*01|Homo 164 | gcctcactggagttgggatgcaactattcc 165 | >U32520|TRAV8-1*02|Homo 166 | gcctcactggagttgggatgcaactattcc 167 | >AE000659|TRAV8-2*01|Homo 168 | accccggtgctgctgaggtgcaactactca 169 | >M17650|TRAV8-2*02|Homo 170 | accccggtgctgctgaggtgcaactactca 171 | >AE000659|TRAV8-3*01|Homo 172 | gcctcactggagttgagatgtaactattcc 173 | >M35617|TRAV8-3*02|Homo 174 | gcctcactggagttgagatgtaactattcc 175 | >L06885|TRAV8-3*03|Homo 176 | gcctcactggagttgagatgtaactattcc 177 | >AE000659|TRAV8-4*01|Homo 178 | gccctggttctgctgaggtgcaactactca 179 | >M12423|TRAV8-4*02|Homo 180 | gccctggttctgctgaggtgcaactactca 181 | >D13077|TRAV8-4*03|Homo 182 | gccctggttctgctgaggtgcaactactca 183 | >M12959|TRAV8-4*04|Homo 184 | gccctggttctgctgaggtgcaactactca 185 | >X63455|TRAV8-4*05|Homo 186 | gccctggttctgctgaggtgcaactactca 187 | >X02850|TRAV8-6*01|Homo 188 | gcccctgtggagctgaggtgcaactactca 189 | >AE000659|TRAV8-6*02|Homo 190 | gcccctgtggagctgaggtgcaactactca 191 | >AE000660|TRAV8-7*01|Homo 192 | gcccctctggaactgaagtgcaactattcc 193 | >AE000659|TRAV9-1*01|Homo 194 | gattccctgattgtgaactgctcctatgaa 195 | >AE000659|TRAV9-2*01|Homo 196 | gccttcctgactataaactgcacgtacaca 197 | >X58745|TRAV9-2*02|Homo 198 | gccttcctgactataaactgcacgtacaca 199 | >L06881|TRAV9-2*03|Homo 200 | gccttcctgactataaactgcacgtacaca 201 | >L06882|TRAV9-2*04|Homo 202 | gccttcctgactataaactgcacgtacaca 203 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR1-front.fa.amb: -------------------------------------------------------------------------------- 1 | 3030 101 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR1-front.fa.ann: -------------------------------------------------------------------------------- 1 | 3030 101 11 2 | 0 AE000658|TRAV1-1*01|Homo (null) 3 | 0 30 0 4 | 0 X04939|TRAV1-1*02|Homo (null) 5 | 30 30 0 6 | 0 AE000658|TRAV1-2*01|Homo (null) 7 | 60 30 0 8 | 0 U32544|TRAV1-2*02|Homo (null) 9 | 90 30 0 10 | 0 AE000659|TRAV10*01|Homo (null) 11 | 120 30 0 12 | 0 AE000659|TRAV11*01|Homo (null) 13 | 150 30 0 14 | 0 AE000659|TRAV12-1*01|Homo (null) 15 | 180 30 0 16 | 0 M17657|TRAV12-1*02|Homo (null) 17 | 210 30 0 18 | 0 AE000659|TRAV12-2*01|Homo (null) 19 | 240 30 0 20 | 0 M81774|TRAV12-2*02|Homo (null) 21 | 270 30 0 22 | 0 X04946|TRAV12-2*03|Homo (null) 23 | 300 30 0 24 | 0 AE000659|TRAV12-3*01|Homo (null) 25 | 330 30 0 26 | 0 M17656|TRAV12-3*02|Homo (null) 27 | 360 30 0 28 | 0 AE000659|TRAV13-1*01|Homo (null) 29 | 390 30 0 30 | 0 X04954|TRAV13-1*02|Homo (null) 31 | 420 30 0 32 | 0 L11162|TRAV13-1*03|Homo (null) 33 | 450 30 0 34 | 0 AE000659|TRAV13-2*01|Homo (null) 35 | 480 30 0 36 | 0 M17658|TRAV13-2*02|Homo (null) 37 | 510 30 0 38 | 0 M21626|TRAV14/DV4*01|Homo (null) 39 | 540 30 0 40 | 0 AE000659|TRAV14/DV4*02|Homo (null) 41 | 570 30 0 42 | 0 M21624|TRAV14/DV4*03|Homo (null) 43 | 600 30 0 44 | 0 L09758|TRAV14/DV4*04|Homo (null) 45 | 630 30 0 46 | 0 AE000659|TRAV16*01|Homo (null) 47 | 660 30 0 48 | 0 AE000660|TRAV17*01|Homo (null) 49 | 690 30 0 50 | 0 AE000660|TRAV18*01|Homo (null) 51 | 720 30 0 52 | 0 AE000660|TRAV19*01|Homo (null) 53 | 750 30 0 54 | 0 AE000658|TRAV2*01|Homo (null) 55 | 780 30 0 56 | 0 M17659|TRAV2*02|Homo (null) 57 | 810 30 0 58 | 0 AE000660|TRAV20*01|Homo (null) 59 | 840 30 0 60 | 0 X68696|TRAV20*02|Homo (null) 61 | 870 30 0 62 | 0 S60789|TRAV20*03|Homo (null) 63 | 900 30 0 64 | 0 X70305|TRAV20*04|Homo (null) 65 | 930 30 0 66 | 0 AE000660|TRAV21*01|Homo (null) 67 | 960 30 0 68 | 0 X58736|TRAV21*02|Homo (null) 69 | 990 30 0 70 | 0 AE000660|TRAV22*01|Homo (null) 71 | 1020 30 0 72 | 0 AE000660|TRAV23/DV6*01|Homo (null) 73 | 1050 30 0 74 | 0 M17660|TRAV23/DV6*02|Homo (null) 75 | 1080 30 0 76 | 0 M97704|TRAV23/DV6*03|Homo (null) 77 | 1110 30 0 78 | 0 Y10411|TRAV23/DV6*04|Homo (null) 79 | 1140 30 0 80 | 0 AE000660|TRAV24*01|Homo (null) 81 | 1170 30 0 82 | 0 M17661|TRAV24*02|Homo (null) 83 | 1200 30 0 84 | 0 AE000660|TRAV25*01|Homo (null) 85 | 1230 30 0 86 | 0 AE000660|TRAV26-1*01|Homo (null) 87 | 1260 30 0 88 | 0 M27371|TRAV26-1*02|Homo (null) 89 | 1290 30 0 90 | 0 L06886|TRAV26-1*03|Homo (null) 91 | 1320 30 0 92 | 0 AE000660|TRAV26-2*01|Homo (null) 93 | 1350 30 0 94 | 0 L11160|TRAV26-2*02|Homo (null) 95 | 1380 30 0 96 | 0 AE000660|TRAV27*01|Homo (null) 97 | 1410 30 0 98 | 0 X04957|TRAV27*02|Homo (null) 99 | 1440 30 0 100 | 0 D13075|TRAV27*03|Homo (null) 101 | 1470 30 0 102 | 0 AE000660|TRAV29/DV5*01|Homo (null) 103 | 1500 30 0 104 | 0 S81645|TRAV29/DV5*02|Homo (null) 105 | 1530 30 0 106 | 0 AE000658|TRAV3*01|Homo (null) 107 | 1560 30 0 108 | 0 AE000660|TRAV30*01|Homo (null) 109 | 1590 30 0 110 | 0 X58768|TRAV30*02|Homo (null) 111 | 1620 30 0 112 | 0 L06883|TRAV30*03|Homo (null) 113 | 1650 30 0 114 | 0 U32537|TRAV30*04|Homo (null) 115 | 1680 30 0 116 | 0 AE000660|TRAV34*01|Homo (null) 117 | 1710 30 0 118 | 0 AE000660|TRAV35*01|Homo (null) 119 | 1740 30 0 120 | 0 X58738|TRAV35*02|Homo (null) 121 | 1770 30 0 122 | 0 AE000660|TRAV36/DV7*01|Homo (null) 123 | 1800 30 0 124 | 0 X61070|TRAV36/DV7*02|Homo (null) 125 | 1830 30 0 126 | 0 X58767|TRAV36/DV7*03|Homo (null) 127 | 1860 30 0 128 | 0 Z46643|TRAV36/DV7*04|Homo (null) 129 | 1890 30 0 130 | 0 AE000661|TRAV38-1*01|Homo (null) 131 | 1920 30 0 132 | 0 M64355|TRAV38-1*02|Homo (null) 133 | 1950 30 0 134 | 0 M95394|TRAV38-1*03|Homo (null) 135 | 1980 30 0 136 | 0 L06880|TRAV38-1*04|Homo (null) 137 | 2010 30 0 138 | 0 AE000661|TRAV38-2/DV8*01|Homo (null) 139 | 2040 30 0 140 | 0 AE000661|TRAV39*01|Homo (null) 141 | 2070 30 0 142 | 0 AE000658|TRAV4*01|Homo (null) 143 | 2100 30 0 144 | 0 X73521|TRAV40*01|Homo (null) 145 | 2130 30 0 146 | 0 AE000661|TRAV41*01|Homo (null) 147 | 2160 30 0 148 | 0 AE000659|TRAV5*01|Homo (null) 149 | 2190 30 0 150 | 0 AE000659|TRAV6*01|Homo (null) 151 | 2220 30 0 152 | 0 X58747|TRAV6*02|Homo (null) 153 | 2250 30 0 154 | 0 Z49060|TRAV6*03|Homo (null) 155 | 2280 30 0 156 | 0 Y10409|TRAV6*04|Homo (null) 157 | 2310 30 0 158 | 0 Y10410|TRAV6*05|Homo (null) 159 | 2340 30 0 160 | 0 U32542|TRAV6*06|Homo (null) 161 | 2370 30 0 162 | 0 AE000659|TRAV7*01|Homo (null) 163 | 2400 30 0 164 | 0 AE000659|TRAV8-1*01|Homo (null) 165 | 2430 30 0 166 | 0 U32520|TRAV8-1*02|Homo (null) 167 | 2460 30 0 168 | 0 AE000659|TRAV8-2*01|Homo (null) 169 | 2490 30 0 170 | 0 M17650|TRAV8-2*02|Homo (null) 171 | 2520 30 0 172 | 0 AE000659|TRAV8-3*01|Homo (null) 173 | 2550 30 0 174 | 0 M35617|TRAV8-3*02|Homo (null) 175 | 2580 30 0 176 | 0 L06885|TRAV8-3*03|Homo (null) 177 | 2610 30 0 178 | 0 AE000659|TRAV8-4*01|Homo (null) 179 | 2640 30 0 180 | 0 M12423|TRAV8-4*02|Homo (null) 181 | 2670 30 0 182 | 0 D13077|TRAV8-4*03|Homo (null) 183 | 2700 30 0 184 | 0 M12959|TRAV8-4*04|Homo (null) 185 | 2730 30 0 186 | 0 X63455|TRAV8-4*05|Homo (null) 187 | 2760 30 0 188 | 0 X02850|TRAV8-6*01|Homo (null) 189 | 2790 30 0 190 | 0 AE000659|TRAV8-6*02|Homo (null) 191 | 2820 30 0 192 | 0 AE000660|TRAV8-7*01|Homo (null) 193 | 2850 30 0 194 | 0 AE000659|TRAV9-1*01|Homo (null) 195 | 2880 30 0 196 | 0 AE000659|TRAV9-2*01|Homo (null) 197 | 2910 30 0 198 | 0 X58745|TRAV9-2*02|Homo (null) 199 | 2940 30 0 200 | 0 L06881|TRAV9-2*03|Homo (null) 201 | 2970 30 0 202 | 0 L06882|TRAV9-2*04|Homo (null) 203 | 3000 30 0 204 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR1-front.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-CDR1-front.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR1-front.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-CDR1-front.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR1-front.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-CDR1-front.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR2-back.fa: -------------------------------------------------------------------------------- 1 | >AE000658|TRAV1-1*01|Homo 2 | gaggagacaggtcgtttttcttcattcctt 3 | >X04939|TRAV1-1*02|Homo 4 | gaggagacaggtcgtttttcttcattcctt 5 | >AE000658|TRAV1-2*01|Homo 6 | gaggagaaaggtcgtttttcttcattcctt 7 | >AE000659|TRAV10*01|Homo 8 | aagtcgaacggaagatatacagcaactctg 9 | >AE000659|TRAV11*01|Homo 10 | cagggagacaaatattttaaagaactgctt 11 | >AE000659|TRAV12-1*01|Homo 12 | gaagatggaaggtttacagcacagctcaat 13 | >M17657|TRAV12-1*02|Homo 14 | gaagatggaaggtttacagcacacgtcaat 15 | >AE000659|TRAV12-2*01|Homo 16 | aaagaagatggaaggtttacagcacagctc 17 | >M81774|TRAV12-2*02|Homo 18 | aaagaagatggaaggtttacagcacagctc 19 | >X04946|TRAV12-2*03|Homo 20 | aaagaagatggaaggtttacagcacagctc 21 | >AE000659|TRAV12-3*01|Homo 22 | aaagaagatggaaggtttacagcacaggtc 23 | >M17656|TRAV12-3*02|Homo 24 | aaagaagatggaaggtttacagcacaggtc 25 | >AE000659|TRAV13-1*01|Homo 26 | aagaaagaccaacgaattgctgttacattg 27 | >X04954|TRAV13-1*02|Homo 28 | aagaaagaccaacgaattgctgttacattg 29 | >L11162|TRAV13-1*03|Homo 30 | aagaaagaccaacgaattgctgttacattg 31 | >AE000659|TRAV13-2*01|Homo 32 | aggcaaggccaaagagtcaccgttttattg 33 | >M17658|TRAV13-2*02|Homo 34 | aggcaaggccaaagagtcaccgttttattg 35 | >M21626|TRAV14/DV4*01|Homo 36 | gcaacagaaggtcgctactcattgaatttc 37 | >AE000659|TRAV14/DV4*02|Homo 38 | gcaacagaaggtcgctactcattgaatttc 39 | >M21624|TRAV14/DV4*03|Homo 40 | gcaacagaaggtcgctactcattgaatttc 41 | >L09758|TRAV14/DV4*04|Homo 42 | gcaacagaaggtcgctactcattgaatttc 43 | >AE000659|TRAV16*01|Homo 44 | gagagcatcaaaggcttcactgctgacctt 45 | >AE000660|TRAV17*01|Homo 46 | aaacacagtggaagattaagagtcacgctt 47 | >AE000660|TRAV18*01|Homo 48 | acggacagcagaggttttcaggccagtcct 49 | >AE000660|TRAV19*01|Homo 50 | gaaataagtggtcggtattcttggaacttc 51 | >AE000658|TRAV2*01|Homo 52 | tctcagcagggacgatacaacatgacctat 53 | >M17659|TRAV2*02|Homo 54 | tctcagcagggacgatacaacatgacctat 55 | >AE000660|TRAV20*01|Homo 56 | aaggagaaagaaaggctaaaagccacatta 57 | >X68696|TRAV20*02|Homo 58 | aaggagaaagaaaggctaaaagccacatta 59 | >S60789|TRAV20*03|Homo 60 | aaggagaaagaaaggctaaaagccacatta 61 | >X70305|TRAV20*04|Homo 62 | aaggagaaagaaaggctaaaagccacatta 63 | >AE000660|TRAV21*01|Homo 64 | caaacaagtggaagacttaatgcctcgctg 65 | >X58736|TRAV21*02|Homo 66 | caaacaagtggaagacttaatgcctcgctg 67 | >AE000660|TRAV22*01|Homo 68 | aaacagaatggaagattaagcgccacgact 69 | >AE000660|TRAV23/DV6*01|Homo 70 | aagaaagaaggaagattcacaatctccttc 71 | >M17660|TRAV23/DV6*02|Homo 72 | aagaaagaaggaagattcacaatctccttc 73 | >M97704|TRAV23/DV6*03|Homo 74 | aagaaagaaggaagattcacaatctccttc 75 | >Y10411|TRAV23/DV6*04|Homo 76 | aagaaagaaggaagattcacaatctccttc 77 | >AE000660|TRAV24*01|Homo 78 | aagaagaaaggacgaataagtgccactctt 79 | >M17661|TRAV24*02|Homo 80 | aagaagaaaggacgaataagtgccactctt 81 | >AE000660|TRAV25*01|Homo 82 | aagaagcagaaaagactgacatttcagttt 83 | >AE000660|TRAV26-1*01|Homo 84 | gaaaccaatgaaatggcctctctgatcatc 85 | >M27371|TRAV26-1*02|Homo 86 | gaaaccaatgaaatggcctctctgatcatc 87 | >L06886|TRAV26-1*03|Homo 88 | gaaaccaatgaaatggcctctctgatcatc 89 | >AE000660|TRAV26-2*01|Homo 90 | gtgaacaacagaatggcctctctggcaatc 91 | >L11160|TRAV26-2*02|Homo 92 | gtgaacaacagaatggcctgtgtggcaatc 93 | >AE000660|TRAV27*01|Homo 94 | aagaagctgaagagactaacctttcagttt 95 | >X04957|TRAV27*02|Homo 96 | aagaagctgaagagactaacctttcagttt 97 | >D13075|TRAV27*03|Homo 98 | aagaagctgaagagactaacctttcagttt 99 | >AE000660|TRAV29/DV5*01|Homo 100 | aatgaagatggaagattcactgtcttctta 101 | >S81645|TRAV29/DV5*02|Homo 102 | aatgaagatggaagattcactgttttctta 103 | >AE000658|TRAV3*01|Homo 104 | aaaggcagctatggctttgaagctgaattt 105 | >AE000660|TRAV30*01|Homo 106 | aagggtcatgaaaaaatatctgcttcattt 107 | >X58768|TRAV30*02|Homo 108 | atgcgtcgtgaaaaaatatctgcttcattt 109 | >L06883|TRAV30*03|Homo 110 | aagggtcatgaaaaaatatctgcttcattt 111 | >U32537|TRAV30*04|Homo 112 | aagcgtcatgaaaaaatatctgcttcattt 113 | >AE000660|TRAV34*01|Homo 114 | aaaagtcatgaaaagataactgccaagttg 115 | >AE000660|TRAV35*01|Homo 116 | acctcaaatggaagactgactgctcagttt 117 | >X58738|TRAV35*02|Homo 118 | acctcaaatggaagactgactgctcagttt 119 | >AE000660|TRAV36/DV7*01|Homo 120 | aagaagtcaggaagactaagtagcatatta 121 | >X61070|TRAV36/DV7*02|Homo 122 | aagaagtcaggaagactaagtagcatatta 123 | >X58767|TRAV36/DV7*03|Homo 124 | aagaagtcaggaagactaagtagcatatta 125 | >Z46643|TRAV36/DV7*04|Homo 126 | aagaagtcaggaagactaagtagcatatta 127 | >AE000661|TRAV38-1*01|Homo 128 | gcaacggagaatcgtttctctgtgaacttc 129 | >M64355|TRAV38-1*02|Homo 130 | gcaacggagaatcgtttctctgtgaacttc 131 | >M95394|TRAV38-1*03|Homo 132 | gcaacggagaatcgtttctctgtgaacttc 133 | >L06880|TRAV38-1*04|Homo 134 | gcaacggagaatcgtttctctgtgaacttc 135 | >AE000661|TRAV38-2/DV8*01|Homo 136 | gcaacagagaatcgtttctctgtgaacttc 137 | >AE000661|TRAV39*01|Homo 138 | aagcaggagggacgattaatggcctcactt 139 | >AE000658|TRAV4*01|Homo 140 | gttacaaacgaagtggcctccctgtttatc 141 | >X73521|TRAV40*01|Homo 142 | aacagcaaaaacttcggaggcggaaatatt 143 | >AE000661|TRAV41*01|Homo 144 | aagaagcatggaagattaattgccacaata 145 | >AE000659|TRAV5*01|Homo 146 | aaacaagaccaaagactcactgttctattg 147 | >AE000659|TRAV6*01|Homo 148 | aaaaggaaagaaagactgaaggtcaccttt 149 | >X58747|TRAV6*02|Homo 150 | aaaaggaaagaaagactgaaggtcaccttt 151 | >Z49060|TRAV6*03|Homo 152 | aaaaggaaagaaagactgaaggtcaccttt 153 | >Y10409|TRAV6*04|Homo 154 | aaaaggaaagaaagactgaaggtcaccttt 155 | >Y10410|TRAV6*05|Homo 156 | aaaaggaaagaaagactgaaggtcaccttt 157 | >U32542|TRAV6*06|Homo 158 | aaaaggaaagaaagactgaaggtcaccttt 159 | >AE000659|TRAV7*01|Homo 160 | aagcagaaaggaagactaaatgctacatta 161 | >AE000659|TRAV8-1*01|Homo 162 | aaaggcatcaagggctttgaggctgaattt 163 | >U32520|TRAV8-1*02|Homo 164 | aaaggcatcaagggcgttgaggctgaattt 165 | >AE000659|TRAV8-2*01|Homo 166 | aaaggcatcaacggttttgaggctgaattt 167 | >M17650|TRAV8-2*02|Homo 168 | aaaggcatcaacggttttgaggctgaattt 169 | >AE000659|TRAV8-3*01|Homo 170 | caaggcattaaaggctttgaggctgaattt 171 | >M35617|TRAV8-3*02|Homo 172 | caaggcattaaaggctttgaggctgaattt 173 | >L06885|TRAV8-3*03|Homo 174 | caaggtattaaaggctttgaggctgaattt 175 | >AE000659|TRAV8-4*01|Homo 176 | aaaggcatcaacggttttgaggctgaattt 177 | >M12423|TRAV8-4*02|Homo 178 | aaaggcatcaacggttttgaggctgaattt 179 | >D13077|TRAV8-4*03|Homo 180 | aaaggcatcaacggttttgaggctgaattt 181 | >M12959|TRAV8-4*04|Homo 182 | aaaggcatcaacggttttgaggctgaattt 183 | >X63455|TRAV8-4*05|Homo 184 | aaaggaatcaacggttttgaggctgaattt 185 | >X02850|TRAV8-6*01|Homo 186 | gaaagcatcaacggttttgaggctgaattt 187 | >AE000659|TRAV8-6*02|Homo 188 | aaaggcatcaacggttttgaggctgaattt 189 | >AE000660|TRAV8-7*01|Homo 190 | aaaggcatcagaggttttgaggctgaattt 191 | >AE000659|TRAV9-1*01|Homo 192 | ggaaggaacaaaggttttgaagccatgtac 193 | >AE000659|TRAV9-2*01|Homo 194 | ggaagcaacaaaggttttgaagccacatac 195 | >X58745|TRAV9-2*02|Homo 196 | ggaagcaacaaaggttttgaagccacatac 197 | >L06881|TRAV9-2*03|Homo 198 | ggaagcaacaaaggttttgaagccacatac 199 | >L06882|TRAV9-2*04|Homo 200 | ggaagcaacaaaggttttgaagccacatac 201 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR2-back.fa.amb: -------------------------------------------------------------------------------- 1 | 3000 100 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR2-back.fa.ann: -------------------------------------------------------------------------------- 1 | 3000 100 11 2 | 0 AE000658|TRAV1-1*01|Homo (null) 3 | 0 30 0 4 | 0 X04939|TRAV1-1*02|Homo (null) 5 | 30 30 0 6 | 0 AE000658|TRAV1-2*01|Homo (null) 7 | 60 30 0 8 | 0 AE000659|TRAV10*01|Homo (null) 9 | 90 30 0 10 | 0 AE000659|TRAV11*01|Homo (null) 11 | 120 30 0 12 | 0 AE000659|TRAV12-1*01|Homo (null) 13 | 150 30 0 14 | 0 M17657|TRAV12-1*02|Homo (null) 15 | 180 30 0 16 | 0 AE000659|TRAV12-2*01|Homo (null) 17 | 210 30 0 18 | 0 M81774|TRAV12-2*02|Homo (null) 19 | 240 30 0 20 | 0 X04946|TRAV12-2*03|Homo (null) 21 | 270 30 0 22 | 0 AE000659|TRAV12-3*01|Homo (null) 23 | 300 30 0 24 | 0 M17656|TRAV12-3*02|Homo (null) 25 | 330 30 0 26 | 0 AE000659|TRAV13-1*01|Homo (null) 27 | 360 30 0 28 | 0 X04954|TRAV13-1*02|Homo (null) 29 | 390 30 0 30 | 0 L11162|TRAV13-1*03|Homo (null) 31 | 420 30 0 32 | 0 AE000659|TRAV13-2*01|Homo (null) 33 | 450 30 0 34 | 0 M17658|TRAV13-2*02|Homo (null) 35 | 480 30 0 36 | 0 M21626|TRAV14/DV4*01|Homo (null) 37 | 510 30 0 38 | 0 AE000659|TRAV14/DV4*02|Homo (null) 39 | 540 30 0 40 | 0 M21624|TRAV14/DV4*03|Homo (null) 41 | 570 30 0 42 | 0 L09758|TRAV14/DV4*04|Homo (null) 43 | 600 30 0 44 | 0 AE000659|TRAV16*01|Homo (null) 45 | 630 30 0 46 | 0 AE000660|TRAV17*01|Homo (null) 47 | 660 30 0 48 | 0 AE000660|TRAV18*01|Homo (null) 49 | 690 30 0 50 | 0 AE000660|TRAV19*01|Homo (null) 51 | 720 30 0 52 | 0 AE000658|TRAV2*01|Homo (null) 53 | 750 30 0 54 | 0 M17659|TRAV2*02|Homo (null) 55 | 780 30 0 56 | 0 AE000660|TRAV20*01|Homo (null) 57 | 810 30 0 58 | 0 X68696|TRAV20*02|Homo (null) 59 | 840 30 0 60 | 0 S60789|TRAV20*03|Homo (null) 61 | 870 30 0 62 | 0 X70305|TRAV20*04|Homo (null) 63 | 900 30 0 64 | 0 AE000660|TRAV21*01|Homo (null) 65 | 930 30 0 66 | 0 X58736|TRAV21*02|Homo (null) 67 | 960 30 0 68 | 0 AE000660|TRAV22*01|Homo (null) 69 | 990 30 0 70 | 0 AE000660|TRAV23/DV6*01|Homo (null) 71 | 1020 30 0 72 | 0 M17660|TRAV23/DV6*02|Homo (null) 73 | 1050 30 0 74 | 0 M97704|TRAV23/DV6*03|Homo (null) 75 | 1080 30 0 76 | 0 Y10411|TRAV23/DV6*04|Homo (null) 77 | 1110 30 0 78 | 0 AE000660|TRAV24*01|Homo (null) 79 | 1140 30 0 80 | 0 M17661|TRAV24*02|Homo (null) 81 | 1170 30 0 82 | 0 AE000660|TRAV25*01|Homo (null) 83 | 1200 30 0 84 | 0 AE000660|TRAV26-1*01|Homo (null) 85 | 1230 30 0 86 | 0 M27371|TRAV26-1*02|Homo (null) 87 | 1260 30 0 88 | 0 L06886|TRAV26-1*03|Homo (null) 89 | 1290 30 0 90 | 0 AE000660|TRAV26-2*01|Homo (null) 91 | 1320 30 0 92 | 0 L11160|TRAV26-2*02|Homo (null) 93 | 1350 30 0 94 | 0 AE000660|TRAV27*01|Homo (null) 95 | 1380 30 0 96 | 0 X04957|TRAV27*02|Homo (null) 97 | 1410 30 0 98 | 0 D13075|TRAV27*03|Homo (null) 99 | 1440 30 0 100 | 0 AE000660|TRAV29/DV5*01|Homo (null) 101 | 1470 30 0 102 | 0 S81645|TRAV29/DV5*02|Homo (null) 103 | 1500 30 0 104 | 0 AE000658|TRAV3*01|Homo (null) 105 | 1530 30 0 106 | 0 AE000660|TRAV30*01|Homo (null) 107 | 1560 30 0 108 | 0 X58768|TRAV30*02|Homo (null) 109 | 1590 30 0 110 | 0 L06883|TRAV30*03|Homo (null) 111 | 1620 30 0 112 | 0 U32537|TRAV30*04|Homo (null) 113 | 1650 30 0 114 | 0 AE000660|TRAV34*01|Homo (null) 115 | 1680 30 0 116 | 0 AE000660|TRAV35*01|Homo (null) 117 | 1710 30 0 118 | 0 X58738|TRAV35*02|Homo (null) 119 | 1740 30 0 120 | 0 AE000660|TRAV36/DV7*01|Homo (null) 121 | 1770 30 0 122 | 0 X61070|TRAV36/DV7*02|Homo (null) 123 | 1800 30 0 124 | 0 X58767|TRAV36/DV7*03|Homo (null) 125 | 1830 30 0 126 | 0 Z46643|TRAV36/DV7*04|Homo (null) 127 | 1860 30 0 128 | 0 AE000661|TRAV38-1*01|Homo (null) 129 | 1890 30 0 130 | 0 M64355|TRAV38-1*02|Homo (null) 131 | 1920 30 0 132 | 0 M95394|TRAV38-1*03|Homo (null) 133 | 1950 30 0 134 | 0 L06880|TRAV38-1*04|Homo (null) 135 | 1980 30 0 136 | 0 AE000661|TRAV38-2/DV8*01|Homo (null) 137 | 2010 30 0 138 | 0 AE000661|TRAV39*01|Homo (null) 139 | 2040 30 0 140 | 0 AE000658|TRAV4*01|Homo (null) 141 | 2070 30 0 142 | 0 X73521|TRAV40*01|Homo (null) 143 | 2100 30 0 144 | 0 AE000661|TRAV41*01|Homo (null) 145 | 2130 30 0 146 | 0 AE000659|TRAV5*01|Homo (null) 147 | 2160 30 0 148 | 0 AE000659|TRAV6*01|Homo (null) 149 | 2190 30 0 150 | 0 X58747|TRAV6*02|Homo (null) 151 | 2220 30 0 152 | 0 Z49060|TRAV6*03|Homo (null) 153 | 2250 30 0 154 | 0 Y10409|TRAV6*04|Homo (null) 155 | 2280 30 0 156 | 0 Y10410|TRAV6*05|Homo (null) 157 | 2310 30 0 158 | 0 U32542|TRAV6*06|Homo (null) 159 | 2340 30 0 160 | 0 AE000659|TRAV7*01|Homo (null) 161 | 2370 30 0 162 | 0 AE000659|TRAV8-1*01|Homo (null) 163 | 2400 30 0 164 | 0 U32520|TRAV8-1*02|Homo (null) 165 | 2430 30 0 166 | 0 AE000659|TRAV8-2*01|Homo (null) 167 | 2460 30 0 168 | 0 M17650|TRAV8-2*02|Homo (null) 169 | 2490 30 0 170 | 0 AE000659|TRAV8-3*01|Homo (null) 171 | 2520 30 0 172 | 0 M35617|TRAV8-3*02|Homo (null) 173 | 2550 30 0 174 | 0 L06885|TRAV8-3*03|Homo (null) 175 | 2580 30 0 176 | 0 AE000659|TRAV8-4*01|Homo (null) 177 | 2610 30 0 178 | 0 M12423|TRAV8-4*02|Homo (null) 179 | 2640 30 0 180 | 0 D13077|TRAV8-4*03|Homo (null) 181 | 2670 30 0 182 | 0 M12959|TRAV8-4*04|Homo (null) 183 | 2700 30 0 184 | 0 X63455|TRAV8-4*05|Homo (null) 185 | 2730 30 0 186 | 0 X02850|TRAV8-6*01|Homo (null) 187 | 2760 30 0 188 | 0 AE000659|TRAV8-6*02|Homo (null) 189 | 2790 30 0 190 | 0 AE000660|TRAV8-7*01|Homo (null) 191 | 2820 30 0 192 | 0 AE000659|TRAV9-1*01|Homo (null) 193 | 2850 30 0 194 | 0 AE000659|TRAV9-2*01|Homo (null) 195 | 2880 30 0 196 | 0 X58745|TRAV9-2*02|Homo (null) 197 | 2910 30 0 198 | 0 L06881|TRAV9-2*03|Homo (null) 199 | 2940 30 0 200 | 0 L06882|TRAV9-2*04|Homo (null) 201 | 2970 30 0 202 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR2-back.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-CDR2-back.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR2-back.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-CDR2-back.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR2-back.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-CDR2-back.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR2-front.fa: -------------------------------------------------------------------------------- 1 | >AE000658|TRAV1-1*01|Homo 2 | gatggcggagcacccacatttctttcttac 3 | >X04939|TRAV1-1*02|Homo 4 | gatggcggagcacccacatttctttcttac 5 | >AE000658|TRAV1-2*01|Homo 6 | gctggcgaagcacccacatttctgtcttac 7 | >U32544|TRAV1-2*02|Homo 8 | gctggcgaagcacccacatttctgtcttac 9 | >AE000659|TRAV10*01|Homo 10 | actgggagaggtcctgtttccctgacaatc 11 | >AE000659|TRAV11*01|Homo 12 | ccggggagaagacttgtgtctttgacctta 13 | >AE000659|TRAV12-1*01|Homo 14 | tgcaggaaagaacctaagttgctgatgtcc 15 | >M17657|TRAV12-1*02|Homo 16 | tgcaggaaagaacctaagttgctgatgtcc 17 | >AE000659|TRAV12-2*01|Homo 18 | tctgggaaaagccctgagttgataatgttc 19 | >M81774|TRAV12-2*02|Homo 20 | tctgggaaaagccctgagttgataatgtcc 21 | >X04946|TRAV12-2*03|Homo 22 | tctgggaaaagccctgagttgataatgtcc 23 | >AE000659|TRAV12-3*01|Homo 24 | tccagaaaaggccctgagttgctgatgtac 25 | >M17656|TRAV12-3*02|Homo 26 | tccagaataggccctgagttgctgatgtac 27 | >AE000659|TRAV13-1*01|Homo 28 | cttggaaaaggacctcagcttattatagac 29 | >X04954|TRAV13-1*02|Homo 30 | cttggaaaaagacctcagcttattatagac 31 | >L11162|TRAV13-1*03|Homo 32 | cttggaaaaagacctcagcttattatagac 33 | >AE000659|TRAV13-2*01|Homo 34 | tctggaaaaggtcctcaattcattatagac 35 | >M17658|TRAV13-2*02|Homo 36 | tctggaaaaggtcctcaattcattatagac 37 | >M21626|TRAV14/DV4*01|Homo 38 | agcagtggggaaatgatttttcttatttat 39 | >AE000659|TRAV14/DV4*02|Homo 40 | agcagtggggaaatgatttttcttatttat 41 | >M21624|TRAV14/DV4*03|Homo 42 | agcagtggggaaatgatttttcttatttat 43 | >L09758|TRAV14/DV4*04|Homo 44 | agcagtggggaaatgatttttcttatttat 45 | >AE000659|TRAV16*01|Homo 46 | tccagacaacgcctccagttactcttgaga 47 | >AE000660|TRAV17*01|Homo 48 | tcaggtagaggccttgtccacctaatttta 49 | >AE000660|TRAV18*01|Homo 50 | ctaaacaaagagcctgagctcctcctgaaa 51 | >AE000660|TRAV19*01|Homo 52 | ccaagtggagaattggttttccttattcgt 53 | >AE000658|TRAV2*01|Homo 54 | ccgggatgtgcaccaagactccttgttaaa 55 | >M17659|TRAV2*02|Homo 56 | ccgggatgtgcaccaagactccttgttaaa 57 | >AE000660|TRAV20*01|Homo 58 | cctgggaaaggccctgaattcctcttcacc 59 | >X68696|TRAV20*02|Homo 60 | cctgggaaaggccctgaattcctcttcacc 61 | >S60789|TRAV20*03|Homo 62 | cctgggaaaggccctgaattcctcttcacc 63 | >X70305|TRAV20*04|Homo 64 | cctgggaaaggccctgaattcctcttcacc 65 | >AE000660|TRAV21*01|Homo 66 | cctgggaaaggtctcacatctctgttgctt 67 | >X58736|TRAV21*02|Homo 68 | cctgggaaaggtctcacatctctgttgctt 69 | >AE000660|TRAV22*01|Homo 70 | ccttggggacagctcatcaacctgttttac 71 | >AE000660|TRAV23/DV6*01|Homo 72 | cctgggaaaggccctgcattattgatagcc 73 | >M17660|TRAV23/DV6*02|Homo 74 | cctgggaaaggccctgcattattgatagcc 75 | >M97704|TRAV23/DV6*03|Homo 76 | cctgggaaaggccctgcattattgatagcc 77 | >Y10411|TRAV23/DV6*04|Homo 78 | cctgggaaaggccctgcattattgatagcc 79 | >AE000660|TRAV24*01|Homo 80 | actgcaaaaagccccgaggccttgtttgta 81 | >M17661|TRAV24*02|Homo 82 | actgccaaaacacccgaggccttgtttgta 83 | >AE000660|TRAV25*01|Homo 84 | cctggtggacatcccgtttttttgatacag 85 | >AE000660|TRAV26-1*01|Homo 86 | cactcccaggggccacagtatatcattcat 87 | >M27371|TRAV26-1*02|Homo 88 | cactcccaggggccacagtatatcattcat 89 | >L06886|TRAV26-1*03|Homo 90 | cactcccaggggccacagaatatcattcat 91 | >AE000660|TRAV26-2*01|Homo 92 | ccctcccagggtccagagtacgtgattcat 93 | >L11160|TRAV26-2*02|Homo 94 | ccctcccagggtccagagtacgtgattcat 95 | >AE000660|TRAV27*01|Homo 96 | cctggggaaggtcctgtcctcctggtgaca 97 | >X04957|TRAV27*02|Homo 98 | cctggggaaggtcctgtcctcctggtgaca 99 | >D13075|TRAV27*03|Homo 100 | cctggggaaggtcctgtcctcctggtgaca 101 | >AE000660|TRAV29/DV5*01|Homo 102 | cctgctgaaggtcctacattcctgatatct 103 | >S81645|TRAV29/DV5*02|Homo 104 | cctgctgaaggtcctacattcctgatatct 105 | >AE000658|TRAV3*01|Homo 106 | cccaaccgaggcctccagttccttctgaaa 107 | >AE000660|TRAV30*01|Homo 108 | catggtgaagcacccgtcttcctgatgata 109 | >X58768|TRAV30*02|Homo 110 | catggtgaagcacccgtcttcctgatgata 111 | >L06883|TRAV30*03|Homo 112 | catggtgaagcacccgtcttcctgatgata 113 | >U32537|TRAV30*04|Homo 114 | catggtgaagcacccgtcttcctgatgata 115 | >AE000660|TRAV34*01|Homo 116 | tatggtgaaggtcttatcttcttgatgatg 117 | >AE000660|TRAV35*01|Homo 118 | cctggggaaggtcctgtcctcttgatagcc 119 | >X58738|TRAV35*02|Homo 120 | cctggggaaggtcctgtcctcttgatagcc 121 | >AE000660|TRAV36/DV7*01|Homo 122 | gaaaagaaagctcccacatttctatttatg 123 | >X61070|TRAV36/DV7*02|Homo 124 | gaaaagaaagctcccacatttctatttatg 125 | >X58767|TRAV36/DV7*03|Homo 126 | gaaaagaaagctcccacatttctatttatg 127 | >Z46643|TRAV36/DV7*04|Homo 128 | gaaaagaaagctcccacatttctatttatg 129 | >AE000661|TRAV38-1*01|Homo 130 | cccagcaggcagatgattctcgttattcgc 131 | >M64355|TRAV38-1*02|Homo 132 | cccagcaggcagatgattctcgttattcgc 133 | >M95394|TRAV38-1*03|Homo 134 | cccagcaggcagatgattctcgttattcgc 135 | >L06880|TRAV38-1*04|Homo 136 | cccagcaggcagatgattctcgttattcgc 137 | >AE000661|TRAV38-2/DV8*01|Homo 138 | cccagcaggcagatgattctcgttattcgc 139 | >AE000661|TRAV39*01|Homo 140 | cctgggaaaagtctggaatctctgtttgtg 141 | >AE000658|TRAV4*01|Homo 142 | cccagccaaggaccacgatttattattcaa 143 | >X73521|TRAV40*01|Homo 144 | cccagcaaacctctgcagcttcttcagaga 145 | >AE000661|TRAV41*01|Homo 146 | ccaggaggaggcattgtttccttgtttatg 147 | >AE000659|TRAV5*01|Homo 148 | cctggagcaggtctccagttgctgacgtat 149 | >AE000659|TRAV6*01|Homo 150 | ccaggaagaggccctgttttcttgctactc 151 | >X58747|TRAV6*02|Homo 152 | ccaggaagaggccctgttttcttgctactc 153 | >Z49060|TRAV6*03|Homo 154 | ccaggaagaggccctgttttcttgctactt 155 | >Y10409|TRAV6*04|Homo 156 | ccaggaagaggccctgttttcttgctactc 157 | >Y10410|TRAV6*05|Homo 158 | ccaggaagaggccctgttttcttgctactc 159 | >U32542|TRAV6*06|Homo 160 | ccaggaagaggccctgttttcttgctactc 161 | >AE000659|TRAV7*01|Homo 162 | acagggatgggtcccaaacacctattatcc 163 | >AE000659|TRAV8-1*01|Homo 164 | cctggtcaacaccttcagcttctcctcaag 165 | >U32520|TRAV8-1*02|Homo 166 | cctggtcaacaccttcagcttctcctcaag 167 | >AE000659|TRAV8-2*01|Homo 168 | cccaacaaaggactccagcttctcctgaag 169 | >M17650|TRAV8-2*02|Homo 170 | cccaacaaaggactccagcttctcctgaag 171 | >AE000659|TRAV8-3*01|Homo 172 | cccggccaaggcctccagctgctcctgaag 173 | >M35617|TRAV8-3*02|Homo 174 | cccggccaaggcctccagctgctcctgaag 175 | >L06885|TRAV8-3*03|Homo 176 | cccggccaaggcctccagctgctcctgaag 177 | >AE000659|TRAV8-4*01|Homo 178 | cccaaccaaggactccagcttctcctgaag 179 | >M12423|TRAV8-4*02|Homo 180 | cccaaccaaggactccagcttctcctgaag 181 | >D13077|TRAV8-4*03|Homo 182 | cccaaccaaggactccagcttctcctgaag 183 | >M12959|TRAV8-4*04|Homo 184 | cccaaccaaggactccagcttctcctgaag 185 | >X63455|TRAV8-4*05|Homo 186 | cccaaccaaggactccagcttctcctgaag 187 | >X02850|TRAV8-6*01|Homo 188 | cccaaccaaggactccagcttctcctgaag 189 | >AE000659|TRAV8-6*02|Homo 190 | cccaaccaaggactccagcttctcctgaag 191 | >AE000660|TRAV8-7*01|Homo 192 | tctagccaaagcctccagcttctcctcaaa 193 | >AE000659|TRAV9-1*01|Homo 194 | cctggagaaggtccacagctccacctgaaa 195 | >AE000659|TRAV9-2*01|Homo 196 | cctggagaaggtctacagctcctcctgaaa 197 | >X58745|TRAV9-2*02|Homo 198 | cctggagaaggtctacagctcctcctgaaa 199 | >L06881|TRAV9-2*03|Homo 200 | cctggagaaggtctacagctcctcctgaaa 201 | >L06882|TRAV9-2*04|Homo 202 | cctggagaaggtctacagctcctcctgaaa 203 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR2-front.fa.amb: -------------------------------------------------------------------------------- 1 | 3030 101 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR2-front.fa.ann: -------------------------------------------------------------------------------- 1 | 3030 101 11 2 | 0 AE000658|TRAV1-1*01|Homo (null) 3 | 0 30 0 4 | 0 X04939|TRAV1-1*02|Homo (null) 5 | 30 30 0 6 | 0 AE000658|TRAV1-2*01|Homo (null) 7 | 60 30 0 8 | 0 U32544|TRAV1-2*02|Homo (null) 9 | 90 30 0 10 | 0 AE000659|TRAV10*01|Homo (null) 11 | 120 30 0 12 | 0 AE000659|TRAV11*01|Homo (null) 13 | 150 30 0 14 | 0 AE000659|TRAV12-1*01|Homo (null) 15 | 180 30 0 16 | 0 M17657|TRAV12-1*02|Homo (null) 17 | 210 30 0 18 | 0 AE000659|TRAV12-2*01|Homo (null) 19 | 240 30 0 20 | 0 M81774|TRAV12-2*02|Homo (null) 21 | 270 30 0 22 | 0 X04946|TRAV12-2*03|Homo (null) 23 | 300 30 0 24 | 0 AE000659|TRAV12-3*01|Homo (null) 25 | 330 30 0 26 | 0 M17656|TRAV12-3*02|Homo (null) 27 | 360 30 0 28 | 0 AE000659|TRAV13-1*01|Homo (null) 29 | 390 30 0 30 | 0 X04954|TRAV13-1*02|Homo (null) 31 | 420 30 0 32 | 0 L11162|TRAV13-1*03|Homo (null) 33 | 450 30 0 34 | 0 AE000659|TRAV13-2*01|Homo (null) 35 | 480 30 0 36 | 0 M17658|TRAV13-2*02|Homo (null) 37 | 510 30 0 38 | 0 M21626|TRAV14/DV4*01|Homo (null) 39 | 540 30 0 40 | 0 AE000659|TRAV14/DV4*02|Homo (null) 41 | 570 30 0 42 | 0 M21624|TRAV14/DV4*03|Homo (null) 43 | 600 30 0 44 | 0 L09758|TRAV14/DV4*04|Homo (null) 45 | 630 30 0 46 | 0 AE000659|TRAV16*01|Homo (null) 47 | 660 30 0 48 | 0 AE000660|TRAV17*01|Homo (null) 49 | 690 30 0 50 | 0 AE000660|TRAV18*01|Homo (null) 51 | 720 30 0 52 | 0 AE000660|TRAV19*01|Homo (null) 53 | 750 30 0 54 | 0 AE000658|TRAV2*01|Homo (null) 55 | 780 30 0 56 | 0 M17659|TRAV2*02|Homo (null) 57 | 810 30 0 58 | 0 AE000660|TRAV20*01|Homo (null) 59 | 840 30 0 60 | 0 X68696|TRAV20*02|Homo (null) 61 | 870 30 0 62 | 0 S60789|TRAV20*03|Homo (null) 63 | 900 30 0 64 | 0 X70305|TRAV20*04|Homo (null) 65 | 930 30 0 66 | 0 AE000660|TRAV21*01|Homo (null) 67 | 960 30 0 68 | 0 X58736|TRAV21*02|Homo (null) 69 | 990 30 0 70 | 0 AE000660|TRAV22*01|Homo (null) 71 | 1020 30 0 72 | 0 AE000660|TRAV23/DV6*01|Homo (null) 73 | 1050 30 0 74 | 0 M17660|TRAV23/DV6*02|Homo (null) 75 | 1080 30 0 76 | 0 M97704|TRAV23/DV6*03|Homo (null) 77 | 1110 30 0 78 | 0 Y10411|TRAV23/DV6*04|Homo (null) 79 | 1140 30 0 80 | 0 AE000660|TRAV24*01|Homo (null) 81 | 1170 30 0 82 | 0 M17661|TRAV24*02|Homo (null) 83 | 1200 30 0 84 | 0 AE000660|TRAV25*01|Homo (null) 85 | 1230 30 0 86 | 0 AE000660|TRAV26-1*01|Homo (null) 87 | 1260 30 0 88 | 0 M27371|TRAV26-1*02|Homo (null) 89 | 1290 30 0 90 | 0 L06886|TRAV26-1*03|Homo (null) 91 | 1320 30 0 92 | 0 AE000660|TRAV26-2*01|Homo (null) 93 | 1350 30 0 94 | 0 L11160|TRAV26-2*02|Homo (null) 95 | 1380 30 0 96 | 0 AE000660|TRAV27*01|Homo (null) 97 | 1410 30 0 98 | 0 X04957|TRAV27*02|Homo (null) 99 | 1440 30 0 100 | 0 D13075|TRAV27*03|Homo (null) 101 | 1470 30 0 102 | 0 AE000660|TRAV29/DV5*01|Homo (null) 103 | 1500 30 0 104 | 0 S81645|TRAV29/DV5*02|Homo (null) 105 | 1530 30 0 106 | 0 AE000658|TRAV3*01|Homo (null) 107 | 1560 30 0 108 | 0 AE000660|TRAV30*01|Homo (null) 109 | 1590 30 0 110 | 0 X58768|TRAV30*02|Homo (null) 111 | 1620 30 0 112 | 0 L06883|TRAV30*03|Homo (null) 113 | 1650 30 0 114 | 0 U32537|TRAV30*04|Homo (null) 115 | 1680 30 0 116 | 0 AE000660|TRAV34*01|Homo (null) 117 | 1710 30 0 118 | 0 AE000660|TRAV35*01|Homo (null) 119 | 1740 30 0 120 | 0 X58738|TRAV35*02|Homo (null) 121 | 1770 30 0 122 | 0 AE000660|TRAV36/DV7*01|Homo (null) 123 | 1800 30 0 124 | 0 X61070|TRAV36/DV7*02|Homo (null) 125 | 1830 30 0 126 | 0 X58767|TRAV36/DV7*03|Homo (null) 127 | 1860 30 0 128 | 0 Z46643|TRAV36/DV7*04|Homo (null) 129 | 1890 30 0 130 | 0 AE000661|TRAV38-1*01|Homo (null) 131 | 1920 30 0 132 | 0 M64355|TRAV38-1*02|Homo (null) 133 | 1950 30 0 134 | 0 M95394|TRAV38-1*03|Homo (null) 135 | 1980 30 0 136 | 0 L06880|TRAV38-1*04|Homo (null) 137 | 2010 30 0 138 | 0 AE000661|TRAV38-2/DV8*01|Homo (null) 139 | 2040 30 0 140 | 0 AE000661|TRAV39*01|Homo (null) 141 | 2070 30 0 142 | 0 AE000658|TRAV4*01|Homo (null) 143 | 2100 30 0 144 | 0 X73521|TRAV40*01|Homo (null) 145 | 2130 30 0 146 | 0 AE000661|TRAV41*01|Homo (null) 147 | 2160 30 0 148 | 0 AE000659|TRAV5*01|Homo (null) 149 | 2190 30 0 150 | 0 AE000659|TRAV6*01|Homo (null) 151 | 2220 30 0 152 | 0 X58747|TRAV6*02|Homo (null) 153 | 2250 30 0 154 | 0 Z49060|TRAV6*03|Homo (null) 155 | 2280 30 0 156 | 0 Y10409|TRAV6*04|Homo (null) 157 | 2310 30 0 158 | 0 Y10410|TRAV6*05|Homo (null) 159 | 2340 30 0 160 | 0 U32542|TRAV6*06|Homo (null) 161 | 2370 30 0 162 | 0 AE000659|TRAV7*01|Homo (null) 163 | 2400 30 0 164 | 0 AE000659|TRAV8-1*01|Homo (null) 165 | 2430 30 0 166 | 0 U32520|TRAV8-1*02|Homo (null) 167 | 2460 30 0 168 | 0 AE000659|TRAV8-2*01|Homo (null) 169 | 2490 30 0 170 | 0 M17650|TRAV8-2*02|Homo (null) 171 | 2520 30 0 172 | 0 AE000659|TRAV8-3*01|Homo (null) 173 | 2550 30 0 174 | 0 M35617|TRAV8-3*02|Homo (null) 175 | 2580 30 0 176 | 0 L06885|TRAV8-3*03|Homo (null) 177 | 2610 30 0 178 | 0 AE000659|TRAV8-4*01|Homo (null) 179 | 2640 30 0 180 | 0 M12423|TRAV8-4*02|Homo (null) 181 | 2670 30 0 182 | 0 D13077|TRAV8-4*03|Homo (null) 183 | 2700 30 0 184 | 0 M12959|TRAV8-4*04|Homo (null) 185 | 2730 30 0 186 | 0 X63455|TRAV8-4*05|Homo (null) 187 | 2760 30 0 188 | 0 X02850|TRAV8-6*01|Homo (null) 189 | 2790 30 0 190 | 0 AE000659|TRAV8-6*02|Homo (null) 191 | 2820 30 0 192 | 0 AE000660|TRAV8-7*01|Homo (null) 193 | 2850 30 0 194 | 0 AE000659|TRAV9-1*01|Homo (null) 195 | 2880 30 0 196 | 0 AE000659|TRAV9-2*01|Homo (null) 197 | 2910 30 0 198 | 0 X58745|TRAV9-2*02|Homo (null) 199 | 2940 30 0 200 | 0 L06881|TRAV9-2*03|Homo (null) 201 | 2970 30 0 202 | 0 L06882|TRAV9-2*04|Homo (null) 203 | 3000 30 0 204 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR2-front.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-CDR2-front.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR2-front.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-CDR2-front.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-CDR2-front.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-CDR2-front.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-gai-DNA.fa.amb: -------------------------------------------------------------------------------- 1 | 3090 103 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-gai-DNA.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-gai-DNA.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-gai-DNA.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-gai-DNA.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-gai-DNA.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-gai-DNA.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-gai2-DNA.fa: -------------------------------------------------------------------------------- 1 | >AE000658|TRAV1-1*01|Homo 2 | ctccagatgaaagactctgcctcttacttctgc 3 | >X04939|TRAV1-1*02|Homo 4 | ctccagatgaaagactctgcctcttacttctgc 5 | >AE000658|TRAV1-2*01|Homo 6 | ctccagatgaaagactctgcctcttacctctgt 7 | >U32544|TRAV1-2*02|Homo 8 | gctacggaaggtgccattgtccagatcaactgc 9 | >AE000659|TRAV10*01|Homo 10 | tcccagctcagcgattcagcctcctacatctgt 11 | >AE000659|TRAV12-1*01|Homo 12 | tccaagctcagtgattcagccacctacctctgt 13 | >M17657|TRAV12-1*02|Homo 14 | tccaagctcagtgattcagccacctacctctgt 15 | >AE000659|TRAV12-2*01|Homo 16 | tcccagcccagtgattcagccacctacctctgt 17 | >M81774|TRAV12-2*02|Homo 18 | tcccagcccagtgattcagccacctacctctgt 19 | >X04946|TRAV12-2*03|Homo 20 | tcccagcccagtgattcagccacctacctctgt 21 | >AE000659|TRAV12-3*01|Homo 22 | tcacagcccagtgattcagccacctacctctgt 23 | >M17656|TRAV12-3*02|Homo 24 | tcacagcccagtgattcagccacctacctctgt 25 | >AE000659|TRAV13-1*01|Homo 26 | acccaacctgaagactcggctgtctacttctgt 27 | >X04954|TRAV13-1*02|Homo 28 | acccaacctgaagactcggctgtctacttctgt 29 | >L11162|TRAV13-1*03|Homo 30 | gtccaggagggagacagcgctgttatcaagtgt 31 | >AE000659|TRAV13-2*01|Homo 32 | actcaacctggagactcagctgtctacttttgt 33 | >M17658|TRAV13-2*02|Homo 34 | actcaacctggagactcagctgtctacttttgt 35 | >M21626|TRAV14/DV4*01|Homo 36 | tcacaactgggggactcagcaatgtacttctgt 37 | >AE000659|TRAV14/DV4*02|Homo 38 | tcacaactgggggactcagcaatgtatttctgt 39 | >M21624|TRAV14/DV4*03|Homo 40 | tcacaactgggggactcagcaatgtatttctgt 41 | >L09758|TRAV14/DV4*04|Homo 42 | gtgcaggaaaaggaggctgtgactctggactgc 43 | >AE000659|TRAV16*01|Homo 44 | gctcaagaggaagactcagccatgtattactgt 45 | >AE000660|TRAV17*01|Homo 46 | tcccgggcagcagacactgcttcttacttctgt 47 | >AE000660|TRAV18*01|Homo 48 | gtgcagctgtcggactctgccgtgtactactgc 49 | >AE000660|TRAV19*01|Homo 50 | tcacaagtcgtggactcagcagtatacttctgt 51 | >AE000658|TRAV2*01|Homo 52 | gtgcgggaggcagatgctgctgtttactactgt 53 | >M17659|TRAV2*02|Homo 54 | gtgcgggaggcagatgctgctgtttactactgt 55 | >AE000660|TRAV20*01|Homo 56 | cctaaacctgaagactcagccacttatctctgt 57 | >X68696|TRAV20*02|Homo 58 | cctaaacctgaagactcagccacttatctctgt 59 | >S60789|TRAV20*03|Homo 60 | cctaaacctgaagactcagccacttatctctgt 61 | >X70305|TRAV20*04|Homo 62 | cctaaacctgaagactcagccacttatctctgt 63 | >AE000660|TRAV21*01|Homo 64 | tctcagcctggtgactcagccacctacctctgt 65 | >X58736|TRAV21*02|Homo 66 | tctcagcctggtgactcagccacctacctctgt 67 | >AE000660|TRAV22*01|Homo 68 | tcccagaccacagactcaggcgtttatttctgt 69 | >AE000660|TRAV23/DV6*01|Homo 70 | tcccagcctggagactcagccacctacttctgt 71 | >M17660|TRAV23/DV6*02|Homo 72 | tcccagcctggagactcagccacctacttctgt 73 | >M97704|TRAV23/DV6*03|Homo 74 | tcccagcctggagactcagccacctacttctgt 75 | >Y10411|TRAV23/DV6*04|Homo 76 | tcccagcctggagactcagccacctacttctgt 77 | >AE000660|TRAV24*01|Homo 78 | tcccagcctgaagactcagccacatacctctgt 79 | >M17661|TRAV24*02|Homo 80 | tcccagcctgaagattcagccacatacctctgt 81 | >AE000660|TRAV25*01|Homo 82 | acccagactacagatgtaggaacctacttctgt 83 | >AE000660|TRAV26-1*01|Homo 84 | gctacgctgagagacactgctgtgtactattgc 85 | >M27371|TRAV26-1*02|Homo 86 | gctacgctgagagacactgctgtgtactattgc 87 | >L06886|TRAV26-1*03|Homo 88 | gctacgctgagagacactgctgtgtactattgc 89 | >AE000660|TRAV26-2*01|Homo 90 | gctaccttgagagatgctgctgtgtactactgc 91 | >L11160|TRAV26-2*02|Homo 92 | cttacaagcaatgtgaacaacagaatggcctgt 93 | >AE000660|TRAV27*01|Homo 94 | gcccagcctggtgatacaggcctctacctctgt 95 | >X04957|TRAV27*02|Homo 96 | gcccagcctggtgatacaggccactacctctgt 97 | >D13075|TRAV27*03|Homo 98 | gcccagactggtgatacaggcctctacctctgt 99 | >AE000660|TRAV29/DV5*01|Homo 100 | tcccagcctggagactctgcagtgtacttctgt 101 | >S81645|TRAV29/DV5*02|Homo 102 | tcccagcctggagactctgcagtgtacttctgt 103 | >AE000658|TRAV3*01|Homo 104 | gcccttgtgagcgactccgctttgtacttctgt 105 | >M27377|TRAV3*02|Homo 106 | gcccttgtgagcgactccgctttgtacttctgt 107 | >AE000660|TRAV30*01|Homo 108 | tcccagctcagttactcaggaacctacttctgc 109 | >X58768|TRAV30*02|Homo 110 | tcccagctcagttactcaggaacctacttctgc 111 | >L06883|TRAV30*03|Homo 112 | tcccagctcagttactcaggaacctacttctgc 113 | >U32537|TRAV30*04|Homo 114 | ctccgagaaggggaagatgctgtcatcaactgc 115 | >AE000660|TRAV34*01|Homo 116 | tcccagcccagccatgcaggcatctacctctgt 117 | >AE000660|TRAV35*01|Homo 118 | tccatacctagtgatgtaggcatctacttctgt 119 | >X58738|TRAV35*02|Homo 120 | tccatacctagtgatgtaggcatctacttctgt 121 | >AE000660|TRAV36/DV7*01|Homo 122 | acccagaccggagactcggccatctacctctgt 123 | >X61070|TRAV36/DV7*02|Homo 124 | acccagaccggagactcggccgtctacctctgt 125 | >X58767|TRAV36/DV7*03|Homo 126 | acccagaccggagactcggccgtctacctctgt 127 | >Z46643|TRAV36/DV7*04|Homo 128 | acccagaccggagactcggccgtctacctctgt 129 | >AE000661|TRAV38-1*01|Homo 130 | tcacagctgggggacactgcgatgtatttctgt 131 | >M64355|TRAV38-1*02|Homo 132 | tcacagctgggggacactgcgatgtatttctgt 133 | >M95394|TRAV38-1*03|Homo 134 | tcacagctgggggacactgcgatgtatttctgt 135 | >L06880|TRAV38-1*04|Homo 136 | tcacagctgggggacactgcgatgtatttctgt 137 | >AE000661|TRAV38-2/DV8*01|Homo 138 | tcacagctgggggatgccgcgatgtatttctgt 139 | >AE000661|TRAV39*01|Homo 140 | gccgtgcatgacctctctgccacctacttctgt 141 | >AE000658|TRAV4*01|Homo 142 | gtttccctgagcgacactgctgtgtactactgc 143 | >X73521|TRAV40*01|Homo 144 | gtccaggtatcagactcagccgtgtactactgt 145 | >AE000661|TRAV41*01|Homo 146 | tcccatcccagagactctgccgtctacatctgt 147 | >AE000659|TRAV5*01|Homo 148 | acccagactggggactcagctatctacttctgt 149 | >AE000659|TRAV6*01|Homo 150 | tcccagcctgcagactcagctacctacctctgt 151 | >X58747|TRAV6*02|Homo 152 | tcccagcctgcagactcagctacctacctctgt 153 | >Z49060|TRAV6*03|Homo 154 | tcccagcctgcagactcagctacctacctctgt 155 | >Y10409|TRAV6*04|Homo 156 | tcccagcctgcagactcagctacctacctctgt 157 | >Y10410|TRAV6*05|Homo 158 | tcccagcctgcagactcagctacctacctctgt 159 | >U32542|TRAV6*06|Homo 160 | attcaggagggtaaaacggccaccctgacctgc 161 | >AE000659|TRAV7*01|Homo 162 | gtgcagcctgaagattcagccacctatttctgt 163 | >AE000659|TRAV8-1*01|Homo 164 | gtgcagtggagtgacacagctgagtacttctgt 165 | >U32520|TRAV8-1*02|Homo 166 | ctctctgaagcagcctcactggagttgggatgc 167 | >AE000659|TRAV8-2*01|Homo 168 | gcccatatgagcgacgcggctgagtacttctgt 169 | >M17650|TRAV8-2*02|Homo 170 | gcccatatgagcgacgcggctgagtacttctgt 171 | >AE000659|TRAV8-3*01|Homo 172 | gtgcattggagtgatgctgctgagtacttctgt 173 | >M35617|TRAV8-3*02|Homo 174 | gtgcattggagtgatgctgctgagtacttctgt 175 | >L06885|TRAV8-3*03|Homo 176 | gtgcattggagtgatgcgtctgagtacttctgt 177 | >AE000659|TRAV8-4*01|Homo 178 | gcccatatgagcgacgcggctgagtacttctgt 179 | >M12423|TRAV8-4*02|Homo 180 | gcccatatgagcgacgcggctgagtacttctgt 181 | >D13077|TRAV8-4*03|Homo 182 | gcccatatgagcgacgcggctgagtacttctgt 183 | >M12959|TRAV8-4*04|Homo 184 | gcccatatgagcgacgcggctgagtacttctgt 185 | >X63455|TRAV8-4*05|Homo 186 | gcccatatgagcgacgcggctgagtacttctgt 187 | >K02777|TRAV8-4*06|Homo 188 | gcccatatgagcgacgcggctgagtacttctgt 189 | >M17665|TRAV8-4*07|Homo 190 | gcccatatgaccgacccggctgagtacttctgt 191 | >X02850|TRAV8-6*01|Homo 192 | gtccatataagcgacacggctgagtacttctgt 193 | >AE000659|TRAV8-6*02|Homo 194 | gtccatataagcgacacggctgagtacttctgt 195 | >AE000659|TRAV9-1*01|Homo 196 | gttcaagagtcagactccgctgtgtacttctgt 197 | >AE000659|TRAV9-2*01|Homo 198 | gttcaagtgtcagactcagcggtgtacttctgt 199 | >X58745|TRAV9-2*02|Homo 200 | gttcaagtgtcagactcagcggtgtacttctgt 201 | >L06881|TRAV9-2*03|Homo 202 | gttcaagtgtcagactcagcggtgtacttctgt 203 | >L06882|TRAV9-2*04|Homo 204 | gttcaagtgtcagactcagcggtgtacttctgt 205 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-gai2-DNA.fa.amb: -------------------------------------------------------------------------------- 1 | 3366 102 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-gai2-DNA.fa.ann: -------------------------------------------------------------------------------- 1 | 3366 102 11 2 | 0 AE000658|TRAV1-1*01|Homo (null) 3 | 0 33 0 4 | 0 X04939|TRAV1-1*02|Homo (null) 5 | 33 33 0 6 | 0 AE000658|TRAV1-2*01|Homo (null) 7 | 66 33 0 8 | 0 U32544|TRAV1-2*02|Homo (null) 9 | 99 33 0 10 | 0 AE000659|TRAV10*01|Homo (null) 11 | 132 33 0 12 | 0 AE000659|TRAV12-1*01|Homo (null) 13 | 165 33 0 14 | 0 M17657|TRAV12-1*02|Homo (null) 15 | 198 33 0 16 | 0 AE000659|TRAV12-2*01|Homo (null) 17 | 231 33 0 18 | 0 M81774|TRAV12-2*02|Homo (null) 19 | 264 33 0 20 | 0 X04946|TRAV12-2*03|Homo (null) 21 | 297 33 0 22 | 0 AE000659|TRAV12-3*01|Homo (null) 23 | 330 33 0 24 | 0 M17656|TRAV12-3*02|Homo (null) 25 | 363 33 0 26 | 0 AE000659|TRAV13-1*01|Homo (null) 27 | 396 33 0 28 | 0 X04954|TRAV13-1*02|Homo (null) 29 | 429 33 0 30 | 0 L11162|TRAV13-1*03|Homo (null) 31 | 462 33 0 32 | 0 AE000659|TRAV13-2*01|Homo (null) 33 | 495 33 0 34 | 0 M17658|TRAV13-2*02|Homo (null) 35 | 528 33 0 36 | 0 M21626|TRAV14/DV4*01|Homo (null) 37 | 561 33 0 38 | 0 AE000659|TRAV14/DV4*02|Homo (null) 39 | 594 33 0 40 | 0 M21624|TRAV14/DV4*03|Homo (null) 41 | 627 33 0 42 | 0 L09758|TRAV14/DV4*04|Homo (null) 43 | 660 33 0 44 | 0 AE000659|TRAV16*01|Homo (null) 45 | 693 33 0 46 | 0 AE000660|TRAV17*01|Homo (null) 47 | 726 33 0 48 | 0 AE000660|TRAV18*01|Homo (null) 49 | 759 33 0 50 | 0 AE000660|TRAV19*01|Homo (null) 51 | 792 33 0 52 | 0 AE000658|TRAV2*01|Homo (null) 53 | 825 33 0 54 | 0 M17659|TRAV2*02|Homo (null) 55 | 858 33 0 56 | 0 AE000660|TRAV20*01|Homo (null) 57 | 891 33 0 58 | 0 X68696|TRAV20*02|Homo (null) 59 | 924 33 0 60 | 0 S60789|TRAV20*03|Homo (null) 61 | 957 33 0 62 | 0 X70305|TRAV20*04|Homo (null) 63 | 990 33 0 64 | 0 AE000660|TRAV21*01|Homo (null) 65 | 1023 33 0 66 | 0 X58736|TRAV21*02|Homo (null) 67 | 1056 33 0 68 | 0 AE000660|TRAV22*01|Homo (null) 69 | 1089 33 0 70 | 0 AE000660|TRAV23/DV6*01|Homo (null) 71 | 1122 33 0 72 | 0 M17660|TRAV23/DV6*02|Homo (null) 73 | 1155 33 0 74 | 0 M97704|TRAV23/DV6*03|Homo (null) 75 | 1188 33 0 76 | 0 Y10411|TRAV23/DV6*04|Homo (null) 77 | 1221 33 0 78 | 0 AE000660|TRAV24*01|Homo (null) 79 | 1254 33 0 80 | 0 M17661|TRAV24*02|Homo (null) 81 | 1287 33 0 82 | 0 AE000660|TRAV25*01|Homo (null) 83 | 1320 33 0 84 | 0 AE000660|TRAV26-1*01|Homo (null) 85 | 1353 33 0 86 | 0 M27371|TRAV26-1*02|Homo (null) 87 | 1386 33 0 88 | 0 L06886|TRAV26-1*03|Homo (null) 89 | 1419 33 0 90 | 0 AE000660|TRAV26-2*01|Homo (null) 91 | 1452 33 0 92 | 0 L11160|TRAV26-2*02|Homo (null) 93 | 1485 33 0 94 | 0 AE000660|TRAV27*01|Homo (null) 95 | 1518 33 0 96 | 0 X04957|TRAV27*02|Homo (null) 97 | 1551 33 0 98 | 0 D13075|TRAV27*03|Homo (null) 99 | 1584 33 0 100 | 0 AE000660|TRAV29/DV5*01|Homo (null) 101 | 1617 33 0 102 | 0 S81645|TRAV29/DV5*02|Homo (null) 103 | 1650 33 0 104 | 0 AE000658|TRAV3*01|Homo (null) 105 | 1683 33 0 106 | 0 M27377|TRAV3*02|Homo (null) 107 | 1716 33 0 108 | 0 AE000660|TRAV30*01|Homo (null) 109 | 1749 33 0 110 | 0 X58768|TRAV30*02|Homo (null) 111 | 1782 33 0 112 | 0 L06883|TRAV30*03|Homo (null) 113 | 1815 33 0 114 | 0 U32537|TRAV30*04|Homo (null) 115 | 1848 33 0 116 | 0 AE000660|TRAV34*01|Homo (null) 117 | 1881 33 0 118 | 0 AE000660|TRAV35*01|Homo (null) 119 | 1914 33 0 120 | 0 X58738|TRAV35*02|Homo (null) 121 | 1947 33 0 122 | 0 AE000660|TRAV36/DV7*01|Homo (null) 123 | 1980 33 0 124 | 0 X61070|TRAV36/DV7*02|Homo (null) 125 | 2013 33 0 126 | 0 X58767|TRAV36/DV7*03|Homo (null) 127 | 2046 33 0 128 | 0 Z46643|TRAV36/DV7*04|Homo (null) 129 | 2079 33 0 130 | 0 AE000661|TRAV38-1*01|Homo (null) 131 | 2112 33 0 132 | 0 M64355|TRAV38-1*02|Homo (null) 133 | 2145 33 0 134 | 0 M95394|TRAV38-1*03|Homo (null) 135 | 2178 33 0 136 | 0 L06880|TRAV38-1*04|Homo (null) 137 | 2211 33 0 138 | 0 AE000661|TRAV38-2/DV8*01|Homo (null) 139 | 2244 33 0 140 | 0 AE000661|TRAV39*01|Homo (null) 141 | 2277 33 0 142 | 0 AE000658|TRAV4*01|Homo (null) 143 | 2310 33 0 144 | 0 X73521|TRAV40*01|Homo (null) 145 | 2343 33 0 146 | 0 AE000661|TRAV41*01|Homo (null) 147 | 2376 33 0 148 | 0 AE000659|TRAV5*01|Homo (null) 149 | 2409 33 0 150 | 0 AE000659|TRAV6*01|Homo (null) 151 | 2442 33 0 152 | 0 X58747|TRAV6*02|Homo (null) 153 | 2475 33 0 154 | 0 Z49060|TRAV6*03|Homo (null) 155 | 2508 33 0 156 | 0 Y10409|TRAV6*04|Homo (null) 157 | 2541 33 0 158 | 0 Y10410|TRAV6*05|Homo (null) 159 | 2574 33 0 160 | 0 U32542|TRAV6*06|Homo (null) 161 | 2607 33 0 162 | 0 AE000659|TRAV7*01|Homo (null) 163 | 2640 33 0 164 | 0 AE000659|TRAV8-1*01|Homo (null) 165 | 2673 33 0 166 | 0 U32520|TRAV8-1*02|Homo (null) 167 | 2706 33 0 168 | 0 AE000659|TRAV8-2*01|Homo (null) 169 | 2739 33 0 170 | 0 M17650|TRAV8-2*02|Homo (null) 171 | 2772 33 0 172 | 0 AE000659|TRAV8-3*01|Homo (null) 173 | 2805 33 0 174 | 0 M35617|TRAV8-3*02|Homo (null) 175 | 2838 33 0 176 | 0 L06885|TRAV8-3*03|Homo (null) 177 | 2871 33 0 178 | 0 AE000659|TRAV8-4*01|Homo (null) 179 | 2904 33 0 180 | 0 M12423|TRAV8-4*02|Homo (null) 181 | 2937 33 0 182 | 0 D13077|TRAV8-4*03|Homo (null) 183 | 2970 33 0 184 | 0 M12959|TRAV8-4*04|Homo (null) 185 | 3003 33 0 186 | 0 X63455|TRAV8-4*05|Homo (null) 187 | 3036 33 0 188 | 0 K02777|TRAV8-4*06|Homo (null) 189 | 3069 33 0 190 | 0 M17665|TRAV8-4*07|Homo (null) 191 | 3102 33 0 192 | 0 X02850|TRAV8-6*01|Homo (null) 193 | 3135 33 0 194 | 0 AE000659|TRAV8-6*02|Homo (null) 195 | 3168 33 0 196 | 0 AE000659|TRAV9-1*01|Homo (null) 197 | 3201 33 0 198 | 0 AE000659|TRAV9-2*01|Homo (null) 199 | 3234 33 0 200 | 0 X58745|TRAV9-2*02|Homo (null) 201 | 3267 33 0 202 | 0 L06881|TRAV9-2*03|Homo (null) 203 | 3300 33 0 204 | 0 L06882|TRAV9-2*04|Homo (null) 205 | 3333 33 0 206 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-gai2-DNA.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-gai2-DNA.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-gai2-DNA.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-gai2-DNA.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-gai2-DNA.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-gai2-DNA.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-gai3-DNA.fa.amb: -------------------------------------------------------------------------------- 1 | 13400 134 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-gai3-DNA.fa.ann: -------------------------------------------------------------------------------- 1 | 13400 134 11 2 | 0 TRAV1-1*01 (null) 3 | 0 100 0 4 | 0 TRAV1-1*02 (null) 5 | 100 100 0 6 | 0 TRAV1-2*01 (null) 7 | 200 100 0 8 | 0 TRAV1-2*02 (null) 9 | 300 100 0 10 | 0 TRAV1-2*03 (null) 11 | 400 100 0 12 | 0 TRAV10*01 (null) 13 | 500 100 0 14 | 0 TRAV10*02 (null) 15 | 600 100 0 16 | 0 TRAV11*01 (null) 17 | 700 100 0 18 | 0 TRAV11-1*01 (null) 19 | 800 100 0 20 | 0 TRAV12-1*01 (null) 21 | 900 100 0 22 | 0 TRAV12-1*02 (null) 23 | 1000 100 0 24 | 0 TRAV12-2*01 (null) 25 | 1100 100 0 26 | 0 TRAV12-2*02 (null) 27 | 1200 100 0 28 | 0 TRAV12-2*03 (null) 29 | 1300 100 0 30 | 0 TRAV12-3*01 (null) 31 | 1400 100 0 32 | 0 TRAV12-3*02 (null) 33 | 1500 100 0 34 | 0 TRAV13-1*01 (null) 35 | 1600 100 0 36 | 0 TRAV13-1*02 (null) 37 | 1700 100 0 38 | 0 TRAV13-1*03 (null) 39 | 1800 100 0 40 | 0 TRAV13-2*01 (null) 41 | 1900 100 0 42 | 0 TRAV13-2*02 (null) 43 | 2000 100 0 44 | 0 TRAV14-1*01 (null) 45 | 2100 100 0 46 | 0 TRAV14-1*02 (null) 47 | 2200 100 0 48 | 0 TRAV14/DV4*01 (null) 49 | 2300 100 0 50 | 0 TRAV14/DV4*02 (null) 51 | 2400 100 0 52 | 0 TRAV14/DV4*03 (null) 53 | 2500 100 0 54 | 0 TRAV14/DV4*04 (null) 55 | 2600 100 0 56 | 0 TRAV15*01 (null) 57 | 2700 100 0 58 | 0 TRAV16*01 (null) 59 | 2800 100 0 60 | 0 TRAV17*01 (null) 61 | 2900 100 0 62 | 0 TRAV18*01 (null) 63 | 3000 100 0 64 | 0 TRAV19*01 (null) 65 | 3100 100 0 66 | 0 TRAV2*01 (null) 67 | 3200 100 0 68 | 0 TRAV2*02 (null) 69 | 3300 100 0 70 | 0 TRAV20*01 (null) 71 | 3400 100 0 72 | 0 TRAV20*02 (null) 73 | 3500 100 0 74 | 0 TRAV20*03 (null) 75 | 3600 100 0 76 | 0 TRAV20*04 (null) 77 | 3700 100 0 78 | 0 TRAV21*01 (null) 79 | 3800 100 0 80 | 0 TRAV21*02 (null) 81 | 3900 100 0 82 | 0 TRAV22*01 (null) 83 | 4000 100 0 84 | 0 TRAV23/DV6*01 (null) 85 | 4100 100 0 86 | 0 TRAV23/DV6*02 (null) 87 | 4200 100 0 88 | 0 TRAV23/DV6*03 (null) 89 | 4300 100 0 90 | 0 TRAV23/DV6*04 (null) 91 | 4400 100 0 92 | 0 TRAV23/DV6*05 (null) 93 | 4500 100 0 94 | 0 TRAV24*01 (null) 95 | 4600 100 0 96 | 0 TRAV24*02 (null) 97 | 4700 100 0 98 | 0 TRAV25*01 (null) 99 | 4800 100 0 100 | 0 TRAV26-1*01 (null) 101 | 4900 100 0 102 | 0 TRAV26-1*02 (null) 103 | 5000 100 0 104 | 0 TRAV26-1*03 (null) 105 | 5100 100 0 106 | 0 TRAV26-2*01 (null) 107 | 5200 100 0 108 | 0 TRAV26-2*02 (null) 109 | 5300 100 0 110 | 0 TRAV27*01 (null) 111 | 5400 100 0 112 | 0 TRAV27*02 (null) 113 | 5500 100 0 114 | 0 TRAV27*03 (null) 115 | 5600 100 0 116 | 0 TRAV28*01 (null) 117 | 5700 100 0 118 | 0 TRAV28*02 (null) 119 | 5800 100 0 120 | 0 TRAV29/DV5*01 (null) 121 | 5900 100 0 122 | 0 TRAV29/DV5*02 (null) 123 | 6000 100 0 124 | 0 TRAV29/DV5*03 (null) 125 | 6100 100 0 126 | 0 TRAV29/DV5*04 (null) 127 | 6200 100 0 128 | 0 TRAV3*01 (null) 129 | 6300 100 0 130 | 0 TRAV3*02 (null) 131 | 6400 100 0 132 | 0 TRAV30*01 (null) 133 | 6500 100 0 134 | 0 TRAV30*02 (null) 135 | 6600 100 0 136 | 0 TRAV30*03 (null) 137 | 6700 100 0 138 | 0 TRAV30*04 (null) 139 | 6800 100 0 140 | 0 TRAV30*05 (null) 141 | 6900 100 0 142 | 0 TRAV31*01 (null) 143 | 7000 100 0 144 | 0 TRAV31*02 (null) 145 | 7100 100 0 146 | 0 TRAV32*01 (null) 147 | 7200 100 0 148 | 0 TRAV33*01 (null) 149 | 7300 100 0 150 | 0 TRAV34*01 (null) 151 | 7400 100 0 152 | 0 TRAV35*01 (null) 153 | 7500 100 0 154 | 0 TRAV35*02 (null) 155 | 7600 100 0 156 | 0 TRAV35*03 (null) 157 | 7700 100 0 158 | 0 TRAV36/DV7*01 (null) 159 | 7800 100 0 160 | 0 TRAV36/DV7*02 (null) 161 | 7900 100 0 162 | 0 TRAV36/DV7*03 (null) 163 | 8000 100 0 164 | 0 TRAV36/DV7*04 (null) 165 | 8100 100 0 166 | 0 TRAV36/DV7*05 (null) 167 | 8200 100 0 168 | 0 TRAV37*01 (null) 169 | 8300 100 0 170 | 0 TRAV38-1*01 (null) 171 | 8400 100 0 172 | 0 TRAV38-1*02 (null) 173 | 8500 100 0 174 | 0 TRAV38-1*03 (null) 175 | 8600 100 0 176 | 0 TRAV38-1*04 (null) 177 | 8700 100 0 178 | 0 TRAV38-2/DV8*01 (null) 179 | 8800 100 0 180 | 0 TRAV39*01 (null) 181 | 8900 100 0 182 | 0 TRAV4*01 (null) 183 | 9000 100 0 184 | 0 TRAV40*01 (null) 185 | 9100 100 0 186 | 0 TRAV41*01 (null) 187 | 9200 100 0 188 | 0 TRAV46*01 (null) 189 | 9300 100 0 190 | 0 TRAV5*01 (null) 191 | 9400 100 0 192 | 0 TRAV6*01 (null) 193 | 9500 100 0 194 | 0 TRAV6*02 (null) 195 | 9600 100 0 196 | 0 TRAV6*03 (null) 197 | 9700 100 0 198 | 0 TRAV6*04 (null) 199 | 9800 100 0 200 | 0 TRAV6*05 (null) 201 | 9900 100 0 202 | 0 TRAV6*06 (null) 203 | 10000 100 0 204 | 0 TRAV6*07 (null) 205 | 10100 100 0 206 | 0 TRAV7*01 (null) 207 | 10200 100 0 208 | 0 TRAV8-1*01 (null) 209 | 10300 100 0 210 | 0 TRAV8-1*02 (null) 211 | 10400 100 0 212 | 0 TRAV8-2*01 (null) 213 | 10500 100 0 214 | 0 TRAV8-2*02 (null) 215 | 10600 100 0 216 | 0 TRAV8-2*03 (null) 217 | 10700 100 0 218 | 0 TRAV8-3*01 (null) 219 | 10800 100 0 220 | 0 TRAV8-3*02 (null) 221 | 10900 100 0 222 | 0 TRAV8-3*03 (null) 223 | 11000 100 0 224 | 0 TRAV8-4*01 (null) 225 | 11100 100 0 226 | 0 TRAV8-4*02 (null) 227 | 11200 100 0 228 | 0 TRAV8-4*03 (null) 229 | 11300 100 0 230 | 0 TRAV8-4*04 (null) 231 | 11400 100 0 232 | 0 TRAV8-4*05 (null) 233 | 11500 100 0 234 | 0 TRAV8-4*06 (null) 235 | 11600 100 0 236 | 0 TRAV8-4*07 (null) 237 | 11700 100 0 238 | 0 TRAV8-5*01 (null) 239 | 11800 100 0 240 | 0 TRAV8-6*01 (null) 241 | 11900 100 0 242 | 0 TRAV8-6*02 (null) 243 | 12000 100 0 244 | 0 TRAV8-6-1*01 (null) 245 | 12100 100 0 246 | 0 TRAV8-7*01 (null) 247 | 12200 100 0 248 | 0 TRAV8-7*02 (null) 249 | 12300 100 0 250 | 0 TRAV9-1*01 (null) 251 | 12400 100 0 252 | 0 TRAV9-2*01 (null) 253 | 12500 100 0 254 | 0 TRAV9-2*02 (null) 255 | 12600 100 0 256 | 0 TRAV9-2*03 (null) 257 | 12700 100 0 258 | 0 TRAV9-2*04 (null) 259 | 12800 100 0 260 | 0 TRAVA*01 (null) 261 | 12900 100 0 262 | 0 TRAVA*02 (null) 263 | 13000 100 0 264 | 0 TRAVB*01 (null) 265 | 13100 100 0 266 | 0 TRAVB*02 (null) 267 | 13200 100 0 268 | 0 TRAVC*01 (null) 269 | 13300 100 0 270 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-gai3-DNA.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-gai3-DNA.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-gai3-DNA.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-gai3-DNA.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-gai3-DNA.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-gai3-DNA.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-imgt-AAP.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-imgt-AAP.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-imgt-AAP.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-imgt-AAP.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-imgt-AAP.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-imgt-AAP.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-imgt-DNA.fa.amb: -------------------------------------------------------------------------------- 1 | 27939 103 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-imgt-DNA.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-imgt-DNA.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-imgt-DNA.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-imgt-DNA.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRA/TRAV-imgt-DNA.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRA/TRAV-imgt-DNA.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRA/comm.sh: -------------------------------------------------------------------------------- 1 | for c in `ls | grep TR` 2 | do 3 | /catt/bwa-0.7.17/bwa index $c %c 4 | done 5 | -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBJ-gai3-DNA.fa: -------------------------------------------------------------------------------- 1 | >TRBJ1-1*01 K02545|TRBJ1-1*01|Homo 2 | ttctttggacaaggcaccagactcacagtt 3 | >TRBJ1-2*01 K02545|TRBJ1-2*01|Homo 4 | ttcggttcggggaccaggttaaccgttgta 5 | >TRBJ1-3*01 M14158|TRBJ1-3*01|Homo 6 | tttggagagggaagttggctcactgttgta 7 | >TRBJ1-4*01 M14158|TRBJ1-4*01|Homo 8 | ttttttggcagtggaacccagctctctgtc 9 | >TRBJ1-5*01 M14158|TRBJ1-5*01|Homo 10 | tttggtgatgggactcgactctccatccta 11 | >TRBJ1-6*01 M14158|TRBJ1-6*01|Homo 12 | tttgggaatgggaccaggctcactgtgaca 13 | >TRBJ1-6*02 L36092|TRBJ1-6*02|Homo 14 | tttgggaacgggaccaggctcactgtgaca 15 | >TRBJ2-1*01 X02987|TRBJ2-1*01|Homo 16 | ttcttcgggccagggacacggctcaccgtg 17 | >TRBJ2-2*01 X02987|TRBJ2-2*01|Homo 18 | ttttttggagaaggctctaggctgaccgta 19 | >TRBJ2-3*01 X02987|TRBJ2-3*01|Homo 20 | tttggcccaggcacccggctgacagtgctc 21 | >TRBJ2-4*01 X02987|TRBJ2-4*01|Homo 22 | ttcggcgccgggacccggctctcagtgctg 23 | >TRBJ2-5*01 X02987|TRBJ2-5*01|Homo 24 | ttcgggccaggcacgcggctcctggtgctc 25 | >TRBJ2-6*01 X02987|TRBJ2-6*01|Homo 26 | ttcggggccggcagcaggctgaccgtgctg 27 | >TRBJ2-7*01 M14159|TRBJ2-7*01|Homo 28 | ttcgggccgggcaccaggctcacggtcaca 29 | -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBJ-gai3-DNA.fa.amb: -------------------------------------------------------------------------------- 1 | 420 14 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBJ-gai3-DNA.fa.ann: -------------------------------------------------------------------------------- 1 | 420 14 11 2 | 0 TRBJ1-1*01 K02545|TRBJ1-1*01|Homo 3 | 0 30 0 4 | 0 TRBJ1-2*01 K02545|TRBJ1-2*01|Homo 5 | 30 30 0 6 | 0 TRBJ1-3*01 M14158|TRBJ1-3*01|Homo 7 | 60 30 0 8 | 0 TRBJ1-4*01 M14158|TRBJ1-4*01|Homo 9 | 90 30 0 10 | 0 TRBJ1-5*01 M14158|TRBJ1-5*01|Homo 11 | 120 30 0 12 | 0 TRBJ1-6*01 M14158|TRBJ1-6*01|Homo 13 | 150 30 0 14 | 0 TRBJ1-6*02 L36092|TRBJ1-6*02|Homo 15 | 180 30 0 16 | 0 TRBJ2-1*01 X02987|TRBJ2-1*01|Homo 17 | 210 30 0 18 | 0 TRBJ2-2*01 X02987|TRBJ2-2*01|Homo 19 | 240 30 0 20 | 0 TRBJ2-3*01 X02987|TRBJ2-3*01|Homo 21 | 270 30 0 22 | 0 TRBJ2-4*01 X02987|TRBJ2-4*01|Homo 23 | 300 30 0 24 | 0 TRBJ2-5*01 X02987|TRBJ2-5*01|Homo 25 | 330 30 0 26 | 0 TRBJ2-6*01 X02987|TRBJ2-6*01|Homo 27 | 360 30 0 28 | 0 TRBJ2-7*01 M14159|TRBJ2-7*01|Homo 29 | 390 30 0 30 | -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBJ-gai3-DNA.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRB/TRBJ-gai3-DNA.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBJ-gai3-DNA.fa.fai: -------------------------------------------------------------------------------- 1 | TRBJ1-1*01 30 35 30 31 2 | TRBJ1-2*01 30 101 30 31 3 | TRBJ1-3*01 30 167 30 31 4 | TRBJ1-4*01 30 233 30 31 5 | TRBJ1-5*01 30 299 30 31 6 | TRBJ1-6*01 30 365 30 31 7 | TRBJ1-6*02 30 431 30 31 8 | TRBJ2-1*01 30 497 30 31 9 | TRBJ2-2*01 30 563 30 31 10 | TRBJ2-3*01 30 629 30 31 11 | TRBJ2-4*01 30 695 30 31 12 | TRBJ2-5*01 30 761 30 31 13 | TRBJ2-6*01 30 827 30 31 14 | TRBJ2-7*01 30 893 30 31 15 | -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBJ-gai3-DNA.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRB/TRBJ-gai3-DNA.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBJ-gai3-DNA.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRB/TRBJ-gai3-DNA.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBV-gai5-DNA.fa.amb: -------------------------------------------------------------------------------- 1 | 30438 114 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBV-gai5-DNA.fa.ann: -------------------------------------------------------------------------------- 1 | 30438 114 11 2 | 0 TRBV10-1*01 (null) 3 | 0 273 0 4 | 0 TRBV10-1*02 (null) 5 | 273 273 0 6 | 0 TRBV10-2*01 (null) 7 | 546 273 0 8 | 0 TRBV10-3*01 (null) 9 | 819 273 0 10 | 0 TRBV10-3*02 (null) 11 | 1092 273 0 12 | 0 TRBV10-3*03 (null) 13 | 1365 273 0 14 | 0 TRBV10-3*04 (null) 15 | 1638 273 0 16 | 0 TRBV11-1*01 (null) 17 | 1911 276 0 18 | 0 TRBV11-2*01 (null) 19 | 2187 276 0 20 | 0 TRBV11-2*02 (null) 21 | 2463 276 0 22 | 0 TRBV11-2*03 (null) 23 | 2739 276 0 24 | 0 TRBV11-3*01 (null) 25 | 3015 276 0 26 | 0 TRBV11-3*02 (null) 27 | 3291 276 0 28 | 0 TRBV11-3*03 (null) 29 | 3567 260 0 30 | 0 TRBV12-3*01 (null) 31 | 3827 276 0 32 | 0 TRBV12-4*01 (null) 33 | 4103 276 0 34 | 0 TRBV12-4*02 (null) 35 | 4379 276 0 36 | 0 TRBV12-5*01 (null) 37 | 4655 276 0 38 | 0 TRBV13*01 (null) 39 | 4931 273 0 40 | 0 TRBV13*02 (null) 41 | 5204 273 0 42 | 0 TRBV14*01 (null) 43 | 5477 276 0 44 | 0 TRBV14*02 (null) 45 | 5753 276 0 46 | 0 TRBV15*01 (null) 47 | 6029 273 0 48 | 0 TRBV15*02 (null) 49 | 6302 273 0 50 | 0 TRBV15*03 (null) 51 | 6575 273 0 52 | 0 TRBV16*01 (null) 53 | 6848 276 0 54 | 0 TRBV16*03 (null) 55 | 7124 276 0 56 | 0 TRBV18*01 (null) 57 | 7400 276 0 58 | 0 TRBV19*01 (null) 59 | 7676 273 0 60 | 0 TRBV19*02 (null) 61 | 7949 273 0 62 | 0 TRBV19*03 (null) 63 | 8222 273 0 64 | 0 TRBV2*01 (null) 65 | 8495 276 0 66 | 0 TRBV2*02 (null) 67 | 8771 276 0 68 | 0 TRBV2*03 (null) 69 | 9047 276 0 70 | 0 TRBV20-1*01 (null) 71 | 9323 282 0 72 | 0 TRBV20-1*02 (null) 73 | 9605 282 0 74 | 0 TRBV20-1*03 (null) 75 | 9887 282 0 76 | 0 TRBV20-1*04 (null) 77 | 10169 282 0 78 | 0 TRBV20-1*05 (null) 79 | 10451 282 0 80 | 0 TRBV20-1*06 (null) 81 | 10733 282 0 82 | 0 TRBV20-1*07 (null) 83 | 11015 282 0 84 | 0 TRBV24-1*01 (null) 85 | 11297 273 0 86 | 0 TRBV25-1*01 (null) 87 | 11570 273 0 88 | 0 TRBV27*01 (null) 89 | 11843 273 0 90 | 0 TRBV28*01 (null) 91 | 12116 273 0 92 | 0 TRBV29-1*01 (null) 93 | 12389 279 0 94 | 0 TRBV29-1*02 (null) 95 | 12668 279 0 96 | 0 TRBV29-1*03 (null) 97 | 12947 222 0 98 | 0 TRBV3-1*01 (null) 99 | 13169 273 0 100 | 0 TRBV3-1*02 (null) 101 | 13442 273 0 102 | 0 TRBV30*01 (null) 103 | 13715 273 0 104 | 0 TRBV30*02 (null) 105 | 13988 273 0 106 | 0 TRBV30*04 (null) 107 | 14261 267 0 108 | 0 TRBV30*05 (null) 109 | 14528 273 0 110 | 0 TRBV4-1*01 (null) 111 | 14801 273 0 112 | 0 TRBV4-1*02 (null) 113 | 15074 246 0 114 | 0 TRBV4-2*01 (null) 115 | 15320 273 0 116 | 0 TRBV4-2*02 (null) 117 | 15593 273 0 118 | 0 TRBV4-3*01 (null) 119 | 15866 273 0 120 | 0 TRBV4-3*02 (null) 121 | 16139 273 0 122 | 0 TRBV4-3*03 (null) 123 | 16412 273 0 124 | 0 TRBV4-3*04 (null) 125 | 16685 222 0 126 | 0 TRBV5-1*01 (null) 127 | 16907 273 0 128 | 0 TRBV5-1*02 (null) 129 | 17180 273 0 130 | 0 TRBV5-4*01 (null) 131 | 17453 273 0 132 | 0 TRBV5-4*02 (null) 133 | 17726 273 0 134 | 0 TRBV5-4*03 (null) 135 | 17999 225 0 136 | 0 TRBV5-4*04 (null) 137 | 18224 183 0 138 | 0 TRBV5-5*01 (null) 139 | 18407 273 0 140 | 0 TRBV5-5*02 (null) 141 | 18680 273 0 142 | 0 TRBV5-5*03 (null) 143 | 18953 273 0 144 | 0 TRBV5-6*01 (null) 145 | 19226 273 0 146 | 0 TRBV5-8*01 (null) 147 | 19499 273 0 148 | 0 TRBV5-8*02 (null) 149 | 19772 229 0 150 | 0 TRBV6-1*01 (null) 151 | 20001 273 0 152 | 0 TRBV6-2*01 (null) 153 | 20274 273 0 154 | 0 TRBV6-3*01 (null) 155 | 20547 273 0 156 | 0 TRBV6-4*01 (null) 157 | 20820 273 0 158 | 0 TRBV6-4*02 (null) 159 | 21093 273 0 160 | 0 TRBV6-5*01 (null) 161 | 21366 273 0 162 | 0 TRBV6-6*01 (null) 163 | 21639 273 0 164 | 0 TRBV6-6*02 (null) 165 | 21912 273 0 166 | 0 TRBV6-6*03 (null) 167 | 22185 273 0 168 | 0 TRBV6-6*04 (null) 169 | 22458 273 0 170 | 0 TRBV6-6*05 (null) 171 | 22731 273 0 172 | 0 TRBV6-8*01 (null) 173 | 23004 270 0 174 | 0 TRBV6-9*01 (null) 175 | 23274 273 0 176 | 0 TRBV7-2*01 (null) 177 | 23547 276 0 178 | 0 TRBV7-2*02 (null) 179 | 23823 276 0 180 | 0 TRBV7-2*03 (null) 181 | 24099 276 0 182 | 0 TRBV7-2*04 (null) 183 | 24375 276 0 184 | 0 TRBV7-3*01 (null) 185 | 24651 276 0 186 | 0 TRBV7-3*02 (null) 187 | 24927 69 0 188 | 0 TRBV7-3*03 (null) 189 | 24996 69 0 190 | 0 TRBV7-3*04 (null) 191 | 25065 276 0 192 | 0 TRBV7-3*05 (null) 193 | 25341 222 0 194 | 0 TRBV7-4*01 (null) 195 | 25563 276 0 196 | 0 TRBV7-6*01 (null) 197 | 25839 276 0 198 | 0 TRBV7-6*02 (null) 199 | 26115 276 0 200 | 0 TRBV7-7*01 (null) 201 | 26391 276 0 202 | 0 TRBV7-7*02 (null) 203 | 26667 276 0 204 | 0 TRBV7-8*01 (null) 205 | 26943 276 0 206 | 0 TRBV7-8*02 (null) 207 | 27219 276 0 208 | 0 TRBV7-8*03 (null) 209 | 27495 276 0 210 | 0 TRBV7-9*01 (null) 211 | 27771 276 0 212 | 0 TRBV7-9*02 (null) 213 | 28047 276 0 214 | 0 TRBV7-9*03 (null) 215 | 28323 276 0 216 | 0 TRBV7-9*04 (null) 217 | 28599 276 0 218 | 0 TRBV7-9*05 (null) 219 | 28875 276 0 220 | 0 TRBV7-9*06 (null) 221 | 29151 276 0 222 | 0 TRBV7-9*07 (null) 223 | 29427 192 0 224 | 0 TRBV9*01 (null) 225 | 29619 273 0 226 | 0 TRBV9*02 (null) 227 | 29892 273 0 228 | 0 TRBV9*03 (null) 229 | 30165 273 0 230 | -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBV-gai5-DNA.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRB/TRBV-gai5-DNA.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBV-gai5-DNA.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRB/TRBV-gai5-DNA.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBV-gai5-DNA.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRB/TRBV-gai5-DNA.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBV-gai6-DNA.fa.amb: -------------------------------------------------------------------------------- 1 | 16789 168 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBV-gai6-DNA.fa.ann: -------------------------------------------------------------------------------- 1 | 16789 168 11 2 | 0 TRBV1*01 (null) 3 | 0 100 0 4 | 0 TRBV10-1*01 (null) 5 | 100 100 0 6 | 0 TRBV10-1*02 (null) 7 | 200 100 0 8 | 0 TRBV10-1*03 (null) 9 | 300 100 0 10 | 0 TRBV10-2*01 (null) 11 | 400 100 0 12 | 0 TRBV10-2*02 (null) 13 | 500 100 0 14 | 0 TRBV10-3*01 (null) 15 | 600 100 0 16 | 0 TRBV10-3*02 (null) 17 | 700 100 0 18 | 0 TRBV10-3*03 (null) 19 | 800 100 0 20 | 0 TRBV10-3*04 (null) 21 | 900 100 0 22 | 0 TRBV11-1*01 (null) 23 | 1000 100 0 24 | 0 TRBV11-2*01 (null) 25 | 1100 100 0 26 | 0 TRBV11-2*02 (null) 27 | 1200 100 0 28 | 0 TRBV11-2*03 (null) 29 | 1300 100 0 30 | 0 TRBV11-3*01 (null) 31 | 1400 100 0 32 | 0 TRBV11-3*02 (null) 33 | 1500 100 0 34 | 0 TRBV11-3*03 (null) 35 | 1600 100 0 36 | 0 TRBV11-3*04 (null) 37 | 1700 100 0 38 | 0 TRBV12-1*01 (null) 39 | 1800 100 0 40 | 0 TRBV12-2*01 (null) 41 | 1900 100 0 42 | 0 TRBV12-3*01 (null) 43 | 2000 100 0 44 | 0 TRBV12-4*01 (null) 45 | 2100 100 0 46 | 0 TRBV12-4*02 (null) 47 | 2200 100 0 48 | 0 TRBV12-5*01 (null) 49 | 2300 100 0 50 | 0 TRBV13*01 (null) 51 | 2400 100 0 52 | 0 TRBV13*02 (null) 53 | 2500 100 0 54 | 0 TRBV14*01 (null) 55 | 2600 100 0 56 | 0 TRBV14*02 (null) 57 | 2700 100 0 58 | 0 TRBV15*01 (null) 59 | 2800 100 0 60 | 0 TRBV15*02 (null) 61 | 2900 100 0 62 | 0 TRBV15*03 (null) 63 | 3000 100 0 64 | 0 TRBV16*01 (null) 65 | 3100 100 0 66 | 0 TRBV16*02 (null) 67 | 3200 100 0 68 | 0 TRBV16*03 (null) 69 | 3300 100 0 70 | 0 TRBV17*01 (null) 71 | 3400 100 0 72 | 0 TRBV17*02 (null) 73 | 3500 100 0 74 | 0 TRBV18*01 (null) 75 | 3600 100 0 76 | 0 TRBV19*01 (null) 77 | 3700 100 0 78 | 0 TRBV19*02 (null) 79 | 3800 100 0 80 | 0 TRBV19*03 (null) 81 | 3900 100 0 82 | 0 TRBV2*01 (null) 83 | 4000 100 0 84 | 0 TRBV2*02 (null) 85 | 4100 100 0 86 | 0 TRBV2*03 (null) 87 | 4200 100 0 88 | 0 TRBV20-1*01 (null) 89 | 4300 100 0 90 | 0 TRBV20-1*02 (null) 91 | 4400 100 0 92 | 0 TRBV20-1*03 (null) 93 | 4500 100 0 94 | 0 TRBV20-1*04 (null) 95 | 4600 100 0 96 | 0 TRBV20-1*05 (null) 97 | 4700 100 0 98 | 0 TRBV20-1*06 (null) 99 | 4800 100 0 100 | 0 TRBV20-1*07 (null) 101 | 4900 100 0 102 | 0 TRBV20/OR9-2*01 (null) 103 | 5000 100 0 104 | 0 TRBV20/OR9-2*02 (null) 105 | 5100 100 0 106 | 0 TRBV20/OR9-2*03 (null) 107 | 5200 100 0 108 | 0 TRBV21-1*01 (null) 109 | 5300 100 0 110 | 0 TRBV21-1*02 (null) 111 | 5400 100 0 112 | 0 TRBV21/OR9-2*01 (null) 113 | 5500 100 0 114 | 0 TRBV22-1*01 (null) 115 | 5600 100 0 116 | 0 TRBV22/OR9-2*01 (null) 117 | 5700 100 0 118 | 0 TRBV23-1*01 (null) 119 | 5800 100 0 120 | 0 TRBV23/OR9-2*01 (null) 121 | 5900 100 0 122 | 0 TRBV23/OR9-2*02 (null) 123 | 6000 100 0 124 | 0 TRBV24-1*01 (null) 125 | 6100 100 0 126 | 0 TRBV24-1*02 (null) 127 | 6200 100 0 128 | 0 TRBV24/OR9-2*01 (null) 129 | 6300 100 0 130 | 0 TRBV24/OR9-2*02 (null) 131 | 6400 100 0 132 | 0 TRBV24/OR9-2*03 (null) 133 | 6500 100 0 134 | 0 TRBV25-1*01 (null) 135 | 6600 100 0 136 | 0 TRBV25/OR9-2*01 (null) 137 | 6700 100 0 138 | 0 TRBV25/OR9-2*02 (null) 139 | 6800 100 0 140 | 0 TRBV26*01 (null) 141 | 6900 100 0 142 | 0 TRBV26/OR9-2*01 (null) 143 | 7000 100 0 144 | 0 TRBV26/OR9-2*02 (null) 145 | 7100 100 0 146 | 0 TRBV27*01 (null) 147 | 7200 100 0 148 | 0 TRBV28*01 (null) 149 | 7300 100 0 150 | 0 TRBV29-1*01 (null) 151 | 7400 100 0 152 | 0 TRBV29-1*02 (null) 153 | 7500 100 0 154 | 0 TRBV29-1*03 (null) 155 | 7600 100 0 156 | 0 TRBV29/OR9-2*01 (null) 157 | 7700 100 0 158 | 0 TRBV29/OR9-2*02 (null) 159 | 7800 100 0 160 | 0 TRBV3-1*01 (null) 161 | 7900 100 0 162 | 0 TRBV3-1*02 (null) 163 | 8000 100 0 164 | 0 TRBV3-2*01 (null) 165 | 8100 100 0 166 | 0 TRBV3-2*02 (null) 167 | 8200 100 0 168 | 0 TRBV3-2*03 (null) 169 | 8300 100 0 170 | 0 TRBV30*01 (null) 171 | 8400 100 0 172 | 0 TRBV30*02 (null) 173 | 8500 100 0 174 | 0 TRBV30*03 (null) 175 | 8600 100 0 176 | 0 TRBV30*04 (null) 177 | 8700 100 0 178 | 0 TRBV30*05 (null) 179 | 8800 100 0 180 | 0 TRBV4-1*01 (null) 181 | 8900 100 0 182 | 0 TRBV4-1*02 (null) 183 | 9000 100 0 184 | 0 TRBV4-2*01 (null) 185 | 9100 100 0 186 | 0 TRBV4-2*02 (null) 187 | 9200 100 0 188 | 0 TRBV4-3*01 (null) 189 | 9300 100 0 190 | 0 TRBV4-3*02 (null) 191 | 9400 100 0 192 | 0 TRBV4-3*03 (null) 193 | 9500 100 0 194 | 0 TRBV4-3*04 (null) 195 | 9600 100 0 196 | 0 TRBV5-1*01 (null) 197 | 9700 100 0 198 | 0 TRBV5-1*02 (null) 199 | 9800 100 0 200 | 0 TRBV5-2*01 (null) 201 | 9900 100 0 202 | 0 TRBV5-3*01 (null) 203 | 10000 100 0 204 | 0 TRBV5-3*02 (null) 205 | 10100 100 0 206 | 0 TRBV5-4*01 (null) 207 | 10200 100 0 208 | 0 TRBV5-4*02 (null) 209 | 10300 100 0 210 | 0 TRBV5-4*03 (null) 211 | 10400 100 0 212 | 0 TRBV5-4*04 (null) 213 | 10500 100 0 214 | 0 TRBV5-5*01 (null) 215 | 10600 100 0 216 | 0 TRBV5-5*02 (null) 217 | 10700 100 0 218 | 0 TRBV5-5*03 (null) 219 | 10800 100 0 220 | 0 TRBV5-6*01 (null) 221 | 10900 100 0 222 | 0 TRBV5-7*01 (null) 223 | 11000 100 0 224 | 0 TRBV5-8*01 (null) 225 | 11100 100 0 226 | 0 TRBV5-8*02 (null) 227 | 11200 100 0 228 | 0 TRBV6-1*01 (null) 229 | 11300 100 0 230 | 0 TRBV6-2*01 (null) 231 | 11400 100 0 232 | 0 TRBV6-3*01 (null) 233 | 11500 100 0 234 | 0 TRBV6-4*01 (null) 235 | 11600 100 0 236 | 0 TRBV6-4*02 (null) 237 | 11700 100 0 238 | 0 TRBV6-5*01 (null) 239 | 11800 100 0 240 | 0 TRBV6-6*01 (null) 241 | 11900 100 0 242 | 0 TRBV6-6*02 (null) 243 | 12000 100 0 244 | 0 TRBV6-6*03 (null) 245 | 12100 100 0 246 | 0 TRBV6-6*04 (null) 247 | 12200 100 0 248 | 0 TRBV6-6*05 (null) 249 | 12300 100 0 250 | 0 TRBV6-7*01 (null) 251 | 12400 100 0 252 | 0 TRBV6-8*01 (null) 253 | 12500 100 0 254 | 0 TRBV6-9*01 (null) 255 | 12600 100 0 256 | 0 TRBV7-1*01 (null) 257 | 12700 100 0 258 | 0 TRBV7-2*01 (null) 259 | 12800 100 0 260 | 0 TRBV7-2*02 (null) 261 | 12900 100 0 262 | 0 TRBV7-2*03 (null) 263 | 13000 100 0 264 | 0 TRBV7-2*04 (null) 265 | 13100 100 0 266 | 0 TRBV7-3*01 (null) 267 | 13200 100 0 268 | 0 TRBV7-3*02 (null) 269 | 13300 100 0 270 | 0 TRBV7-3*03 (null) 271 | 13400 100 0 272 | 0 TRBV7-3*04 (null) 273 | 13500 100 0 274 | 0 TRBV7-3*05 (null) 275 | 13600 100 0 276 | 0 TRBV7-4*01 (null) 277 | 13700 100 0 278 | 0 TRBV7-4*02 (null) 279 | 13800 100 0 280 | 0 TRBV7-5*01 (null) 281 | 13900 100 0 282 | 0 TRBV7-5*02 (null) 283 | 14000 100 0 284 | 0 TRBV7-6*01 (null) 285 | 14100 100 0 286 | 0 TRBV7-6*02 (null) 287 | 14200 100 0 288 | 0 TRBV7-7*01 (null) 289 | 14300 100 0 290 | 0 TRBV7-7*02 (null) 291 | 14400 100 0 292 | 0 TRBV7-8*01 (null) 293 | 14500 100 0 294 | 0 TRBV7-8*02 (null) 295 | 14600 100 0 296 | 0 TRBV7-8*03 (null) 297 | 14700 100 0 298 | 0 TRBV7-9*01 (null) 299 | 14800 100 0 300 | 0 TRBV7-9*02 (null) 301 | 14900 100 0 302 | 0 TRBV7-9*03 (null) 303 | 15000 100 0 304 | 0 TRBV7-9*04 (null) 305 | 15100 100 0 306 | 0 TRBV7-9*05 (null) 307 | 15200 100 0 308 | 0 TRBV7-9*06 (null) 309 | 15300 100 0 310 | 0 TRBV7-9*07 (null) 311 | 15400 100 0 312 | 0 TRBV8-1*01 (null) 313 | 15500 100 0 314 | 0 TRBV8-1*02 (null) 315 | 15600 100 0 316 | 0 TRBV8-2*01 (null) 317 | 15700 100 0 318 | 0 TRBV8-2*02 (null) 319 | 15800 100 0 320 | 0 TRBV9*01 (null) 321 | 15900 100 0 322 | 0 TRBV9*02 (null) 323 | 16000 100 0 324 | 0 TRBV9*03 (null) 325 | 16100 100 0 326 | 0 TRBVA*01 (null) 327 | 16200 100 0 328 | 0 TRBVA*02 (null) 329 | 16300 100 0 330 | 0 TRBVA/OR9-2*01 (null) 331 | 16400 100 0 332 | 0 TRBVB*01 (null) 333 | 16500 100 0 334 | 0 TRBVB*02 (null) 335 | 16600 100 0 336 | 0 TRBVC*01 (null) 337 | 16700 89 0 338 | -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBV-gai6-DNA.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRB/TRBV-gai6-DNA.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBV-gai6-DNA.fa.fai: -------------------------------------------------------------------------------- 1 | TRBV1*01 100 10 100 101 2 | TRBV10-1*01 100 124 100 101 3 | TRBV10-1*02 100 238 100 101 4 | TRBV10-1*03 100 352 100 101 5 | TRBV10-2*01 100 466 100 101 6 | TRBV10-2*02 100 580 100 101 7 | TRBV10-3*01 100 694 100 101 8 | TRBV10-3*02 100 808 100 101 9 | TRBV10-3*03 100 922 100 101 10 | TRBV10-3*04 100 1036 100 101 11 | TRBV11-1*01 100 1150 100 101 12 | TRBV11-2*01 100 1264 100 101 13 | TRBV11-2*02 100 1378 100 101 14 | TRBV11-2*03 100 1492 100 101 15 | TRBV11-3*01 100 1606 100 101 16 | TRBV11-3*02 100 1720 100 101 17 | TRBV11-3*03 100 1834 100 101 18 | TRBV11-3*04 100 1948 100 101 19 | TRBV12-1*01 100 2062 100 101 20 | TRBV12-2*01 100 2176 100 101 21 | TRBV12-3*01 100 2290 100 101 22 | TRBV12-4*01 100 2404 100 101 23 | TRBV12-4*02 100 2518 100 101 24 | TRBV12-5*01 100 2632 100 101 25 | TRBV13*01 100 2744 100 101 26 | TRBV13*02 100 2856 100 101 27 | TRBV14*01 100 2968 100 101 28 | TRBV14*02 100 3080 100 101 29 | TRBV15*01 100 3192 100 101 30 | TRBV15*02 100 3304 100 101 31 | TRBV15*03 100 3416 100 101 32 | TRBV16*01 100 3528 100 101 33 | TRBV16*02 100 3640 100 101 34 | TRBV16*03 100 3752 100 101 35 | TRBV17*01 100 3864 100 101 36 | TRBV17*02 100 3976 100 101 37 | TRBV18*01 100 4088 100 101 38 | TRBV19*01 100 4200 100 101 39 | TRBV19*02 100 4312 100 101 40 | TRBV19*03 100 4424 100 101 41 | TRBV2*01 100 4535 100 101 42 | TRBV2*02 100 4646 100 101 43 | TRBV2*03 100 4757 100 101 44 | TRBV20-1*01 100 4871 100 101 45 | TRBV20-1*02 100 4985 100 101 46 | TRBV20-1*03 100 5099 100 101 47 | TRBV20-1*04 100 5213 100 101 48 | TRBV20-1*05 100 5327 100 101 49 | TRBV20-1*06 100 5441 100 101 50 | TRBV20-1*07 100 5555 100 101 51 | TRBV20/OR9-2*01 100 5673 100 101 52 | TRBV20/OR9-2*02 100 5791 100 101 53 | TRBV20/OR9-2*03 100 5909 100 101 54 | TRBV21-1*01 100 6023 100 101 55 | TRBV21-1*02 100 6137 100 101 56 | TRBV21/OR9-2*01 100 6255 100 101 57 | TRBV22-1*01 100 6369 100 101 58 | TRBV22/OR9-2*01 100 6487 100 101 59 | TRBV23-1*01 100 6601 100 101 60 | TRBV23/OR9-2*01 100 6719 100 101 61 | TRBV23/OR9-2*02 100 6837 100 101 62 | TRBV24-1*01 100 6951 100 101 63 | TRBV24-1*02 100 7065 100 101 64 | TRBV24/OR9-2*01 100 7183 100 101 65 | TRBV24/OR9-2*02 100 7301 100 101 66 | TRBV24/OR9-2*03 100 7419 100 101 67 | TRBV25-1*01 100 7533 100 101 68 | TRBV25/OR9-2*01 100 7651 100 101 69 | TRBV25/OR9-2*02 100 7769 100 101 70 | TRBV26*01 100 7881 100 101 71 | TRBV26/OR9-2*01 100 7999 100 101 72 | TRBV26/OR9-2*02 100 8117 100 101 73 | TRBV27*01 100 8229 100 101 74 | TRBV28*01 100 8341 100 101 75 | TRBV29-1*01 100 8455 100 101 76 | TRBV29-1*02 100 8569 100 101 77 | TRBV29-1*03 100 8683 100 101 78 | TRBV29/OR9-2*01 100 8801 100 101 79 | TRBV29/OR9-2*02 100 8919 100 101 80 | TRBV3-1*01 100 9032 100 101 81 | TRBV3-1*02 100 9145 100 101 82 | TRBV3-2*01 100 9258 100 101 83 | TRBV3-2*02 100 9371 100 101 84 | TRBV3-2*03 100 9484 100 101 85 | TRBV30*01 100 9596 100 101 86 | TRBV30*02 100 9708 100 101 87 | TRBV30*03 100 9820 100 101 88 | TRBV30*04 100 9932 100 101 89 | TRBV30*05 100 10044 100 101 90 | TRBV4-1*01 100 10157 100 101 91 | TRBV4-1*02 100 10270 100 101 92 | TRBV4-2*01 100 10383 100 101 93 | TRBV4-2*02 100 10496 100 101 94 | TRBV4-3*01 100 10609 100 101 95 | TRBV4-3*02 100 10722 100 101 96 | TRBV4-3*03 100 10835 100 101 97 | TRBV4-3*04 100 10948 100 101 98 | TRBV5-1*01 100 11061 100 101 99 | TRBV5-1*02 100 11174 100 101 100 | TRBV5-2*01 100 11287 100 101 101 | TRBV5-3*01 100 11400 100 101 102 | TRBV5-3*02 100 11513 100 101 103 | TRBV5-4*01 100 11626 100 101 104 | TRBV5-4*02 100 11739 100 101 105 | TRBV5-4*03 100 11852 100 101 106 | TRBV5-4*04 100 11965 100 101 107 | TRBV5-5*01 100 12078 100 101 108 | TRBV5-5*02 100 12191 100 101 109 | TRBV5-5*03 100 12304 100 101 110 | TRBV5-6*01 100 12417 100 101 111 | TRBV5-7*01 100 12530 100 101 112 | TRBV5-8*01 100 12643 100 101 113 | TRBV5-8*02 100 12756 100 101 114 | TRBV6-1*01 100 12869 100 101 115 | TRBV6-2*01 100 12982 100 101 116 | TRBV6-3*01 100 13095 100 101 117 | TRBV6-4*01 100 13208 100 101 118 | TRBV6-4*02 100 13321 100 101 119 | TRBV6-5*01 100 13434 100 101 120 | TRBV6-6*01 100 13547 100 101 121 | TRBV6-6*02 100 13660 100 101 122 | TRBV6-6*03 100 13773 100 101 123 | TRBV6-6*04 100 13886 100 101 124 | TRBV6-6*05 100 13999 100 101 125 | TRBV6-7*01 100 14112 100 101 126 | TRBV6-8*01 100 14225 100 101 127 | TRBV6-9*01 100 14338 100 101 128 | TRBV7-1*01 100 14451 100 101 129 | TRBV7-2*01 100 14564 100 101 130 | TRBV7-2*02 100 14677 100 101 131 | TRBV7-2*03 100 14790 100 101 132 | TRBV7-2*04 100 14903 100 101 133 | TRBV7-3*01 100 15016 100 101 134 | TRBV7-3*02 100 15129 100 101 135 | TRBV7-3*03 100 15242 100 101 136 | TRBV7-3*04 100 15355 100 101 137 | TRBV7-3*05 100 15468 100 101 138 | TRBV7-4*01 100 15581 100 101 139 | TRBV7-4*02 100 15694 100 101 140 | TRBV7-5*01 100 15807 100 101 141 | TRBV7-5*02 100 15920 100 101 142 | TRBV7-6*01 100 16033 100 101 143 | TRBV7-6*02 100 16146 100 101 144 | TRBV7-7*01 100 16259 100 101 145 | TRBV7-7*02 100 16372 100 101 146 | TRBV7-8*01 100 16485 100 101 147 | TRBV7-8*02 100 16598 100 101 148 | TRBV7-8*03 100 16711 100 101 149 | TRBV7-9*01 100 16824 100 101 150 | TRBV7-9*02 100 16937 100 101 151 | TRBV7-9*03 100 17050 100 101 152 | TRBV7-9*04 100 17163 100 101 153 | TRBV7-9*05 100 17276 100 101 154 | TRBV7-9*06 100 17389 100 101 155 | TRBV7-9*07 100 17502 100 101 156 | TRBV8-1*01 100 17615 100 101 157 | TRBV8-1*02 100 17728 100 101 158 | TRBV8-2*01 100 17841 100 101 159 | TRBV8-2*02 100 17954 100 101 160 | TRBV9*01 100 18065 100 101 161 | TRBV9*02 100 18176 100 101 162 | TRBV9*03 100 18287 100 101 163 | TRBVA*01 100 18398 100 101 164 | TRBVA*02 100 18509 100 101 165 | TRBVA/OR9-2*01 100 18626 100 101 166 | TRBVB*01 100 18737 100 101 167 | TRBVB*02 100 18848 100 101 168 | TRBVC*01 89 18959 89 90 169 | -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBV-gai6-DNA.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRB/TRBV-gai6-DNA.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRB/TRBV-gai6-DNA.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRB/TRBV-gai6-DNA.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRD/SRR11799691.sra: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRD/SRR11799691.sra -------------------------------------------------------------------------------- /resource/TR/hs/TRDJ.fa: -------------------------------------------------------------------------------- 1 | >M20289|TRDJ1*01|Homo sapiens|F|J-REGION|51..101|51 nt|3| | | | |51+0=51| | | 2 | acaccgataaactcatctttggaaaaggaacccgtgtgactgtggaaccaa 3 | >L36386|TRDJ2*01|Homo sapiens|F|J-REGION|39..92|54 nt|3| | | | |54+0=54| | | 4 | ctttgacagcacaactcttctttggaaagggaacacaactcatcgtggaaccag 5 | >M21508|TRDJ3*01|Homo sapiens|F|J-REGION|735..793|59 nt|2| | | | |59+0=59| | | 6 | ctcctgggacacccgacagatgtttttcggaactggcatcaaactcttcgtggagcccc 7 | >AJ249814|TRDJ4*01|Homo sapiens|F|J-REGION|1..48|48 nt|3| | | | |48+0=48| | | 8 | ccagacccctgatctttggcaaaggaacctatctggaggtacaacaac -------------------------------------------------------------------------------- /resource/TR/hs/TRDJ.fa.amb: -------------------------------------------------------------------------------- 1 | 212 4 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRDJ.fa.ann: -------------------------------------------------------------------------------- 1 | 212 4 11 2 | 0 M20289|TRDJ1*01|Homo sapiens|F|J-REGION|51..101|51 nt|3| | | | |51+0=51| | | 3 | 0 51 0 4 | 0 L36386|TRDJ2*01|Homo sapiens|F|J-REGION|39..92|54 nt|3| | | | |54+0=54| | | 5 | 51 54 0 6 | 0 M21508|TRDJ3*01|Homo sapiens|F|J-REGION|735..793|59 nt|2| | | | |59+0=59| | | 7 | 105 59 0 8 | 0 AJ249814|TRDJ4*01|Homo sapiens|F|J-REGION|1..48|48 nt|3| | | | |48+0=48| | | 9 | 164 48 0 10 | -------------------------------------------------------------------------------- /resource/TR/hs/TRDJ.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRDJ.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRDJ.fa.fai: -------------------------------------------------------------------------------- 1 | M20289|TRDJ1*01|Homo 51 78 51 52 2 | L36386|TRDJ2*01|Homo 54 207 54 55 3 | M21508|TRDJ3*01|Homo 59 341 59 60 4 | AJ249814|TRDJ4*01|Homo 48 479 48 49 5 | -------------------------------------------------------------------------------- /resource/TR/hs/TRDJ.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRDJ.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRDJ.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRDJ.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRDV.fa: -------------------------------------------------------------------------------- 1 | >M21626|TRAV14/DV4*01|Homo sapiens|F|V-REGION|226..515|290 nt|1| | | | |290+0=290| | | 2 | gcccagaagataactcaaacccaaccaggaatgttcgtgcaggaaaaggaggctgtgact 3 | ctggactgcacatatgacaccagtgatccaagttatggtctattctggtacaagcagccc 4 | agcagtggggaaatgatttttcttatttatcaggggtcttatgaccagcaaaatgcaaca 5 | gaaggtcgctactcattgaatttccagaaggcaagaaaatccgccaaccttgtcatctcc 6 | gcttcacaactgggggactcagcaatgtacttctgtgcaatgagagaggg 7 | >AE000659|TRAV14/DV4*02|Homo sapiens|F|V-REGION|179711..180000|290 nt|1| | | | |290+0=290| | | 8 | gcccagaagataactcaaacccaaccaggaatgttcgtgcaggaaaaggaggctgtgact 9 | ctggactgcacatatgacaccagtgatcaaagttatggtctattctggtacaagcagccc 10 | agcagtggggaaatgatttttcttatttatcaggggtcttatgacgagcaaaatgcaaca 11 | gaaggtcgctactcattgaatttccagaaggcaagaaaatccgccaaccttgtcatctcc 12 | gcttcacaactgggggactcagcaatgtatttctgtgcaatgagagaggg 13 | >M21624|TRAV14/DV4*03|Homo sapiens|(F)|V-REGION|131..412|282 nt|1| | | | |282+0=282| | | 14 | gcccagaagataactcaaacccaaccaggaatgttcgtgcaggaaaaggaggctgtgact 15 | ctggactgcacatatgacaccagtgatccaagttatggtctattctggtacaagcagccc 16 | agcagtggggaaatgatttttcttatttatcaggggtcttatgaccagcaaaatgcaaca 17 | gaaggtcgctactcattgaatttccagaaggcaagaaaatccgccaaccttgtcatctcc 18 | gcttcacaactgggggactcagcaatgtatttctgtgcaatg 19 | >L09758|TRAV14/DV4*04|Homo sapiens|[F]|V-REGION|1..271|271 nt|1| | || |271+0=271|partial in 5' and in 3' | | 20 | cagaagataactcaaacccaaccaggaatgttcgtgcaggaaaaggaggctgtgactctg 21 | gactgcacatatgacaccagtgatcaaagttatggtctcttctggtacaagcagcccagc 22 | agtggggaaatgatttttcttatttatcaggggtcttatgacgagcaaaatgcaacagaa 23 | ggtcgctactcattgaatttccagaaggcaagaaaatccgccaaccttgtcatctccgct 24 | tcacaactgggggactcagcaatgtacttct 25 | >AE000660|TRAV23/DV6*01|Homo sapiens|F|V-REGION|90991..91270|280 nt|1| | || |280+0=280| | | 26 | cagcagcaggtgaaacaaagtcctcaatctttgatagtccagaaaggagggatttcaatt 27 | ataaactgtgcttatgagaacactgcgtttgactactttccatggtaccaacaattccct 28 | gggaaaggccctgcattattgatagccatacgtccagatgtgagtgaaaagaaagaagga 29 | agattcacaatctccttcaataaaagtgccaagcagttctcattgcatatcatggattcc 30 | cagcctggagactcagccacctacttctgtgcagcaagca 31 | >M17660|TRAV23/DV6*02|Homo sapiens|(F)|V-REGION|85..364|280 nt|1| | || |280+0=280| | | 32 | cagcagcaggtgaaacaaagtcctcaatctttgatagtccagaaaggagggattccaatt 33 | ataaactgtgcttatgagaacactgcgtttgactactttccatggtaccaacaattccct 34 | gggaaaggccctgcattattgatagccatacgtccagatgtgagtgaaaagaaagaagga 35 | agattcacaatctccttcaataaaagtgccaagcagttctcattgcatatcatggattcc 36 | cagcctggagactcagccacctacttctgtgcagcaagcg 37 | >M97704|TRAV23/DV6*03|Homo sapiens|(F)|V-REGION|145..424|280 nt|1| | || |280+0=280| | | 38 | cagcagcaggtgaaacaaagtcctcaatctttgatagtccagaaaggagggatttcaatt 39 | ataaactgtgcttatgagaacactgcgtttgactactttccatggtaccaacagttccct 40 | gggaaaggccctgcattattgatagccatacgtccagatgtgagtgaaaagaaagaagga 41 | agattcacaatctccttcaataaaagtgccaagcagttctcattgcatatcatggattcc 42 | cagcctggagactcagccacctacttctgtgcagcaagca 43 | >Y10411|TRAV23/DV6*04|Homo sapiens|[F]|V-REGION|1..267|267 nt|1| | | | |267+0=267|partial in 5' and in 3' | | 44 | cagcaggtgaaacaaagtcctcaatctttgatagtccagaaaggagggatttcaattata 45 | aactgtgcttatgagaacactgcgtttgactactttccatggtaccagcaattccctggg 46 | aaaggccctgcattattgatagccatacgtccagatgtgagtgaaaagaaagaaggaaga 47 | ttcacaatctccttcaataaaagtgccaagcagttctcattgcatatcatggattcccag 48 | cctggagactcagccacctacttctgt 49 | >IMGT000024|TRAV23/DV6*05|Homo sapiens|F|V-REGION|474779..475058|280 nt|1| | | | |280+0=280| | | 50 | cagcagcaggtgaaacaaagtcctcaatctttgatagtccagaaaggagggatttcaatt 51 | ataaactgtgcttatgagaacactgcgtttgactactttccatggtaccaacaattccct 52 | gggaaaggccctgcattattgatagccatacgtccagatgtgagtgaaaagaaagaagga 53 | agattcacaatctccttcaataaaagtgccaagcagttctcatcgcatatcatggattcc 54 | cagcctggagactcagccacctacttctgtgcagcaagca 55 | >AE000660|TRAV29/DV5*01|Homo sapiens|F|V-REGION|167519..167798|280 nt|1| | | | |280+0=280| | | 56 | gaccagcaagttaagcaaaattcaccatccctgagcgtccaggaaggaagaatttctatt 57 | ctgaactgtgactatactaacagcatgtttgattatttcctatggtacaaaaaataccct 58 | gctgaaggtcctacattcctgatatctataagttccattaaggataaaaatgaagatgga 59 | agattcactgtcttcttaaacaaaagtgccaagcacctctctctgcacattgtgccctcc 60 | cagcctggagactctgcagtgtacttctgtgcagcaagcg 61 | >S81645|TRAV29/DV5*02|Homo sapiens|F|V-REGION|174..452|279 nt|1| | | | |279+0=279| | | 62 | gaccagcaagttaagcaaaattcaccatccctgagcgtccaggaaggaagaatttctatt 63 | ctgaactgtgactatactaacagcatgtttgattatttcctatggtacaaaaaataccct 64 | gctgaaggtcctacattcctgatatctataagttccattaaggataaaaatgaagatgga 65 | agattcactgttttcttaaacaaaagtgccaagcacctctctctcgacattgtgccctcc 66 | cagcctggagactctgcagtgtacttctgtgcagcaagc 67 | >IMGT000024|TRAV29/DV5*04|Homo sapiens|F|V-REGION|551688..551967|280 nt|1| | | | |280+0=280| | | 68 | gaccagcaagttaagcaaaattcaccatccctgagcgtccaggaaggaagaatttctatt 69 | ctgaactgtgactatactaacagcatgtttgattatttcctatggtacaaaaaataccct 70 | gctgaaggtcctacattcctgatatctataagttccattaaggataaaaatgaagatgga 71 | agattcactgttttcttaaacaaaagtgccaagcacctctctctgcacattgtgccctcc 72 | cagcctggagactctgcagtgtacttctgtgcagcaagcg 73 | >AE000660|TRAV36/DV7*01|Homo sapiens|F|V-REGION|230905..231181|277 nt|1| | | | |277+0=277| | | 74 | gaagacaaggtggtacaaagccctctatctctggttgtccacgagggagacaccgtaact 75 | ctcaattgcagttatgaagtgactaactttcgaagcctactatggtacaagcaggaaaag 76 | aaagctcccacatttctatttatgctaacttcaagtggaattgaaaagaagtcaggaaga 77 | ctaagtagcatattagataagaaagaactttccagcatcctgaacatcacagccacccag 78 | accggagactcggccatctacctctgtgctgtggagg 79 | >X61070|TRAV36/DV7*02|Homo sapiens|(F)|V-REGION|7..280|274 nt|1| | | | |274+0=274| | | 80 | gaagacaaggtggtacaaagccctcaatctctggttgtccacgagggagacactgtaact 81 | ctcaattgcagttatgaaatgactaactttcgaagcctacaatggtacaagcaggaaaag 82 | aaagctcccacatttctatttatgctaacttcaagtggaattgaaaagaagtcaggaaga 83 | ctaagtagcatattagataagaaagaacttttcagcatcctgaacatcacagccacccag 84 | accggagactcggccgtctacctctgtgctgtgg 85 | >X58767|TRAV36/DV7*03|Homo sapiens|(F)|V-REGION|109..378|270 nt|1| | || |270+0=270|partial in 3'| | 86 | gaagacaaggtggtacaaagccctctatctctggttgtccacgagggagacactgtaact 87 | cccaattgcagttatgaagtgactaactttcgaagcctactatggtacaagcaggaaaag 88 | aaagctcccacatttctatttatgctaacttcaagtggaattgaaaagaagtcaggaaga 89 | ctaagtagcatattagataagaaagaacttttcagcatcctgaacatcacagccacccag 90 | accggagactcggccgtctacctctgtgct 91 | >Z46643|TRAV36/DV7*04|Homo sapiens|(F)|V-REGION|87..357|271 nt|1| | | | |271+0=271| | | 92 | gaagacaaggtggtacaaagccctctatctctggttgtccacgagggagacactgtaact 93 | ctcaattgcagttatgaagtgactaactttcgaagcctactatggtacaagcaggaaaag 94 | aaagctcccacatttctatttatgctaacttcaagtggaattgaaaagaagtcaggaaga 95 | ctaagtagcatattagataagaaagaacttttcagcatcctgaacatcacagccacccag 96 | accggagactcggccgtctacctctgtgctg 97 | >IMGT000024|TRAV36/DV7*05|Homo sapiens|F|V-REGION|615075..615351|277 nt|1| | | | |277+0=277| | | 98 | gaagacaaggtggtacaaagccctctatctctggttgtccacgagggagacaccgtaact 99 | ctcaattgcagttatgaagtgactaactttcgaagcctactatggtacaagcaggaaaag 100 | aaagctcccacatttctatttatgctaacttcaagtggaattgaaaagaagtcaggaaga 101 | ctaagtagcatattagataagaaagaacttttcagcatcctgaacatcacagccacccag 102 | accggagactcggccatctacctctgtgctgtggagg 103 | >AE000661|TRAV38-2/DV8*01|Homo sapiens|F|V-REGION|34309..34597|289 nt|1| | | | |289+0=289| | | 104 | gctcagacagtcactcagtctcaaccagagatgtctgtgcaggaggcagagaccgtgacc 105 | ctgagctgcacatatgacaccagtgagagtgattattatttattctggtacaagcagcct 106 | cccagcaggcagatgattctcgttattcgccaagaagcttataagcaacagaatgcaaca 107 | gagaatcgtttctctgtgaacttccagaaagcagccaaatccttcagtctcaagatctca 108 | gactcacagctgggggatgccgcgatgtatttctgtgcttataggagcg 109 | >M22198|TRDV1*01|Homo sapiens|F|V-REGION|363..649|287 nt|1| | | | |287+0=287| | | 110 | gcccagaaggttactcaagcccagtcatcagtatccatgccagtgaggaaagcagtcacc 111 | ctgaactgcctgtatgaaacaagttggtggtcatattatattttttggtacaagcaactt 112 | cccagcaaagagatgattttccttattcgccagggttctgatgaacagaatgcaaaaagt 113 | ggtcgctattctgtcaacttcaagaaagcagcgaaatccgtcgccttaaccatttcagcc 114 | ttacagctagaagattcagcaaagtacttttgtgctcttggggaact 115 | >X15207|TRDV2*01|Homo sapiens|F|V-REGION|208..495|288 nt|1| | | | |288+0=288| | | 116 | gccattgagttggtgcctgaacaccaaacagtgcctgtgtcaataggggtccctgccacc 117 | ctcaggtgctccatgaaaggagaagcgatcggtaactactatatcaactggtacaggaag 118 | acccaaggtaacacaatcactttcatataccgagaaaaggacatctatggccctggtttc 119 | aaagacaatttccaaggtgacattgatattgcaaagaacctggctgtacttaagatactt 120 | gcaccatcagagagagatgaagggtcttactactgtgcctgtgacacc 121 | >Y13426|TRDV2*02|Homo sapiens|F|V-REGION|1..283|283 nt|1| | || |283+0=283|partial in 5' and in 3' | | 122 | attgagttggtgcctgaacaccaaacagtgcctgtgtcaatagggatccctgccaccctc 123 | aggtgctccatgaaaggagaagcgatcggtaactactatatcaactggtacaggaagacc 124 | caaggtaacacaatcactttcatataccgagaaaaggacatctatggccctggtttcaaa 125 | gacaatttccaaggtgacattgatattgcaaagaacctggctgtacttaagatacttgca 126 | ccatcagagagagatgaagggtcttactactgtgcctgtgaca 127 | >AE000661|TRDV2*03|Homo sapiens|F|V-REGION|176712..176999|288 nt|1| | | | |288+0=288| | | 128 | gccattgagttggtgcctgaacaccaaacagtgcctgtgtcaataggggtccctgccacc 129 | ctcaggtgctccatgaaaggagaagcgatcggtaactactatatcaactggtacaggaag 130 | acccaaggtaacacaatgactttcatataccgagaaaaggacatctatggccctggtttc 131 | aaagacaatttccaaggtgacattgatattgcaaagaacctggctgtacttaagatactt 132 | gcaccatcagagagagatgaagggtcttactactgtgcctgtgacacc 133 | >M23326|TRDV3*01|Homo sapiens|F|V-REGION|303..592|290 nt|1| | || |290+0=290| | | 134 | tgtgacaaagtaacccagagttccccggaccagacggtggcgagtggcagtgaggtggta 135 | ctgctctgcacttacgacactgtatattcaaatccagatttattctggtaccggataagg 136 | ccagattattcctttcagtttgtcttttatggggataacagcagatcagaaggtgcagat 137 | tttactcaaggacggttttctgtgaaacacattctgacccagaaagcctttcacttggtg 138 | atctctccagtaaggactgaagacagtgccacttactactgtgcctttag 139 | >X15261|TRDV3*02|Homo sapiens|F|V-REGION|316..605|290 nt|1| | || |290+0=290| | | 140 | tgtgacaaagtaacccagagttccccggaccagacggtggcgagtggcagtgaggtggta 141 | ctgctctgcacttacgacactgtatattcaaatccagatttattctggtactggataagg 142 | ccagattattcctttcagtttgtcttttatggggataacagcagatcagaaggtgcagat 143 | tttactcaaggacggttttctgtgaaacacattctgacccagaaagcctttcacttggtg 144 | atctctccagtaaggactgaagacagtgccacttactactgtgcctttag -------------------------------------------------------------------------------- /resource/TR/hs/TRDV.fa.amb: -------------------------------------------------------------------------------- 1 | 6743 24 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRDV.fa.ann: -------------------------------------------------------------------------------- 1 | 6743 24 11 2 | 0 M21626|TRAV14/DV4*01|Homo sapiens|F|V-REGION|226..515|290 nt|1| | | | |290+0=290| | | 3 | 0 290 0 4 | 0 AE000659|TRAV14/DV4*02|Homo sapiens|F|V-REGION|179711..180000|290 nt|1| | | | |290+0=290| | | 5 | 290 290 0 6 | 0 M21624|TRAV14/DV4*03|Homo sapiens|(F)|V-REGION|131..412|282 nt|1| | | | |282+0=282| | | 7 | 580 282 0 8 | 0 L09758|TRAV14/DV4*04|Homo sapiens|[F]|V-REGION|1..271|271 nt|1| | || |271+0=271|partial in 5' and in 3' | | 9 | 862 271 0 10 | 0 AE000660|TRAV23/DV6*01|Homo sapiens|F|V-REGION|90991..91270|280 nt|1| | || |280+0=280| | | 11 | 1133 280 0 12 | 0 M17660|TRAV23/DV6*02|Homo sapiens|(F)|V-REGION|85..364|280 nt|1| | || |280+0=280| | | 13 | 1413 280 0 14 | 0 M97704|TRAV23/DV6*03|Homo sapiens|(F)|V-REGION|145..424|280 nt|1| | || |280+0=280| | | 15 | 1693 280 0 16 | 0 Y10411|TRAV23/DV6*04|Homo sapiens|[F]|V-REGION|1..267|267 nt|1| | | | |267+0=267|partial in 5' and in 3' | | 17 | 1973 267 0 18 | 0 IMGT000024|TRAV23/DV6*05|Homo sapiens|F|V-REGION|474779..475058|280 nt|1| | | | |280+0=280| | | 19 | 2240 280 0 20 | 0 AE000660|TRAV29/DV5*01|Homo sapiens|F|V-REGION|167519..167798|280 nt|1| | | | |280+0=280| | | 21 | 2520 280 0 22 | 0 S81645|TRAV29/DV5*02|Homo sapiens|F|V-REGION|174..452|279 nt|1| | | | |279+0=279| | | 23 | 2800 279 0 24 | 0 IMGT000024|TRAV29/DV5*04|Homo sapiens|F|V-REGION|551688..551967|280 nt|1| | | | |280+0=280| | | 25 | 3079 280 0 26 | 0 AE000660|TRAV36/DV7*01|Homo sapiens|F|V-REGION|230905..231181|277 nt|1| | | | |277+0=277| | | 27 | 3359 277 0 28 | 0 X61070|TRAV36/DV7*02|Homo sapiens|(F)|V-REGION|7..280|274 nt|1| | | | |274+0=274| | | 29 | 3636 274 0 30 | 0 X58767|TRAV36/DV7*03|Homo sapiens|(F)|V-REGION|109..378|270 nt|1| | || |270+0=270|partial in 3'| | 31 | 3910 270 0 32 | 0 Z46643|TRAV36/DV7*04|Homo sapiens|(F)|V-REGION|87..357|271 nt|1| | | | |271+0=271| | | 33 | 4180 271 0 34 | 0 IMGT000024|TRAV36/DV7*05|Homo sapiens|F|V-REGION|615075..615351|277 nt|1| | | | |277+0=277| | | 35 | 4451 277 0 36 | 0 AE000661|TRAV38-2/DV8*01|Homo sapiens|F|V-REGION|34309..34597|289 nt|1| | | | |289+0=289| | | 37 | 4728 289 0 38 | 0 M22198|TRDV1*01|Homo sapiens|F|V-REGION|363..649|287 nt|1| | | | |287+0=287| | | 39 | 5017 287 0 40 | 0 X15207|TRDV2*01|Homo sapiens|F|V-REGION|208..495|288 nt|1| | | | |288+0=288| | | 41 | 5304 288 0 42 | 0 Y13426|TRDV2*02|Homo sapiens|F|V-REGION|1..283|283 nt|1| | || |283+0=283|partial in 5' and in 3' | | 43 | 5592 283 0 44 | 0 AE000661|TRDV2*03|Homo sapiens|F|V-REGION|176712..176999|288 nt|1| | | | |288+0=288| | | 45 | 5875 288 0 46 | 0 M23326|TRDV3*01|Homo sapiens|F|V-REGION|303..592|290 nt|1| | || |290+0=290| | | 47 | 6163 290 0 48 | 0 X15261|TRDV3*02|Homo sapiens|F|V-REGION|316..605|290 nt|1| | || |290+0=290| | | 49 | 6453 290 0 50 | -------------------------------------------------------------------------------- /resource/TR/hs/TRDV.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRDV.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRDV.fa.fai: -------------------------------------------------------------------------------- 1 | M21626|TRAV14/DV4*01|Homo 290 87 60 61 2 | AE000659|TRAV14/DV4*02|Homo 290 477 60 61 3 | M21624|TRAV14/DV4*03|Homo 282 861 60 61 4 | L09758|TRAV14/DV4*04|Homo 271 1257 60 61 5 | AE000660|TRAV23/DV6*01|Homo 280 1625 60 61 6 | M17660|TRAV23/DV6*02|Homo 280 1997 60 61 7 | M97704|TRAV23/DV6*03|Homo 280 2370 60 61 8 | Y10411|TRAV23/DV6*04|Homo 267 2765 60 61 9 | IMGT000024|TRAV23/DV6*05|Homo 280 3134 60 61 10 | AE000660|TRAV29/DV5*01|Homo 280 3514 60 61 11 | S81645|TRAV29/DV5*02|Homo 279 3886 60 61 12 | IMGT000024|TRAV29/DV5*04|Homo 280 4267 60 61 13 | AE000660|TRAV36/DV7*01|Homo 277 4647 60 61 14 | X61070|TRAV36/DV7*02|Homo 274 5016 60 61 15 | X58767|TRAV36/DV7*03|Homo 270 5395 60 61 16 | Z46643|TRAV36/DV7*04|Homo 271 5758 60 61 17 | IMGT000024|TRAV36/DV7*05|Homo 277 6131 60 61 18 | AE000661|TRAV38-2/DV8*01|Homo 289 6508 60 61 19 | M22198|TRDV1*01|Homo 287 6884 60 61 20 | X15207|TRDV2*01|Homo 288 7258 60 61 21 | Y13426|TRDV2*02|Homo 283 7653 60 61 22 | AE000661|TRDV2*03|Homo 288 8031 60 61 23 | M23326|TRDV3*01|Homo 290 8405 60 61 24 | X15261|TRDV3*02|Homo 290 8781 60 61 25 | -------------------------------------------------------------------------------- /resource/TR/hs/TRDV.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRDV.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRDV.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRDV.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRGJ.fa: -------------------------------------------------------------------------------- 1 | >M12960|TRGJ1*01|Homo sapiens|F|J-REGION|157..206|50 nt|2| | | | |50+0=50| | | 2 | gaattattataagaaactctttggcagtggaacaacactggttgtcacag 3 | >IMGT000011|TRGJ1*02|Homo sapiens|F|J-REGION|118516..118565|50 nt|2| | || |50+0=50| | | 4 | gaattattataagaaactctttggcagtggaacaacacttgttgtcacag 5 | >M12961|TRGJ2*01|Homo sapiens|F|J-REGION|157..206|50 nt|2| | | | |50+0=50| | | 6 | gaattattataagaaactctttggcagtggaacaacacttgttgtcacag 7 | >M12950|TRGJP*01|Homo sapiens|F|J-REGION|29..90|62 nt|2| | | | |62+0=62| | | 8 | tgggcaagagttgggcaaaaaaatcaaggtatttggtcccggaacaaagcttatcattac 9 | ag 10 | >X08084|TRGJP1*01|Homo sapiens|F|J-REGION|29..88|60 nt|3| | | | |60+0=60| | | 11 | ataccactggttggttcaagatatttgctgaagggactaagctcatagtaacttcacctg 12 | >M16016|TRGJP2*01|Homo sapiens|F|J-REGION|29..88|60 nt|3| | | | |60+0=60| | | 13 | atagtagtgattggatcaagacgtttgcaaaagggactaggctcatagtaacttcgcctg -------------------------------------------------------------------------------- /resource/TR/hs/TRGJ.fa.amb: -------------------------------------------------------------------------------- 1 | 332 6 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRGJ.fa.ann: -------------------------------------------------------------------------------- 1 | 332 6 11 2 | 0 M12960|TRGJ1*01|Homo sapiens|F|J-REGION|157..206|50 nt|2| | | | |50+0=50| | | 3 | 0 50 0 4 | 0 IMGT000011|TRGJ1*02|Homo sapiens|F|J-REGION|118516..118565|50 nt|2| | || |50+0=50| | | 5 | 50 50 0 6 | 0 M12961|TRGJ2*01|Homo sapiens|F|J-REGION|157..206|50 nt|2| | | | |50+0=50| | | 7 | 100 50 0 8 | 0 M12950|TRGJP*01|Homo sapiens|F|J-REGION|29..90|62 nt|2| | | | |62+0=62| | | 9 | 150 62 0 10 | 0 X08084|TRGJP1*01|Homo sapiens|F|J-REGION|29..88|60 nt|3| | | | |60+0=60| | | 11 | 212 60 0 12 | 0 M16016|TRGJP2*01|Homo sapiens|F|J-REGION|29..88|60 nt|3| | | | |60+0=60| | | 13 | 272 60 0 14 | -------------------------------------------------------------------------------- /resource/TR/hs/TRGJ.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRGJ.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRGJ.fa.fai: -------------------------------------------------------------------------------- 1 | M12960|TRGJ1*01|Homo 50 79 50 51 2 | IMGT000011|TRGJ1*02|Homo 50 218 50 51 3 | M12961|TRGJ2*01|Homo 50 348 50 51 4 | M12950|TRGJP*01|Homo 62 476 60 61 5 | X08084|TRGJP1*01|Homo 60 618 60 61 6 | M16016|TRGJP2*01|Homo 60 757 60 61 7 | -------------------------------------------------------------------------------- /resource/TR/hs/TRGJ.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRGJ.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRGJ.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRGJ.fa.sa -------------------------------------------------------------------------------- /resource/TR/hs/TRGV.fa: -------------------------------------------------------------------------------- 1 | >M12949|TRGV1*01|Homo sapiens|ORF|V-REGION|174..470|297 nt|1| | | | |297+0=297| | | 2 | tcttccaacttggaagggagaacgaagtcagtcaccaggctgactgggtcatctgctgaa 3 | atcacctgtgatcttcctggagcaagtaccttatacatccactggtacctgcaccaggag 4 | gggaaggccccacagtgtcttctgtactatgaaccctactactccagggttgtgctggaa 5 | tcaggaatcactccaggaaagtatgacactggaagcacaaggagcaattggaatttgaga 6 | ctgcaaaatctaattaaaaatgattctgggttctattactgtgccacctgggacagg 7 | >X07206|TRGV10*01|Homo sapiens|ORF|V-REGION|164..474|311 nt|1| | | | |311+0=311| | | 8 | ttatcaaaagtggagcagttccagctatccatttccacggaagtcaagaaaagtattgac 9 | ataccttgcaagatatcgagcacaaggtttgaaacagatgtcattcactggtaccggcag 10 | aaaccaaatcaggctttggagcacctgatctatattgtctcaacaaaatccgcagctcga 11 | cgcagcatgggtaagacaagcaacaaagtggaggcaagaaagaattctcaaactctcact 12 | tcaatccttaccatcaagtccgtagagaaagaagacatggccgtttactactgtgctgcg 13 | tggtgggtggc 14 | >X74798|TRGV10*02|Homo sapiens|ORF|V-REGION|164..472|309 nt|1| | || |309+0=309| | | 15 | ttatcaaaagtggagcagttccagctatccatttccacggaagtcaagaaaagtattgac 16 | ataccttgcaagatatcgagcacaaggtttgaaacagatgtcattcactggtaccggcag 17 | aaaccaaatcaggctttggagcacctgatctatattgtctcaacaaaatccgcagctcga 18 | cgcagcatgggtaagacaagcaacaaagtggaggcaagaaagaattctcaaactctcact 19 | tcaatccttaccatcaagtccgtagagaaagaagacatggccgtttactactgtgctgcg 20 | tgggattac 21 | >Y11227|TRGV11*01|Homo sapiens|ORF|V-REGION|155..463|309 nt|1| | | | |309+0=309| | | 22 | cttgggcagttggaacaacctgaaatatctatttccagaccagcaaataagagtgcccac 23 | atatcttggaaggcatccatccaaggctttagcagtaaaatcatacactggtactggcag 24 | aaaccaaacaaaggcttagaatatttattacatgtcttcttgacaatctctgctcaagat 25 | tgctcaggtgggaagactaagaaacttgaggtaagtaaaaatgctcacacttccacttcc 26 | actttgaaaataaagttcttagagaaagaagatgaggtggtgtaccactgtgcctgctgg 27 | attaggcac 28 | >AF159056|TRGV11*02|Homo sapiens|ORF|V-REGION|81990..82298|309 nt|1| | | | |309+0=309| | | 29 | cttgggcagttggaacaacctgaaatatctatttccagaccagcaaataagagtgcccac 30 | atatcttggaaggcatccatccaaggctttagcagtaaaatcatacactggtactggcag 31 | aaaccaaacaaaggcttagaatatttattacatgtcttcttgacaatctctgctcaagat 32 | tgctcaggtgggaagactaagaaacttgagataagtaaaaatgctcacacttccacttcc 33 | actttgaaaataaagttcttagagaaagaagatgaggtggtgtaccactgtgcctgctgg 34 | attaggcac 35 | >M13429|TRGV2*01|Homo sapiens|F|V-REGION|166..465|300 nt|1| | | | |300+0=300| | | 36 | tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa 37 | atcacttgtgatcttgctgaaggaagtaacggctacatccactggtacctacaccaggag 38 | gggaaggccccacagcgtcttcagtactatgactcctacaactccaaggttgtgttggaa 39 | tcaggagtcagtccagggaagtattatacttacgcaagcacaaggaacaacttgagattg 40 | atactgcgaaatctaattgaaaatgactctggggtctattactgtgccacctgggacggg 41 | >M27337|TRGV2*02|Homo sapiens|(F)|V-REGION|44..340|297 nt|1| | | | |297+0=297| | | 42 | tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa 43 | atcacttgtgatcttgctgaaggaagtaacggctacatccactggtacctacaccaggag 44 | gggaaggccccacagcgtcttcagtactatgactcctacaactccaaggttgtgttggaa 45 | tcaggagtcagtccagggaagtattatacttacgcaagcacaaggaacaacttgagattg 46 | atactgcaaaatctaattgaaaatgactctggggtctattactgtgccacctgggac 47 | >IMGT000011|TRGV2*03|Homo sapiens|F|V-REGION|24893..25192|300 nt|1| | | | |300+0=300| | | 48 | tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa 49 | atcacttgtgatcttgctgaaggaagtaacggctacatccactggtacctacaccaggag 50 | gggaaggccccacagcgtcttcagtactatgactcctacaactccaaggttgtgttggaa 51 | tcaggagtcagtccagggaagtattatacttacgcaagcacaaggaacaacttgagattg 52 | atactgcgaaatctaattgaaaatgactttggggtctattactgtgccacctgggacggg 53 | >M13430|TRGV3*01|Homo sapiens|F|V-REGION|169..468|300 nt|1| | | | |300+0=300| | | 54 | tcttccaacttggaagggagaacgaagtcagtcaccaggcagactgggtcatctgctgaa 55 | atcacttgcgatcttactgtaacaaataccttctacatccactggtacctacaccaggag 56 | gggaaggccccacagcgtcttctgtactatgacgtctccaccgcaagggatgtgttggaa 57 | tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg 58 | agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctgggacagg 59 | >X04038|TRGV3*02|Homo sapiens|F|V-REGION|339..637|299 nt|1| | | | |299+0=299| | | 60 | tcttccaacttggaagggagaacgaagtcagtcaccaggcagactgggtcatctgctgaa 61 | atcacttgcgatcttactgtaacaaataccttctacatccactggtacctacaccaggag 62 | gggaaggccccacagcgtcttctgtactatgacgtctccactgcaagggatgtgttggaa 63 | tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg 64 | agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctgggacag 65 | >X15272|TRGV4*01|Homo sapiens|F|V-REGION|406..705|300 nt|1| | | | |300+0=300| | | 66 | tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa 67 | atcacttgtgatcttgctgaaggaagtaccggctacatccactggtacctacaccaggag 68 | gggaaggccccacagcgtcttctgtactatgactcctacacctccagcgttgtgttggaa 69 | tcaggaatcagcccagggaagtatgatacttatggaagcacaaggaagaacttgagaatg 70 | atactgcgaaatcttattgaaaatgactctggagtctattactgtgccacctgggatggg 71 | >X13354|TRGV4*02|Homo sapiens|F|V-REGION|170..469|300 nt|1| | | | |300+0=300| | | 72 | tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa 73 | atcacttgtgatcttgctgaaggaagtaccggctacatccactggtacctacaccaggag 74 | gggaaggccccacagcgtcttctgtactatgactcctacacctccagcgttgtgttggaa 75 | tcaggaatcagcccagggaagtatgatacttacggaagcacaaggaagaacttgagaatg 76 | atactgcgaaatcttattgaaaatgactctggagtctattactgtgccacctgggatggg 77 | >X13355|TRGV5*01|Homo sapiens|F|V-REGION|171..470|300 nt|1| | | | |300+0=300| | | 78 | tcttccaacttggaagggggaacgaagtcagtcacgaggccgactaggtcatctgctgaa 79 | atcacttgtgaccttactgtaataaatgccttctacatccactggtacctacaccaggag 80 | gggaaggccccacagcgtcttctgtactatgacgtctccaactcaaaggatgtgttggaa 81 | tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg 82 | atactacgaaatctaattgaaaatgattctggggtctattactgtgccacctgggacagg 83 | >M13431|TRGV5P*01|Homo sapiens|P|V-REGION|171..470|300 nt|1| | | | |300+0=300| | | 84 | tcttccaacttggaagggagaatgaagtcagtcaccaggccgactgggtcatctgctgaa 85 | atcacttgtgaccttactgtaataaatgccgtctacatccactggtacctacagcaggag 86 | gggaagaccccacagcatcttctgcactatgaagtctccaactcaagggatgtgttggaa 87 | tcaggtctcagtcttggaaagtattatactcatacaccgaggaggtggagctggaatttg 88 | agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctggggcagg 89 | >AF159056|TRGV5P*02|Homo sapiens|P|V-REGION|28623..28922|300 nt|1| | | | |300+0=300| | | 90 | tcttccaacttggaagggagaatgaagtcagtcaccaggccgactgggtcatctgctgaa 91 | atcacttgtgaccttactgtaataaatgccgtctacatccactggtacctacagcaggag 92 | gggaagaccccacagcatcttctgcactatgatgtctccaactcaagggatgtgttggaa 93 | tcaggtctcagtcttggaaagtattatactcatacaccgaggaggtggagctggaatttg 94 | agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctggggcagg 95 | >M13434|TRGV8*01|Homo sapiens|F|V-REGION|180..479|300 nt|1| | | | |300+0=300| | | 96 | tcttccaacttggaagggagaacaaagtcagtcaccaggccaactgggtcatcagctgta 97 | atcacttgtgatcttcctgtagaaaatgccgtctacacccactggtacctacaccaggag 98 | gggaaggccccacagcgtcttctgtactatgactcctacaactccagggttgtgttggaa 99 | tcaggaatcagtcgagaaaagtatcatacttatgcaagcacagggaagagccttaaattt 100 | atactggaaaatctaattgaacgtgactctggggtctattactgtgccacctgggatagg 101 | >X07205|TRGV9*01|Homo sapiens|F|V-REGION|178..483|306 nt|1| | | | |306+0=306| | | 102 | gcaggtcacctagagcaacctcaaatttccagtactaaaacgctgtcaaaaacagcccgc 103 | ctggaatgtgtggtgtctggaataacaatttctgcaacatctgtatattggtatcgagag 104 | agacctggtgaagtcatacagttcctggtgtccatttcatatgacggcactgtcagaaag 105 | gaatccggcattccgtcaggcaaatttgaggtggataggatacctgaaacgtctacatcc 106 | actctcaccattcacaatgtagagaaacaggacatagctacctactactgtgccttgtgg 107 | gaggtg 108 | >X15274|TRGV9*02|Homo sapiens|F|V-REGION|827..1132|306 nt|1| | | | |306+0=306| | | 109 | gcaggtcacctagagcaacctcaaatttccagtactaaaacgctgtcaaaaacagcccgc 110 | ctggaatgtgtggtgtctggaataaaaatttctgcaacatctgtatattggtatcgagag 111 | agacctggtgaagtcatacagttcctggtgtccatttcatatgacggcactgtcagaaag 112 | gaatctggcattccgtcaggcaaatttgaggtggataggatacctgaaacgtctacatcc 113 | actctcaccattcacaatgtagagaaacaggacatagctacctactactgtgccttgtgg 114 | gaggtg 115 | >X07208|TRGVA*01|Homo sapiens|P|V-REGION|134..418|285 nt|1| | | | |285+0=285| | | 116 | ctcatcaggccggagcagctggcccatgtcctggggcactagggaagcttggtcatcctg 117 | cagtgcgtggtccgcaccaggatcagctacacccactggtaccagcagaagggccaggtc 118 | cctgaggcactccaccagctggccatgtccaagttggatgtgcagtgggattccatcctg 119 | aaagcagataaaatcatagccaaggatggcagcagctctatcttggcagtactgaagttg 120 | gagacaggcatcgagggcatgaactactgcacaacctgggccctg -------------------------------------------------------------------------------- /resource/TR/hs/TRGV.fa.amb: -------------------------------------------------------------------------------- 1 | 5728 19 0 2 | -------------------------------------------------------------------------------- /resource/TR/hs/TRGV.fa.ann: -------------------------------------------------------------------------------- 1 | 5728 19 11 2 | 0 M12949|TRGV1*01|Homo sapiens|ORF|V-REGION|174..470|297 nt|1| | | | |297+0=297| | | 3 | 0 297 0 4 | 0 X07206|TRGV10*01|Homo sapiens|ORF|V-REGION|164..474|311 nt|1| | | | |311+0=311| | | 5 | 297 311 0 6 | 0 X74798|TRGV10*02|Homo sapiens|ORF|V-REGION|164..472|309 nt|1| | || |309+0=309| | | 7 | 608 309 0 8 | 0 Y11227|TRGV11*01|Homo sapiens|ORF|V-REGION|155..463|309 nt|1| | | | |309+0=309| | | 9 | 917 309 0 10 | 0 AF159056|TRGV11*02|Homo sapiens|ORF|V-REGION|81990..82298|309 nt|1| | | | |309+0=309| | | 11 | 1226 309 0 12 | 0 M13429|TRGV2*01|Homo sapiens|F|V-REGION|166..465|300 nt|1| | | | |300+0=300| | | 13 | 1535 300 0 14 | 0 M27337|TRGV2*02|Homo sapiens|(F)|V-REGION|44..340|297 nt|1| | | | |297+0=297| | | 15 | 1835 297 0 16 | 0 IMGT000011|TRGV2*03|Homo sapiens|F|V-REGION|24893..25192|300 nt|1| | | | |300+0=300| | | 17 | 2132 300 0 18 | 0 M13430|TRGV3*01|Homo sapiens|F|V-REGION|169..468|300 nt|1| | | | |300+0=300| | | 19 | 2432 300 0 20 | 0 X04038|TRGV3*02|Homo sapiens|F|V-REGION|339..637|299 nt|1| | | | |299+0=299| | | 21 | 2732 299 0 22 | 0 X15272|TRGV4*01|Homo sapiens|F|V-REGION|406..705|300 nt|1| | | | |300+0=300| | | 23 | 3031 300 0 24 | 0 X13354|TRGV4*02|Homo sapiens|F|V-REGION|170..469|300 nt|1| | | | |300+0=300| | | 25 | 3331 300 0 26 | 0 X13355|TRGV5*01|Homo sapiens|F|V-REGION|171..470|300 nt|1| | | | |300+0=300| | | 27 | 3631 300 0 28 | 0 M13431|TRGV5P*01|Homo sapiens|P|V-REGION|171..470|300 nt|1| | | | |300+0=300| | | 29 | 3931 300 0 30 | 0 AF159056|TRGV5P*02|Homo sapiens|P|V-REGION|28623..28922|300 nt|1| | | | |300+0=300| | | 31 | 4231 300 0 32 | 0 M13434|TRGV8*01|Homo sapiens|F|V-REGION|180..479|300 nt|1| | | | |300+0=300| | | 33 | 4531 300 0 34 | 0 X07205|TRGV9*01|Homo sapiens|F|V-REGION|178..483|306 nt|1| | | | |306+0=306| | | 35 | 4831 306 0 36 | 0 X15274|TRGV9*02|Homo sapiens|F|V-REGION|827..1132|306 nt|1| | | | |306+0=306| | | 37 | 5137 306 0 38 | 0 X07208|TRGVA*01|Homo sapiens|P|V-REGION|134..418|285 nt|1| | | | |285+0=285| | | 39 | 5443 285 0 40 | -------------------------------------------------------------------------------- /resource/TR/hs/TRGV.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRGV.fa.bwt -------------------------------------------------------------------------------- /resource/TR/hs/TRGV.fa.fai: -------------------------------------------------------------------------------- 1 | M12949|TRGV1*01|Homo 297 84 60 61 2 | X07206|TRGV10*01|Homo 311 471 60 61 3 | X74798|TRGV10*02|Homo 309 872 60 61 4 | Y11227|TRGV11*01|Homo 309 1272 60 61 5 | AF159056|TRGV11*02|Homo 309 1678 60 61 6 | M13429|TRGV2*01|Homo 300 2075 60 61 7 | M27337|TRGV2*02|Homo 297 2463 60 61 8 | IMGT000011|TRGV2*03|Homo 300 2855 60 61 9 | M13430|TRGV3*01|Homo 300 3242 60 61 10 | X04038|TRGV3*02|Homo 299 3629 60 61 11 | X15272|TRGV4*01|Homo 300 4015 60 61 12 | X13354|TRGV4*02|Homo 300 4402 60 61 13 | X13355|TRGV5*01|Homo 300 4789 60 61 14 | M13431|TRGV5P*01|Homo 300 5177 60 61 15 | AF159056|TRGV5P*02|Homo 300 5571 60 61 16 | M13434|TRGV8*01|Homo 300 5958 60 61 17 | X07205|TRGV9*01|Homo 306 6345 60 61 18 | X15274|TRGV9*02|Homo 306 6740 60 61 19 | X07208|TRGVA*01|Homo 285 7134 60 61 20 | -------------------------------------------------------------------------------- /resource/TR/hs/TRGV.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRGV.fa.pac -------------------------------------------------------------------------------- /resource/TR/hs/TRGV.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/hs/TRGV.fa.sa -------------------------------------------------------------------------------- /resource/TR/ms/TRBJ-CDR3.fa: -------------------------------------------------------------------------------- 1 | >X01018|TRBJ1-1*01|Mus musculus_B10.A|F|J-REGION|73..120|48 nt|3| | | | |48+0=48| | | 2 | gtcttctttggtaaaggaaccagactcacagttgta 3 | >M11456|TRBJ1-1*02|Mus musculus_BALB/cxC56BL/6(F1)|(F)|J-REGION|371..418,g|48 nt|3| |1| | |48+0=48| | | 4 | gtcttctttggtaaaggaaccacactcacagttgta 5 | >X01018|TRBJ1-2*01|Mus musculus_B10.A|F|J-REGION|209..256|48 nt|3| | | | |48+0=48| | | 6 | tacaccttcggctcagggaccaggcttttggtaata 7 | >X01018|TRBJ1-3*01|Mus musculus_B10.A|F|J-REGION|549..598|50 nt|2| | | | |50+0=50| | | 8 | acgctctattttggagaaggaagccggctcattgttgta 9 | >X01018|TRBJ1-4*01|Mus musculus_B10.A|F|J-REGION|1036..1086|51 nt|3| | | | |51+0=51| | | 10 | agattatttttcggtcatggaaccaagctgtctgtcttg 11 | >AE000665|TRBJ1-4*02|Mus musculus_BALB/c|F|J-REGION|154903..154953|51 nt|3| | | | |51+0=51| | | 12 | agattatttttcggtcatggaaccaagctgtctgtcctg 13 | >AE000665|TRBJ1-5*01|Mus musculus_BALB/c|F|J-REGION|155176..155225|50 nt|2| | | | |50+0=50| | | 14 | gctccgctttttggagaggggactcgactctctgttcta 15 | >X01018|TRBJ1-5*02|Mus musculus_B10.A|F|J-REGION|1309..1357|49 nt|1| | | | |49+0=49| | | 16 | gctccgctttttggagaggggactcgactctctgttcta 17 | >U77843|TRBJ1-5*03|Mus musculus_SJL/J|F|J-REGION|1882..1931|50 nt|2| | | | |50+0=50| | | 18 | gctcagcattttggagaggggactcgactctctgttcta 19 | >X01018|TRBJ1-7*01|Mus musculus_B10.A|ORF|J-REGION|1867..1912|46 nt|1| | | | |46+0=46| | | 20 | gatgaccatggtcttggaaaggaacttaggtataag 21 | >K02802|TRBJ2-1*01|Mus musculus_B10.A|F|J-REGION|405..454|50 nt|2| | | | |50+0=50| | | 22 | gagcagttcttcggaccagggacacgactcaccgtccta 23 | >K02802|TRBJ2-2*01|Mus musculus_B10.A|F|J-REGION|608..658|51 nt|3| | | | |51+0=51| | | 24 | cagctctactttggtgaaggctcaaagctgacagtgctg 25 | >K02802|TRBJ2-3*01|Mus musculus_B10.A|F|J-REGION|874..922|49 nt|1| | | | |49+0=49| | | 26 | acgctgtattttggctcaggaaccagactgactgttctc 27 | >K02802|TRBJ2-4*01|Mus musculus_B10.A|F|J-REGION|1013..1061|49 nt|1| | | | |49+0=49| | | 28 | accttgtactttggtgcgggcacccgactatcggtgcta 29 | >K02802|TRBJ2-5*01|Mus musculus_B10.A|F|J-REGION|1104..1152|49 nt|1| | | | |49+0=49| | | 30 | acccagtactttgggccaggcactcggctcctcgtgtta 31 | >K02802|TRBJ2-7*01|Mus musculus_B10.A|F|J-REGION|1460..1506|47 nt|2| | | | |47+0=47| | | 32 | cagtacttcggtcccggcaccaggctcacggtttta 33 | >M16122|TRBJ2-7*02|Mus musculus_C57BL/6|(F)|J-REGION|573..619,g|47 nt|2| |1| | |47+0=47| | | 34 | cagtacttcggtcccggcactaggctcacggtttta 35 | >IMGT000023|TRBJ1-1*01|Mustela putorius furo_sable|ORF|J-REGION|201954..202001|48 nt|3| | | | |48+0=48| | | 36 | cttttctttggagaaggcaccaggctcacagttata 37 | >IMGT000023|TRBJ1-2*01|Mustela putorius furo_sable|F|J-REGION|202089..202132|44 nt|2| | | | |44+0=44| | | 38 | accttcggcccagggaccaagctgacggttgtc 39 | >IMGT000023|TRBJ1-3*01|Mustela putorius furo_sable|P|J-REGION|202736..202785|50 nt|2| | | | |50+0=50| | | 40 | accctccattttggggaggggacccggctcactgttgta 41 | >IMGT000023|TRBJ1-5*01|Mustela putorius furo_sable|F|J-REGION|203575..203624|50 nt|2| | | | |50+0=50| | | 42 | gcccagcactttggagatggtactcaactcttggtcctc 43 | >IMGT000023|TRBJ1-6*01|Mustela putorius furo_sable|F|J-REGION|204045..204097|53 nt|2| | | | |53+0=53| | | 44 | tcgccgctctactttgggatgggcaccaggctcaccgtg 45 | >IMGT000023|TRBJ2-1*01|Mustela putorius furo_sable|ORF|J-REGION|211338..211387|50 nt|2| | | | |50+0=50| | | 46 | gagcagcactttgggccagggacccggctcacagtacta 47 | >IMGT000023|TRBJ2-2*01|Mustela putorius furo_sable|F|J-REGION|211534..211584|51 nt|3| | | | |51+0=51| | | 48 | cagctgtactttggggccggttccaagctgacggttctg 49 | >IMGT000023|TRBJ2-3*01|Mustela putorius furo_sable|F|J-REGION|211775..211823|49 nt|1| | | | |49+0=49| | | 50 | actcagtatttcggcaggggcacccggctgacggtgcta 51 | >IMGT000023|TRBJ2-4*01|Mustela putorius furo_sable|F|J-REGION|211910..211958|49 nt|1| | | | |49+0=49| | | 52 | acccagtacttcggcgcggggacccggctgacggttcta 53 | >IMGT000023|TRBJ2-5*01|Mustela putorius furo_sable|ORF|J-REGION|212015..212067|53 nt|2| | | | |53+0=53| | | 54 | tctgccctgtccttcggggccggcagccggctgaccgtc 55 | >IMGT000023|TRBJ2-6*01|Mustela putorius furo_sable|F|J-REGION|212245..212291|47 nt|2| | | | |47+0=47| | | 56 | cagtatttcggctccggcaccaggctcacggtcata 57 | -------------------------------------------------------------------------------- /resource/TR/ms/TRBJ-CDR3.fa.amb: -------------------------------------------------------------------------------- 1 | 1062 28 0 2 | -------------------------------------------------------------------------------- /resource/TR/ms/TRBJ-CDR3.fa.ann: -------------------------------------------------------------------------------- 1 | 1062 28 11 2 | 0 X01018|TRBJ1-1*01|Mus musculus_B10.A|F|J-REGION|73..120|48 nt|3| | | | |48+0=48| | | 3 | 0 36 0 4 | 0 M11456|TRBJ1-1*02|Mus musculus_BALB/cxC56BL/6(F1)|(F)|J-REGION|371..418,g|48 nt|3| |1| | |48+0=48| | | 5 | 36 36 0 6 | 0 X01018|TRBJ1-2*01|Mus musculus_B10.A|F|J-REGION|209..256|48 nt|3| | | | |48+0=48| | | 7 | 72 36 0 8 | 0 X01018|TRBJ1-3*01|Mus musculus_B10.A|F|J-REGION|549..598|50 nt|2| | | | |50+0=50| | | 9 | 108 39 0 10 | 0 X01018|TRBJ1-4*01|Mus musculus_B10.A|F|J-REGION|1036..1086|51 nt|3| | | | |51+0=51| | | 11 | 147 39 0 12 | 0 AE000665|TRBJ1-4*02|Mus musculus_BALB/c|F|J-REGION|154903..154953|51 nt|3| | | | |51+0=51| | | 13 | 186 39 0 14 | 0 AE000665|TRBJ1-5*01|Mus musculus_BALB/c|F|J-REGION|155176..155225|50 nt|2| | | | |50+0=50| | | 15 | 225 39 0 16 | 0 X01018|TRBJ1-5*02|Mus musculus_B10.A|F|J-REGION|1309..1357|49 nt|1| | | | |49+0=49| | | 17 | 264 39 0 18 | 0 U77843|TRBJ1-5*03|Mus musculus_SJL/J|F|J-REGION|1882..1931|50 nt|2| | | | |50+0=50| | | 19 | 303 39 0 20 | 0 X01018|TRBJ1-7*01|Mus musculus_B10.A|ORF|J-REGION|1867..1912|46 nt|1| | | | |46+0=46| | | 21 | 342 36 0 22 | 0 K02802|TRBJ2-1*01|Mus musculus_B10.A|F|J-REGION|405..454|50 nt|2| | | | |50+0=50| | | 23 | 378 39 0 24 | 0 K02802|TRBJ2-2*01|Mus musculus_B10.A|F|J-REGION|608..658|51 nt|3| | | | |51+0=51| | | 25 | 417 39 0 26 | 0 K02802|TRBJ2-3*01|Mus musculus_B10.A|F|J-REGION|874..922|49 nt|1| | | | |49+0=49| | | 27 | 456 39 0 28 | 0 K02802|TRBJ2-4*01|Mus musculus_B10.A|F|J-REGION|1013..1061|49 nt|1| | | | |49+0=49| | | 29 | 495 39 0 30 | 0 K02802|TRBJ2-5*01|Mus musculus_B10.A|F|J-REGION|1104..1152|49 nt|1| | | | |49+0=49| | | 31 | 534 39 0 32 | 0 K02802|TRBJ2-7*01|Mus musculus_B10.A|F|J-REGION|1460..1506|47 nt|2| | | | |47+0=47| | | 33 | 573 36 0 34 | 0 M16122|TRBJ2-7*02|Mus musculus_C57BL/6|(F)|J-REGION|573..619,g|47 nt|2| |1| | |47+0=47| | | 35 | 609 36 0 36 | 0 IMGT000023|TRBJ1-1*01|Mustela putorius furo_sable|ORF|J-REGION|201954..202001|48 nt|3| | | | |48+0=48| | | 37 | 645 36 0 38 | 0 IMGT000023|TRBJ1-2*01|Mustela putorius furo_sable|F|J-REGION|202089..202132|44 nt|2| | | | |44+0=44| | | 39 | 681 33 0 40 | 0 IMGT000023|TRBJ1-3*01|Mustela putorius furo_sable|P|J-REGION|202736..202785|50 nt|2| | | | |50+0=50| | | 41 | 714 39 0 42 | 0 IMGT000023|TRBJ1-5*01|Mustela putorius furo_sable|F|J-REGION|203575..203624|50 nt|2| | | | |50+0=50| | | 43 | 753 39 0 44 | 0 IMGT000023|TRBJ1-6*01|Mustela putorius furo_sable|F|J-REGION|204045..204097|53 nt|2| | | | |53+0=53| | | 45 | 792 39 0 46 | 0 IMGT000023|TRBJ2-1*01|Mustela putorius furo_sable|ORF|J-REGION|211338..211387|50 nt|2| | | | |50+0=50| | | 47 | 831 39 0 48 | 0 IMGT000023|TRBJ2-2*01|Mustela putorius furo_sable|F|J-REGION|211534..211584|51 nt|3| | | | |51+0=51| | | 49 | 870 39 0 50 | 0 IMGT000023|TRBJ2-3*01|Mustela putorius furo_sable|F|J-REGION|211775..211823|49 nt|1| | | | |49+0=49| | | 51 | 909 39 0 52 | 0 IMGT000023|TRBJ2-4*01|Mustela putorius furo_sable|F|J-REGION|211910..211958|49 nt|1| | | | |49+0=49| | | 53 | 948 39 0 54 | 0 IMGT000023|TRBJ2-5*01|Mustela putorius furo_sable|ORF|J-REGION|212015..212067|53 nt|2| | | | |53+0=53| | | 55 | 987 39 0 56 | 0 IMGT000023|TRBJ2-6*01|Mustela putorius furo_sable|F|J-REGION|212245..212291|47 nt|2| | | | |47+0=47| | | 57 | 1026 36 0 58 | -------------------------------------------------------------------------------- /resource/TR/ms/TRBJ-CDR3.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/ms/TRBJ-CDR3.fa.bwt -------------------------------------------------------------------------------- /resource/TR/ms/TRBJ-CDR3.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/ms/TRBJ-CDR3.fa.pac -------------------------------------------------------------------------------- /resource/TR/ms/TRBJ-CDR3.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/ms/TRBJ-CDR3.fa.sa -------------------------------------------------------------------------------- /resource/TR/ms/TRBV-CDR3.fa.amb: -------------------------------------------------------------------------------- 1 | 3060 68 0 2 | -------------------------------------------------------------------------------- /resource/TR/ms/TRBV-CDR3.fa.ann: -------------------------------------------------------------------------------- 1 | 3060 68 11 2 | 0 M15614|TRBV12-1*01|Mus musculus_C57BL/6|F|V-REGION|229..513|285 nt|1| | | | |285+0=285| | | 3 | 0 45 0 4 | 0 M30881|TRBV12-1*02|Mus musculus_NZW|(F)|V-REGION|109..390|282 nt|1| | | | |282+0=282| | | 5 | 45 45 0 6 | 0 M15613|TRBV12-2*01|Mus musculus_C57BL/6|F|V-REGION|235..519|285 nt|1| | | | |285+0=285| | | 7 | 90 45 0 8 | 0 X02782|TRBV12-2*02|Mus musculus_BALB/c|(F)|V-REGION|3..284|282 nt|1| | | | |282+0=282| | | 9 | 135 45 0 10 | 0 M15618|TRBV13-1*01|Mus musculus_C57BL/6|F|V-REGION|158..443|286 nt|1| | | | |286+0=286| | | 11 | 180 45 0 12 | 0 AE000663|TRBV13-1*02|Mus musculus_BALB/c|F|V-REGION|238421..238706|286 nt|1| | | | |286+0=286| | | 13 | 225 45 0 14 | 0 M15617|TRBV13-2*01|Mus musculus_C57BL/6|F|V-REGION|160..445|286 nt|1| | | | |286+0=286| | | 15 | 270 45 0 16 | 0 M27350|TRBV13-2*02|Mus musculus_BALB/cnu/nu|(F)|V-REGION|1..274|274 nt|1| | || |274+0=274|partial in 5'| | 17 | 315 45 0 18 | 0 M26417|TRBV13-2*03|Mus musculus_CBA/J|(F)|V-REGION|61..342|282 nt|1| | | | |282+0=282| | | 19 | 360 45 0 20 | 0 AJ249823|TRBV13-2*04|Mus musculus_CI27|(F)|V-REGION|1..280|280 nt|1| | | | |280+0=280|partial in 5'| | 21 | 405 45 0 22 | 0 AJ250103|TRBV13-2*05|Mus musculus_ER34|(F)|V-REGION|1..279|279 nt|1| | | | |279+0=279| | | 23 | 450 45 0 24 | 0 M15616|TRBV13-3*01|Mus musculus_C57BL/6|F|V-REGION|164..449|286 nt|1| | | | |286+0=286| | | 25 | 495 45 0 26 | 0 AE000664|TRBV14*01|Mus musculus_BALB/c|F|V-REGION|7006..7294|289 nt|1| | | | |289+0=289| | | 27 | 540 45 0 28 | 0 AE000664|TRBV15*01|Mus musculus_BALB/c|F|V-REGION|13044..13333|290 nt|1| | | | |290+0=290| | | 29 | 585 45 0 30 | 0 L29434|TRBV16*01|Mus musculus_C57BL/6|F|V-REGION|844..1133|290 nt|1| | | | |290+0=290| | | 31 | 630 45 0 32 | 0 M13670|TRBV16*02|Mus musculus_C57BL/6|(F)|V-REGION|97..381|285 nt|1| | | | |285+0=285| | | 33 | 675 45 0 34 | 0 M15459|TRBV16*03|Mus musculus_C57BL/6|(F)|V-REGION|109..393|285 nt|1| | | | |285+0=285| | | 35 | 720 45 0 36 | 0 X14388|TRBV16*04|Mus musculus_C57BL/6|(F)|V-REGION|58..343|286 nt|1| | || |286+0=286| | | 37 | 765 45 0 38 | 0 AE000664|TRBV17*01|Mus musculus_BALB/c|F|V-REGION|34935..35221|287 nt|1| | | | |287+0=287| | | 39 | 810 45 0 40 | 0 AE000664|TRBV19*01|Mus musculus_BALB/c|F|V-REGION|50425..50710|286 nt|1| | | | |286+0=286| | | 41 | 855 45 0 42 | 0 X01643|TRBV19*02|Mus musculus_C57BL/6|(F)|V-REGION|233..517|285 nt|1| | || |285+0=285| | | 43 | 900 45 0 44 | 0 AJ249821|TRBV19*03|Mus musculus_SWR/J|(F)|V-REGION|1..282|282 nt|1| | | | |282+0=282| | | 45 | 945 45 0 46 | 0 AE000663|TRBV2*01|Mus musculus_BALB/c|F|V-REGION|169947..170233|287 nt|1| | | | |287+0=287| | | 47 | 990 45 0 48 | 0 AE000664|TRBV20*01|Mus musculus_BALB/c|F|V-REGION|60348..60640|293 nt|1| | | | |293+0=293| | | 49 | 1035 45 0 50 | 0 X16691|TRBV21*01|Mus musculus_BALB/c|ORF|V-REGION|1..290|290 nt|1| | | | |290+0=290| | | 51 | 1080 45 0 52 | 0 AE000664|TRBV23*01|Mus musculus_BALB/c|F|V-REGION|87900..88192|290 nt|1| | | | |290+0=290| | | 53 | 1125 45 0 54 | 0 M61184|TRBV24*01|Mus musculus_PWK|F|V-REGION|178..467|290 nt|1| | | | |290+0=290| | | 55 | 1170 45 0 56 | 0 AE000664|TRBV24*02|Mus musculus_BALB/c|P|V-REGION|89934..90223|290 nt|1| | | | |290+0=290| | | 57 | 1215 45 0 58 | 0 M16203|TRBV24*03|Mus musculus_BALB/c|(ORF)|V-REGION|184..471|288 nt|1| | | | |288+0=288| | | 59 | 1260 45 0 60 | 0 L48997|TRBV24*04|Mus musculus_CzechII|(F)|V-REGION|58..345|288 nt|1| | | | |288+0=288| | | 61 | 1305 45 0 62 | 0 K02548|TRBV26*01|Mus musculus_B10.A|F|V-REGION|2..291|290 nt|1| | | | |290+0=290| | | 63 | 1350 45 0 64 | 0 AJ249822|TRBV26*02|Mus musculus_SWR/J|(F)|V-REGION|1..285|285 nt|1| | | | |285+0=285| | | 65 | 1395 45 0 66 | 0 AE000664|TRBV29*01|Mus musculus_BALB/c|F|V-REGION|143112..143398|287 nt|1| | | | |287+0=287| | | 67 | 1440 45 0 68 | 0 AE000663|TRBV3*01|Mus musculus_BALB/c|F|V-REGION|170773..171062|290 nt|1| | | | |290+0=290| | | 69 | 1485 45 0 70 | 0 X03865|TRBV3*02|Mus musculus_B10.A|(F)|V-REGION|154..442|289 nt|1| | || |289+0=289| | | 71 | 1530 45 0 72 | 0 X16695|TRBV30*01|Mus musculus_BALB/c|F|V-REGION|1..290|290 nt|1| | | | |290+0=290| | | 73 | 1575 45 0 74 | 0 X03277|TRBV31*01|Mus musculus_BALB/c|F|V-REGION|427..710|284 nt|1| | | | |284+0=284| | | 75 | 1620 45 0 76 | 0 X56725|TRBV4*01|Mus musculus_C57BL/6|F|V-REGION|174..460|287 nt|1| | | | |287+0=287| | | 77 | 1665 45 0 78 | 0 AJ249819|TRBV4*02|Mus musculus_SWR/J|(F)|V-REGION|1..282|282 nt|1| | | | |282+0=282| | | 79 | 1710 45 0 80 | 0 AE000663|TRBV5*01|Mus musculus_BALB/c|F|V-REGION|184762..185045|284 nt|1| | | | |284+0=284| | | 81 | 1755 45 0 82 | 0 X00438|TRBV5*02|Mus musculus_BALB/c|(F)|V-REGION|80..360|281 nt|1| | || |281+0=281| | | 83 | 1800 45 0 84 | 0 X02779|TRBV5*03|Mus musculus_AKR|(F)|V-REGION|58..338|281 nt|1| | || |281+0=281| | | 85 | 1845 45 0 86 | 0 M20878|TRBV5*04|Mus musculus_B10.S(9R)|(F)|V-REGION|7..288|282 nt|1| | | | |282+0=282| | | 87 | 1890 45 0 88 | 0 AJ249820|TRBV5*05|Mus musculus_SWR/J|(F)|V-REGION|1..279|279 nt|1| | | | |279+0=279| | | 89 | 1935 45 0 90 | 0 X16693|TRBV9*01|Mus musculus_BALB/c|P|V-REGION|1..290|290 nt|1| | | | |290+0=290| | | 91 | 1980 45 0 92 | 0 IMGT000023|TRBV12-1*01|Mustela putorius furo_sable|F|V-REGION|88390..88679|290 nt|1| | | | |290+0=290| | | 93 | 2025 45 0 94 | 0 IMGT000023|TRBV12-2*01|Mustela putorius furo_sable|F|V-REGION|96238..96527|290 nt|1| | | | |290+0=290| | | 95 | 2070 45 0 96 | 0 IMGT000023|TRBV15*01|Mustela putorius furo_sable|F|V-REGION|101924..102210|287 nt|1| | | | |287+0=287| | | 97 | 2115 45 0 98 | 0 IMGT000023|TRBV16*01|Mustela putorius furo_sable|F|V-REGION|107939..108228|290 nt|1| | | | |290+0=290| | | 99 | 2160 45 0 100 | 0 IMGT000023|TRBV18*01|Mustela putorius furo_sable|F|V-REGION|118847..119136|290 nt|1| | | | |290+0=290| | | 101 | 2205 45 0 102 | 0 IMGT000023|TRBV19*01|Mustela putorius furo_sable|F|V-REGION|122125..122411|287 nt|1| | | | |287+0=287| | | 103 | 2250 45 0 104 | 0 IMGT000023|TRBV21*01|Mustela putorius furo_sable|F|V-REGION|134984..135273|290 nt|1| | | | |290+0=290| | | 105 | 2295 45 0 106 | 0 IMGT000023|TRBV22*01|Mustela putorius furo_sable|F|V-REGION|139717..140002|286 nt|1| | | | |286+0=286| | | 107 | 2340 45 0 108 | 0 IMGT000023|TRBV24*01|Mustela putorius furo_sable|P|V-REGION|148553..148837|285 nt|1| | | | |285+0=285| | | 109 | 2385 45 0 110 | 0 IMGT000023|TRBV25*01|Mustela putorius furo_sable|F|V-REGION|154750..155036|287 nt|1| | | | |287+0=287| | | 111 | 2430 45 0 112 | 0 IMGT000023|TRBV26*01|Mustela putorius furo_sable|F|V-REGION|159766..160051|286 nt|1| | | | |286+0=286| | | 113 | 2475 45 0 114 | 0 IMGT000023|TRBV27*01|Mustela putorius furo_sable|F|V-REGION|168336..168622|287 nt|1| | | | |287+0=287| | | 115 | 2520 45 0 116 | 0 IMGT000023|TRBV28*01|Mustela putorius furo_sable|P|V-REGION|175794..176079|286 nt|1| | | | |286+0=286| | | 117 | 2565 45 0 118 | 0 IMGT000023|TRBV29*01|Mustela putorius furo_sable|F|V-REGION|182474..182763|290 nt|1| | | | |290+0=290| | | 119 | 2610 45 0 120 | 0 IMGT000023|TRBV3*01|Mustela putorius furo_sable|F|V-REGION|16915..17201|287 nt|1| | | | |287+0=287| | | 121 | 2655 45 0 122 | 0 IMGT000023|TRBV4-1*01|Mustela putorius furo_sable|F|V-REGION|10159..10445|287 nt|1| | | | |287+0=287| | | 123 | 2700 45 0 124 | 0 IMGT000023|TRBV4-2*01|Mustela putorius furo_sable|F|V-REGION|19505..19791|287 nt|1| | | | |287+0=287| | | 125 | 2745 45 0 126 | 0 IMGT000023|TRBV5-2*01|Mustela putorius furo_sable|F|V-REGION|37675..37959|285 nt|1| | | | |285+0=285| | | 127 | 2790 45 0 128 | 0 IMGT000023|TRBV5-4*01|Mustela putorius furo_sable|F|V-REGION|69157..69442|286 nt|1| | | | |286+0=286| | | 129 | 2835 45 0 130 | 0 IMGT000023|TRBV6*01|Mustela putorius furo_sable|ORF|V-REGION|43505..43797|293 nt|1| | | | |293+0=293| | | 131 | 2880 45 0 132 | 0 IMGT000023|TRBV7-1*01|Mustela putorius furo_sable|F|V-REGION|46918..47207|290 nt|1| | | | |290+0=290| | | 133 | 2925 45 0 134 | 0 IMGT000023|TRBV7-2*01|Mustela putorius furo_sable|F|V-REGION|62843..63132|290 nt|1| | | | |290+0=290| | | 135 | 2970 45 0 136 | 0 IMGT000023|TRBV8*01|Mustela putorius furo_sable|F|V-REGION|50162..50448|287 nt|1| | | | |287+0=287| | | 137 | 3015 45 0 138 | -------------------------------------------------------------------------------- /resource/TR/ms/TRBV-CDR3.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/ms/TRBV-CDR3.fa.bwt -------------------------------------------------------------------------------- /resource/TR/ms/TRBV-CDR3.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/ms/TRBV-CDR3.fa.pac -------------------------------------------------------------------------------- /resource/TR/ms/TRBV-CDR3.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/ms/TRBV-CDR3.fa.sa -------------------------------------------------------------------------------- /resource/TR/pig/TRBJ-CDR3-AA.fa: -------------------------------------------------------------------------------- 1 | >IMGT000039|TRBJ1-1*01|Sus scrofa_Duroc|F|J-REGION|356789..356836|48 nt|3| | | |15 AA|15+0=15| | | 2 | NTEVFFGGGTRLTVV 3 | >IMGT000039|TRBJ1-2*01|Sus scrofa_Duroc|F|J-REGION|356924..356967|44 nt|2| | | |14 AA|14+0=14| | | 4 | YDYNFGPGTKLTVV 5 | >IMGT000039|TRBJ1-3*01|Sus scrofa_Duroc|F|J-REGION|357205..357254|50 nt|2| | | |16 AA|16+0=16| | | 6 | FGDTCFFGEGSQLTVV 7 | >IMGT000039|TRBJ1-5*01|Sus scrofa_Duroc|F|J-REGION|357877..357927|51 nt|3| | | |16 AA|16+0=16| | | 8 | TNEKLIFGSGTKLSVL 9 | >IMGT000039|TRBJ1-6*01|Sus scrofa_Duroc|F|J-REGION|358119..358168|50 nt|2| | | |16 AA|16+0=16| | | 10 | SNQAQHFGDGTRVSVL 11 | >IMGT000039|TRBJ1-7*01|Sus scrofa_Duroc|F|J-REGION|358575..358627|53 nt|2| | | |17 AA|17+0=17| | | 12 | SYNSPLHFGLGTRLTVT 13 | >IMGT000039|TRBJ2-1*01|Sus scrofa_Duroc|F|J-REGION|377857..377906|50 nt|2| | ||16 AA|16+0=16| | | 14 | SYNDLHFGPGTRLTVL 15 | >IMGT000039|TRBJ2-2*01|Sus scrofa_Duroc|F|J-REGION|378057..378107|51 nt|3| | | |16 AA|16+0=16| | | 16 | NTGQLYFGDGSKLTVL 17 | >IMGT000039|TRBJ2-3*01|Sus scrofa_Duroc|F|J-REGION|378280..378327|48 nt|3| | | |15 AA|15+0=15| | | 18 | QNIQYFGPGTRLTVL 19 | >IMGT000039|TRBJ2-4*01|Sus scrofa_Duroc|F|J-REGION|378394..378441|48 nt|3| | | |15 AA|15+0=15| | | 20 | SQTQYFGPGTRLLVL 21 | >IMGT000039|TRBJ2-5*01|Sus scrofa_Duroc|F|J-REGION|378492..378544|53 nt|2| | | |17 AA|17+0=17| | | 22 | LTGATLTFGAGSRLTVV 23 | >IMGT000039|TRBJ2-6*01|Sus scrofa_Duroc|F|J-REGION|378718..378764|47 nt|2| | | |15 AA|15+0=15| | | 24 | SYEQIFGPGTRLTVI 25 | >IMGT000039|TRBJ3-1*01|Sus scrofa_Duroc|F|J-REGION|367542..367588|47 nt|2| | | |15 AA|15+0=15| | | 26 | YAEQHFGPGTRLTVL 27 | >IMGT000039|TRBJ3-2*01|Sus scrofa_Duroc|F|J-REGION|367737..367785|49 nt|1| | | |16 AA|16+0=16| | | 28 | NAAQLYFGDGSRLTVL 29 | >IMGT000039|TRBJ3-3*01|Sus scrofa_Duroc|F|J-REGION|367943..367991|49 nt|1| | | |16 AA|16+0=16| | | 30 | STDPLYFGEGTRLTVL 31 | >IMGT000039|TRBJ3-4*01|Sus scrofa_Duroc|F|J-REGION|368093..368141|49 nt|1| | | |16 AA|16+0=16| | | 32 | SQNTQHFGPGTWLTVL 33 | >IMGT000039|TRBJ3-5*01|Sus scrofa_Duroc|F|J-REGION|368213..368260|48 nt|3| | | |15 AA|15+0=15| | | 34 | SETQYFGPGTRLLVL 35 | >IMGT000039|TRBJ3-7*01|Sus scrofa_Duroc|F|J-REGION|368536..368582|47 nt|2| | | |15 AA|15+0=15| | | 36 | SQERYFGPGTRLTII -------------------------------------------------------------------------------- /resource/TR/pig/TRBJ-CDR3-DNA.fa: -------------------------------------------------------------------------------- 1 | >IMGT000039|TRBJ1-1*01|Sus scrofa_Duroc|F|J-REGION|356789..356836|48 nt|3| | | | |48+0=48| | | 2 | caaacactgaagtcttctttggaggaggcaccaggctcacggttgtgg 3 | >IMGT000039|TRBJ1-2*01|Sus scrofa_Duroc|F|J-REGION|356924..356967|44 nt|2| | | | |44+0=44| | | 4 | ctatgactataacttcggcccagggaccaagctgacggttgtag 5 | >IMGT000039|TRBJ1-3*01|Sus scrofa_Duroc|F|J-REGION|357205..357254|50 nt|2| | | | |50+0=50| | | 6 | ctttggagacacctgctttttcggggagggaagccagctcactgtcgtag 7 | >IMGT000039|TRBJ1-5*01|Sus scrofa_Duroc|F|J-REGION|357877..357927|51 nt|3| | | | |51+0=51| | | 8 | tgaccaatgaaaagctcattttcggcagtggaacgaagctttctgtcctgg 9 | >IMGT000039|TRBJ1-6*01|Sus scrofa_Duroc|F|J-REGION|358119..358168|50 nt|2| | | | |50+0=50| | | 10 | gagcaaccaggcgcagcattttggagatgggactcgagtctctgtcctag 11 | >IMGT000039|TRBJ1-7*01|Sus scrofa_Duroc|F|J-REGION|358575..358627|53 nt|2| | | | |53+0=53| | | 12 | ttcctataattcgcccctccacttcgggctgggcaccaggctcacggtgacag 13 | >IMGT000039|TRBJ2-1*01|Sus scrofa_Duroc|F|J-REGION|377857..377906|50 nt|2| | || |50+0=50| | | 14 | ctcctacaatgacctgcatttcggaccaggaaccaggctcactgtgctgg 15 | >IMGT000039|TRBJ2-2*01|Sus scrofa_Duroc|F|J-REGION|378057..378107|51 nt|3| | | | |51+0=51| | | 16 | gaaacacggggcagctgtattttggggacggttccaagctgactgtgctgg 17 | >IMGT000039|TRBJ2-3*01|Sus scrofa_Duroc|F|J-REGION|378280..378327|48 nt|3| | | | |48+0=48| | | 18 | agcaaaacattcagtattttggcccaggcacacggctgacggtgctag 19 | >IMGT000039|TRBJ2-4*01|Sus scrofa_Duroc|F|J-REGION|378394..378441|48 nt|3| | | | |48+0=48| | | 20 | actcacagacccagtactttgggccaggcacgcggctgctggtgctag 21 | >IMGT000039|TRBJ2-5*01|Sus scrofa_Duroc|F|J-REGION|378492..378544|53 nt|2| | | | |53+0=53| | | 22 | cttaacaggggccaccctgacctttggggctggcagccggctgaccgtggtgg 23 | >IMGT000039|TRBJ2-6*01|Sus scrofa_Duroc|F|J-REGION|378718..378764|47 nt|2| | | | |47+0=47| | | 24 | ttcctatgagcagattttcggcccgggcaccaggctcacggtcatag 25 | >IMGT000039|TRBJ3-1*01|Sus scrofa_Duroc|F|J-REGION|367542..367588|47 nt|2| | | | |47+0=47| | | 26 | gtacgctgagcagcattttggaccaggaaccaggctcactgtgctgg 27 | >IMGT000039|TRBJ3-2*01|Sus scrofa_Duroc|F|J-REGION|367737..367785|49 nt|1| | | | |49+0=49| | | 28 | aatgcggcacagctgtactttggggatggttccaggctgactgtgctgg 29 | >IMGT000039|TRBJ3-3*01|Sus scrofa_Duroc|F|J-REGION|367943..367991|49 nt|1| | | | |49+0=49| | | 30 | agcacagaccctctgtatttcggcgagggcacccgcctgacagtgctag 31 | >IMGT000039|TRBJ3-4*01|Sus scrofa_Duroc|F|J-REGION|368093..368141|49 nt|1| | | | |49+0=49| | | 32 | agtcaaaacactcagcactttggcccaggcacctggctgacggtgctag 33 | >IMGT000039|TRBJ3-5*01|Sus scrofa_Duroc|F|J-REGION|368213..368260|48 nt|3| | | | |48+0=48| | | 34 | attcagagacccagtacttcgggccgggcacccggctcctggtgctag 35 | >IMGT000039|TRBJ3-7*01|Sus scrofa_Duroc|F|J-REGION|368536..368582|47 nt|2| | | | |47+0=47| | | 36 | ctctcaggagcggtattttggcccaggcaccaggctcaccatcatag -------------------------------------------------------------------------------- /resource/TR/pig/TRBJ-gai1-DNA.fa: -------------------------------------------------------------------------------- 1 | >TRBJ1-1*01 IMGT000039|TRBJ1-1*01|Sus scrofa_Duroc|F|J-REGION|356789..356836|48 nt|3| | | | |48+0=48| | | 2 | tttggaggaggcaccaggctcacggttgtg 3 | >TRBJ1-2*01 IMGT000039|TRBJ1-2*01|Sus scrofa_Duroc|F|J-REGION|356924..356967|44 nt|2| | | | |44+0=44| | | 4 | ttcggcccagggaccaagctgacggttgta 5 | >TRBJ1-3*01 IMGT000039|TRBJ1-3*01|Sus scrofa_Duroc|F|J-REGION|357205..357254|50 nt|2| | | | |50+0=50| | | 6 | tttggagacacctgctttttcggggaggga 7 | >TRBJ1-5*01 IMGT000039|TRBJ1-5*01|Sus scrofa_Duroc|F|J-REGION|357877..357927|51 nt|3| | | | |51+0=51| | | 8 | ttcggcagtggaacgaagctttctgtcctg 9 | >TRBJ1-6*01 IMGT000039|TRBJ1-6*01|Sus scrofa_Duroc|F|J-REGION|358119..358168|50 nt|2| | | | |50+0=50| | | 10 | tttggagatgggactcgagtctctgtccta 11 | >TRBJ1-7*01 IMGT000039|TRBJ1-7*01|Sus scrofa_Duroc|F|J-REGION|358575..358627|53 nt|2| | | | |53+0=53| | | 12 | ttcgggctgggcaccaggctcacggtgaca 13 | >TRBJ2-1*01 IMGT000039|TRBJ2-1*01|Sus scrofa_Duroc|F|J-REGION|377857..377906|50 nt|2| | || |50+0=50| | | 14 | ttcggaccaggaaccaggctcactgtgctg 15 | >TRBJ2-2*01 IMGT000039|TRBJ2-2*01|Sus scrofa_Duroc|F|J-REGION|378057..378107|51 nt|3| | | | |51+0=51| | | 16 | tttggggacggttccaagctgactgtgctg 17 | >TRBJ2-3*01 IMGT000039|TRBJ2-3*01|Sus scrofa_Duroc|F|J-REGION|378280..378327|48 nt|3| | | | |48+0=48| | | 18 | tttggcccaggcacacggctgacggtgcta 19 | >TRBJ2-4*01 IMGT000039|TRBJ2-4*01|Sus scrofa_Duroc|F|J-REGION|378394..378441|48 nt|3| | | | |48+0=48| | | 20 | tttgggccaggcacgcggctgctggtgcta 21 | >TRBJ2-5*01 IMGT000039|TRBJ2-5*01|Sus scrofa_Duroc|F|J-REGION|378492..378544|53 nt|2| | | | |53+0=53| | | 22 | tttggggctggcagccggctgaccgtggtg 23 | >TRBJ2-6*01 IMGT000039|TRBJ2-6*01|Sus scrofa_Duroc|F|J-REGION|378718..378764|47 nt|2| | | | |47+0=47| | | 24 | ttcggcccgggcaccaggctcacggtcata 25 | >TRBJ3-1*01 IMGT000039|TRBJ3-1*01|Sus scrofa_Duroc|F|J-REGION|367542..367588|47 nt|2| | | | |47+0=47| | | 26 | tttggaccaggaaccaggctcactgtgctg 27 | >TRBJ3-2*01 IMGT000039|TRBJ3-2*01|Sus scrofa_Duroc|F|J-REGION|367737..367785|49 nt|1| | | | |49+0=49| | | 28 | tttggggatggttccaggctgactgtgctg 29 | >TRBJ3-3*01 IMGT000039|TRBJ3-3*01|Sus scrofa_Duroc|F|J-REGION|367943..367991|49 nt|1| | | | |49+0=49| | | 30 | ttcggcgagggcacccgcctgacagtgcta 31 | >TRBJ3-4*01 IMGT000039|TRBJ3-4*01|Sus scrofa_Duroc|F|J-REGION|368093..368141|49 nt|1| | | | |49+0=49| | | 32 | tttggcccaggcacctggctgacggtgcta 33 | >TRBJ3-5*01 IMGT000039|TRBJ3-5*01|Sus scrofa_Duroc|F|J-REGION|368213..368260|48 nt|3| | | | |48+0=48| | | 34 | ttcgggccgggcacccggctcctggtgcta 35 | >TRBJ3-7*01 IMGT000039|TRBJ3-7*01|Sus scrofa_Duroc|F|J-REGION|368536..368582|47 nt|2| | | | |47+0=47| | | 36 | tttggcccaggcaccaggctcaccatcata 37 | -------------------------------------------------------------------------------- /resource/TR/pig/TRBJ-gai1-DNA.fa.amb: -------------------------------------------------------------------------------- 1 | 540 18 0 2 | -------------------------------------------------------------------------------- /resource/TR/pig/TRBJ-gai1-DNA.fa.ann: -------------------------------------------------------------------------------- 1 | 540 18 11 2 | 0 TRBJ1-1*01 IMGT000039|TRBJ1-1*01|Sus scrofa_Duroc|F|J-REGION|356789..356836|48 nt|3| | | | |48+0=48| | | 3 | 0 30 0 4 | 0 TRBJ1-2*01 IMGT000039|TRBJ1-2*01|Sus scrofa_Duroc|F|J-REGION|356924..356967|44 nt|2| | | | |44+0=44| | | 5 | 30 30 0 6 | 0 TRBJ1-3*01 IMGT000039|TRBJ1-3*01|Sus scrofa_Duroc|F|J-REGION|357205..357254|50 nt|2| | | | |50+0=50| | | 7 | 60 30 0 8 | 0 TRBJ1-5*01 IMGT000039|TRBJ1-5*01|Sus scrofa_Duroc|F|J-REGION|357877..357927|51 nt|3| | | | |51+0=51| | | 9 | 90 30 0 10 | 0 TRBJ1-6*01 IMGT000039|TRBJ1-6*01|Sus scrofa_Duroc|F|J-REGION|358119..358168|50 nt|2| | | | |50+0=50| | | 11 | 120 30 0 12 | 0 TRBJ1-7*01 IMGT000039|TRBJ1-7*01|Sus scrofa_Duroc|F|J-REGION|358575..358627|53 nt|2| | | | |53+0=53| | | 13 | 150 30 0 14 | 0 TRBJ2-1*01 IMGT000039|TRBJ2-1*01|Sus scrofa_Duroc|F|J-REGION|377857..377906|50 nt|2| | || |50+0=50| | | 15 | 180 30 0 16 | 0 TRBJ2-2*01 IMGT000039|TRBJ2-2*01|Sus scrofa_Duroc|F|J-REGION|378057..378107|51 nt|3| | | | |51+0=51| | | 17 | 210 30 0 18 | 0 TRBJ2-3*01 IMGT000039|TRBJ2-3*01|Sus scrofa_Duroc|F|J-REGION|378280..378327|48 nt|3| | | | |48+0=48| | | 19 | 240 30 0 20 | 0 TRBJ2-4*01 IMGT000039|TRBJ2-4*01|Sus scrofa_Duroc|F|J-REGION|378394..378441|48 nt|3| | | | |48+0=48| | | 21 | 270 30 0 22 | 0 TRBJ2-5*01 IMGT000039|TRBJ2-5*01|Sus scrofa_Duroc|F|J-REGION|378492..378544|53 nt|2| | | | |53+0=53| | | 23 | 300 30 0 24 | 0 TRBJ2-6*01 IMGT000039|TRBJ2-6*01|Sus scrofa_Duroc|F|J-REGION|378718..378764|47 nt|2| | | | |47+0=47| | | 25 | 330 30 0 26 | 0 TRBJ3-1*01 IMGT000039|TRBJ3-1*01|Sus scrofa_Duroc|F|J-REGION|367542..367588|47 nt|2| | | | |47+0=47| | | 27 | 360 30 0 28 | 0 TRBJ3-2*01 IMGT000039|TRBJ3-2*01|Sus scrofa_Duroc|F|J-REGION|367737..367785|49 nt|1| | | | |49+0=49| | | 29 | 390 30 0 30 | 0 TRBJ3-3*01 IMGT000039|TRBJ3-3*01|Sus scrofa_Duroc|F|J-REGION|367943..367991|49 nt|1| | | | |49+0=49| | | 31 | 420 30 0 32 | 0 TRBJ3-4*01 IMGT000039|TRBJ3-4*01|Sus scrofa_Duroc|F|J-REGION|368093..368141|49 nt|1| | | | |49+0=49| | | 33 | 450 30 0 34 | 0 TRBJ3-5*01 IMGT000039|TRBJ3-5*01|Sus scrofa_Duroc|F|J-REGION|368213..368260|48 nt|3| | | | |48+0=48| | | 35 | 480 30 0 36 | 0 TRBJ3-7*01 IMGT000039|TRBJ3-7*01|Sus scrofa_Duroc|F|J-REGION|368536..368582|47 nt|2| | | | |47+0=47| | | 37 | 510 30 0 38 | -------------------------------------------------------------------------------- /resource/TR/pig/TRBJ-gai1-DNA.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/pig/TRBJ-gai1-DNA.fa.bwt -------------------------------------------------------------------------------- /resource/TR/pig/TRBJ-gai1-DNA.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/pig/TRBJ-gai1-DNA.fa.pac -------------------------------------------------------------------------------- /resource/TR/pig/TRBJ-gai1-DNA.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/pig/TRBJ-gai1-DNA.fa.sa -------------------------------------------------------------------------------- /resource/TR/pig/TRBV-CDR3-AA.fa: -------------------------------------------------------------------------------- 1 | >IMGT000039|TRBV1*01|Sus scrofa_Duroc|F|V-REGION|61274..61560|287 nt|1| | ||95 AA|95+0=95| | | 2 | ASLVEQRPRWVLVRRGQAETLHCTLRNSQYPWMSWYQQDSQGQLQVLASLGNVGDKEATS 3 | LPGADYQATRVSDTELRLLVANVTQRRTLFCTCSE 4 | >IMGT000039|TRBV10*01|Sus scrofa_Duroc|F|V-REGION|214773..215059|287 nt|1| | | |95 AA|95+0=95| | | 5 | EAWITQSPRYEITVTGETVALQCYQTYNHDCVYWYQQDQGHGLRLIFYTCDVGILNKEEV 6 | PNGYNVSRPSMEDFSLILESVVPSRTSVYLCASSN 7 | >IMGT000039|TRBV11*01|Sus scrofa_Duroc|F|V-REGION|216751..217040|290 nt|1| | | |96 AA|96+0=96| | | 8 | EGGVVQSPRYKITEERQTVALWCDPISGHNLLSWYRQTLRAGLELLIYFEEEADINVSQL 9 | PQKRYFAERPEGAKSTLRIQPTELGDSAVYVCASRL 10 | >IMGT000039|TRBV12-1*01|Sus scrofa_Duroc|F|V-REGION|225338..225627|290 nt|1| | ||96 AA|96+0=96| | | 11 | DAGVSQAPRHEVTEVGQSVTLRCQPISGHESLYWYRQTLGQGLEFLVYFRNGDAIDESGM 12 | PKDRFSAKMLNTSFSTLKIQPTGPRDSATYVCASSV 13 | >IMGT000039|TRBV12-2*01|Sus scrofa_Duroc|P|V-REGION|234899..235188|290 nt|1| | | |96 AA|96+0=96| | | 14 | DVGVTQTPRHEVTKVGQEVTLDCQPISGHESLYWYRQTPGQGLEFLIYFNNGSPVDKSGM 15 | PKGRFSADMPNASFSILKIQTTEPRDSATYLCASSI 16 | >IMGT000039|TRBV14*01|Sus scrofa_Duroc|F|V-REGION|239718..240007|290 nt|1| | | |96 AA|96+0=96| | | 17 | PVGVTQFPSHRVIKKEEAVSMRCDPMSGHEYLFWYQRAVGNEMKFFKYFLESSVQDESGM 18 | PRERFSAERTEGTSSVLQVHSAKLEDSGDYFCASAQ 19 | >IMGT000039|TRBV15*01|Sus scrofa_Duroc|F|V-REGION|241665..241951|287 nt|1| | | |95 AA|95+0=95| | | 20 | GAMVTQNPRYQVTRRGTPVNLSCFQNMNHDAMYWYQQKPSQAPKLLFYYYDEVLNSEKDT 21 | SENFKGSRPNPSFCSLGIRSPDLGDSAVYLCASSR 22 | >IMGT000039|TRBV19*01|Sus scrofa_Duroc|F|V-REGION|255946..256232|287 nt|1| | | |95 AA|95+0=95| | | 23 | DGGITQTPKYLFKEEGQEVTLECKQDFNHDAMYWYRQDPGQGLRLIYFSLVVPDVQKADI 24 | ASGYNASREKKAFFPLTVTLTQKNQTSLYLCASSI 25 | >IMGT000039|TRBV2-1*01|Sus scrofa_Duroc|P|V-REGION|140273..140562|290 nt|1| | ||96 AA|96+0=96| | | 26 | EPGVRQSPRHHITKSGQNVTLRCAPIPGHQYIYWYRQTLGKGLEFLMSIYNNVPSEKANF 27 | LKDRFSAERSGGTYLTLKIQPAERGDSALFLCASSS 28 | >IMGT000039|TRBV2-4*01|Sus scrofa_Duroc|F|V-REGION|158933..159222|290 nt|1| | | |96 AA|96+0=96| | | 29 | EPGVRQSPCHHITKSGQNVTLRCDPIPGHLYIYWYRQTLGKGVEFLMSIYNREPPQNADF 30 | LTERFSAEMPDDTYLTLKIQPAERGDSALFLCASSS 31 | >IMGT000039|TRBV20-1*01|Sus scrofa_Duroc|F|V-REGION|261529..261821|293 nt|1| | | |97 AA|97+0=97| | | 32 | GALVSQHPSRAICKSGASVTIQCRTVDFQTTTMFWYHQFPEQGPLLIATSNMGSNATYEK 33 | GFNSTKFLISHPDLTFSSLVVRRVHPADSSLYLCGAS 34 | >IMGT000039|TRBV20-2*01|Sus scrofa_Duroc|F|V-REGION|269806..270098|293 nt|1| | | |97 AA|97+0=97| | | 35 | GALVSQHPSRAICKSGASVTIQCRTVDLQAITMFWYHQFPEQGPLLIATSNMGSNATYEK 36 | GYNSAKFLISHPDQTFSSLVVRSVHPADSSLYLCAAS 37 | >IMGT000039|TRBV20-3*01|Sus scrofa_Duroc|F|V-REGION|278176..278468|293 nt|1| | | |97 AA|97+0=97| | | 38 | GALVSQHPGRAICKSGASVTIQCRTVDLQATTMFWYHQFPEQGPLLIATSNMGSNATYEK 39 | GYNSAKFLISHPNQRFSSLVVRSVHPADSSLYFCGAS 40 | >IMGT000039|TRBV21*01|Sus scrofa_Duroc|F|V-REGION|287973..288259|287 nt|1| | | |95 AA|95+0=95| | | 41 | DTQVTQSPGYLVKGKEQKAKMECVPIKGHSYVYWYWKKLEEALEFLVYLQNQKITDETEV 42 | FKQRFTAECLKNSCSLGINSTEAGDSAVFFCASSK 43 | >IMGT000039|TRBV24*01|Sus scrofa_Duroc|F|V-REGION|300189..300476|288 nt|1| | ||96 AA|96+0=96| | | 44 | DAAVTQIPRNKITNTGKRTVLECSQTNDHEYMYWYRQDPGEGLRSIYYSYDIKSFNQGEV 45 | ASGYNVSREEKERFFLYLESASPNHSALYFCASSYS 46 | >IMGT000039|TRBV25*01|Sus scrofa_Duroc|F|V-REGION|304983..305269|287 nt|1| | | |95 AA|95+0=95| | | 47 | DAGVHQTPRHCVIGTGKKITLECSQTMGHDNMYWYQQDLGMELQLIHYSYGVNSTEKGER 48 | PSESTVSRLRKDHFSLTLMATSPSQTSRYFCASSE 49 | >IMGT000039|TRBV27*01|Sus scrofa_Duroc|F|V-REGION|321167..321453|287 nt|1| | | |95 AA|95+0=95| | | 50 | EANVTQSPSHRIAETKKTLTMTCSQNMDHDAMYWYRQDPGLGPKLIYFSRNVDLVEKGDI 51 | PDGYNVSRKEKPNFPLILESASANQTSLYLCASSV 52 | >IMGT000039|TRBV28*01|Sus scrofa_Duroc|F|V-REGION|331821..332107|287 nt|1| | | |95 AA|95+0=95| | | 53 | DAKVTQTPGYLVKRMGEKVLIECVPDMNHERMFWYLQDPALGLQLLHLSYDANLVEKGDA 54 | SYGYSVSRKKREGFLLTLESASTNQTSVYLCTSSE 55 | >IMGT000039|TRBV29*01|Sus scrofa_Duroc|F|V-REGION|336397..336686|290 nt|1| | | |96 AA|96+0=96| | | 56 | GVLLSQKPSRDICQRGTSVMIQCQVDSEFTYMYWYRQLLGQSLTLMAAVGRDFEATYESG 57 | FTKEKFPISRPNLMFSILTVSNVSSEDSSSYFCSAG 58 | >IMGT000039|TRBV3*01|Sus scrofa_Duroc|F|V-REGION|125798..126084|287 nt|1| | | |95 AA|95+0=95| | | 59 | DTAVFQTPKYLIIQTRNKRSLKCEQKLSHDSMYWYKQGFKQLLEIMFIYNNKELILNETV 60 | PRRFLPESPDKAHLYLHIDSLEPGDSAVYFCASS* 61 | >IMGT000039|TRBV30*01|Sus scrofa_Duroc|F|V-REGION|396651..396937|287 nt|1| | | |95 AA|95+0=95| | | 62 | AQTIHQWPATRVQLVGSALSLECTVKGVSSPSLYWYRQATGGGDLQLLFYSIGVDQKDPE 63 | KLQNFNASRPQDGLFILSSTKLLLSNSGFYLCAWS 64 | >IMGT000039|TRBV4-1*01|Sus scrofa_Duroc|F|V-REGION|136578..136864|287 nt|1| | | |95 AA|95+0=95| | | 65 | DTGVTQTPRYLVLGTRDKRSLTCEQDLGHNAMYWYKQSAQNPIELMFTCNNKEPTRNESV 66 | PSRFRLDCPESSSLYLHVDALKPEDSAVYLCASSR 67 | >IMGT000039|TRBV4-3*01|Sus scrofa_Duroc|F|V-REGION|149054..149340|287 nt|1| | | |95 AA|95+0=95| | | 68 | DTGVTQTPRYLVLGTRDKRSLTCEQDLGHNAMYWYKQSAQKPPELMFTCNYEDRTGNESV 69 | PSRFSPKCPENSPLYLHVDALKPEDSAVYLCASSR 70 | >IMGT000039|TRBV4-4*01|Sus scrofa_Duroc|F|V-REGION|154983..155269|287 nt|1| | | |95 AA|95+0=95| | | 71 | DTGVTQTPRYLVLGTRDKRSLTCEQDLGHNAMYWYKQSAQKPPELMFTCNYEDRTGNESV 72 | PSRFSPKCPENSPLYLHVDALKPEDSAVYLCASSR 73 | >IMGT000039|TRBV4-5*01|Sus scrofa_Duroc|F|V-REGION|161869..162155|287 nt|1| | | |95 AA|95+0=95| | | 74 | DTGVTQTPRYLVLGTRDKRSLTCEQDLGHNAMYWYKQSAQKPPELMFLCNLKDITENETI 75 | PSRFSPKCPESSPLYLHVDALKPEDSAVYLCASSR 76 | >IMGT000039|TRBV5-1*01|Sus scrofa_Duroc|F|V-REGION|177700..177985|286 nt|1| | | |95 AA|95+0=95| | | 77 | DSGVTQTPRHLIQARGQQVTLRCSPVSGHLSVYWYQQALNQGPQFLFEFYDQKQSAKGNF 78 | SDRFSAQHFSNSLNELTVKFLELRDSALYLCASSL 79 | >IMGT000039|TRBV5-3*01|Sus scrofa_Duroc|F|V-REGION|199086..199371|286 nt|1| | | |95 AA|95+0=95| | | 80 | AAGVTQTPRHVIKSTGQTVTLRCSPVSGHLSVSWYLQALNQGPQFLFEFYDQMPRAKGNV 81 | SDRFSVQQPSNSLSELTVKFSELTDSSLYLCASSL 82 | >IMGT000039|TRBV6*01|Sus scrofa_Duroc|P|V-REGION|186645..186930|286 nt|1| | | |95 AA|95+0=95| | | 83 | SAGVTQPPRFQVLRTGQSMTLNRAQDLKHDSMSWYRQDSGQELRLIHYSVGSGITDKGDV 84 | PDGYSVSRSNTENFTLMLPSASPAQTSV*FCASSY 85 | >IMGT000039|TRBV7-1*01|Sus scrofa_Duroc|F|V-REGION|189865..190154|290 nt|1| | | |96 AA|96+0=96| | | 86 | GAGVSQSPRHRVTGRNQSIALRCDPVSGHNGLYWYRQALGQGLEFLTYFQSKEEPDKLEL 87 | RNDRFSAKRPEGSVSHLTILRVEPQDSAVYLCASSL 88 | >IMGT000039|TRBV7-2*01|Sus scrofa_Duroc|F|V-REGION|204518..204807|290 nt|1| | | |96 AA|96+0=96| | | 89 | GAGVSQSPRHRVTGRNQTIALRCDPVSGHVYLYWYRQTLGQGLEFLTYFQRNEEQDKLEL 90 | RNGRFSVERPEGSVSHLKIQRVEPQDSAVYLCASSL -------------------------------------------------------------------------------- /resource/TR/pig/TRBV-gai1-DNA.fa.amb: -------------------------------------------------------------------------------- 1 | 8250 30 0 2 | -------------------------------------------------------------------------------- /resource/TR/pig/TRBV-gai1-DNA.fa.ann: -------------------------------------------------------------------------------- 1 | 8250 30 11 2 | 0 TRBV1*01 IMGT000039|TRBV1*01|Sus scrofa_Duroc|F|V-REGION|61274..61560|287 nt|1| | || |287+0=287| | | 3 | 0 273 0 4 | 0 TRBV10*01 IMGT000039|TRBV10*01|Sus scrofa_Duroc|F|V-REGION|214773..215059|287 nt|1| | | | |287+0=287| | | 5 | 273 273 0 6 | 0 TRBV11*01 IMGT000039|TRBV11*01|Sus scrofa_Duroc|F|V-REGION|216751..217040|290 nt|1| | | | |290+0=290| | | 7 | 546 276 0 8 | 0 TRBV12-1*01 IMGT000039|TRBV12-1*01|Sus scrofa_Duroc|F|V-REGION|225338..225627|290 nt|1| | || |290+0=290| | | 9 | 822 276 0 10 | 0 TRBV12-2*01 IMGT000039|TRBV12-2*01|Sus scrofa_Duroc|P|V-REGION|234899..235188|290 nt|1| | | | |290+0=290| | | 11 | 1098 276 0 12 | 0 TRBV14*01 IMGT000039|TRBV14*01|Sus scrofa_Duroc|F|V-REGION|239718..240007|290 nt|1| | | | |290+0=290| | | 13 | 1374 276 0 14 | 0 TRBV15*01 IMGT000039|TRBV15*01|Sus scrofa_Duroc|F|V-REGION|241665..241951|287 nt|1| | | | |287+0=287| | | 15 | 1650 273 0 16 | 0 TRBV19*01 IMGT000039|TRBV19*01|Sus scrofa_Duroc|F|V-REGION|255946..256232|287 nt|1| | | | |287+0=287| | | 17 | 1923 273 0 18 | 0 TRBV2-1*01 IMGT000039|TRBV2-1*01|Sus scrofa_Duroc|P|V-REGION|140273..140562|290 nt|1| | || |290+0=290| | | 19 | 2196 276 0 20 | 0 TRBV2-4*01 IMGT000039|TRBV2-4*01|Sus scrofa_Duroc|F|V-REGION|158933..159222|290 nt|1| | | | |290+0=290| | | 21 | 2472 276 0 22 | 0 TRBV20-1*01 IMGT000039|TRBV20-1*01|Sus scrofa_Duroc|F|V-REGION|261529..261821|293 nt|1| | | | |293+0=293| | | 23 | 2748 282 0 24 | 0 TRBV20-2*01 IMGT000039|TRBV20-2*01|Sus scrofa_Duroc|F|V-REGION|269806..270098|293 nt|1| | | | |293+0=293| | | 25 | 3030 282 0 26 | 0 TRBV20-3*01 IMGT000039|TRBV20-3*01|Sus scrofa_Duroc|F|V-REGION|278176..278468|293 nt|1| | | | |293+0=293| | | 27 | 3312 282 0 28 | 0 TRBV21*01 IMGT000039|TRBV21*01|Sus scrofa_Duroc|F|V-REGION|287973..288259|287 nt|1| | | | |287+0=287| | | 29 | 3594 273 0 30 | 0 TRBV24*01 IMGT000039|TRBV24*01|Sus scrofa_Duroc|F|V-REGION|300189..300476|288 nt|1| | || |288+0=288| | | 31 | 3867 273 0 32 | 0 TRBV25*01 IMGT000039|TRBV25*01|Sus scrofa_Duroc|F|V-REGION|304983..305269|287 nt|1| | | | |287+0=287| | | 33 | 4140 273 0 34 | 0 TRBV27*01 IMGT000039|TRBV27*01|Sus scrofa_Duroc|F|V-REGION|321167..321453|287 nt|1| | | | |287+0=287| | | 35 | 4413 273 0 36 | 0 TRBV28*01 IMGT000039|TRBV28*01|Sus scrofa_Duroc|F|V-REGION|331821..332107|287 nt|1| | | | |287+0=287| | | 37 | 4686 273 0 38 | 0 TRBV29*01 IMGT000039|TRBV29*01|Sus scrofa_Duroc|F|V-REGION|336397..336686|290 nt|1| | | | |290+0=290| | | 39 | 4959 279 0 40 | 0 TRBV3*01 IMGT000039|TRBV3*01|Sus scrofa_Duroc|F|V-REGION|125798..126084|287 nt|1| | | | |287+0=287| | | 41 | 5238 273 0 42 | 0 TRBV30*01 IMGT000039|TRBV30*01|Sus scrofa_Duroc|F|V-REGION|396651..396937|287 nt|1| | | | |287+0=287| | | 43 | 5511 276 0 44 | 0 TRBV4-1*01 IMGT000039|TRBV4-1*01|Sus scrofa_Duroc|F|V-REGION|136578..136864|287 nt|1| | | | |287+0=287| | | 45 | 5787 273 0 46 | 0 TRBV4-3*01 IMGT000039|TRBV4-3*01|Sus scrofa_Duroc|F|V-REGION|149054..149340|287 nt|1| | | | |287+0=287| | | 47 | 6060 273 0 48 | 0 TRBV4-4*01 IMGT000039|TRBV4-4*01|Sus scrofa_Duroc|F|V-REGION|154983..155269|287 nt|1| | | | |287+0=287| | | 49 | 6333 273 0 50 | 0 TRBV4-5*01 IMGT000039|TRBV4-5*01|Sus scrofa_Duroc|F|V-REGION|161869..162155|287 nt|1| | | | |287+0=287| | | 51 | 6606 273 0 52 | 0 TRBV5-1*01 IMGT000039|TRBV5-1*01|Sus scrofa_Duroc|F|V-REGION|177700..177985|286 nt|1| | | | |286+0=286| | | 53 | 6879 273 0 54 | 0 TRBV5-3*01 IMGT000039|TRBV5-3*01|Sus scrofa_Duroc|F|V-REGION|199086..199371|286 nt|1| | | | |286+0=286| | | 55 | 7152 273 0 56 | 0 TRBV6*01 IMGT000039|TRBV6*01|Sus scrofa_Duroc|P|V-REGION|186645..186930|286 nt|1| | | | |286+0=286| | | 57 | 7425 273 0 58 | 0 TRBV7-1*01 IMGT000039|TRBV7-1*01|Sus scrofa_Duroc|F|V-REGION|189865..190154|290 nt|1| | | | |290+0=290| | | 59 | 7698 276 0 60 | 0 TRBV7-2*01 IMGT000039|TRBV7-2*01|Sus scrofa_Duroc|F|V-REGION|204518..204807|290 nt|1| | | | |290+0=290| | | 61 | 7974 276 0 62 | -------------------------------------------------------------------------------- /resource/TR/pig/TRBV-gai1-DNA.fa.bwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/pig/TRBV-gai1-DNA.fa.bwt -------------------------------------------------------------------------------- /resource/TR/pig/TRBV-gai1-DNA.fa.pac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/pig/TRBV-gai1-DNA.fa.pac -------------------------------------------------------------------------------- /resource/TR/pig/TRBV-gai1-DNA.fa.sa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/GuoBioinfoLab/CATT/84760d4905dc3a00fa1600156086e520a6d97677/resource/TR/pig/TRBV-gai1-DNA.fa.sa -------------------------------------------------------------------------------- /test.TRG.CDR3.CATT.csv: -------------------------------------------------------------------------------- 1 | AAseq,NNseq,Prob,Vregion,Jregion,Frequency 2 | CASWDTYKKLF,TGTGCCTCCTGGGACACCTATAAGAAACTCTTT,0.0,M13429|TRGV2*01|Homo,M12961|TRGJ2*01|Homo,1 3 | CALCCYSTGWFKIF,TGTGCCTTGTGTTGTTATAGCACTGGTTGGTTCAAGATATTT,0.0,X15274|TRGV9*02|Homo,X08084|TRGJP1*01|Homo,1 4 | CAAWDRQGTGWFKIF,TGTGCCGCCTGGGACAGGCAGGGCACTGGTTGGTTCAAGATATTT,0.0,M13430|TRGV3*01|Homo,X08084|TRGJP1*01|Homo,1 5 | CATWETTYYKKLF,TGTGCCACCTGGGAGACGACTTATTATAAGAAACTCTTT,0.0,X13355|TRGV5*01|Homo,IMGT000011|TRGJ1*02|Homo,1 6 | CALWEGSHELVKNIKVF,TGCGCCTTGTGGGAGGGAAGTCACGAGTTGGTCAAAAACATCAAGGTATTT,0.0,X15274|TRGV9*02|Homo,M12950|TRGJP*01|Homo,1 7 | CATWDRQGTGWFKIF,TGTGCCACCTGGGACAGGCAGGGCACTGGTTGGTTCAAGATATTT,0.0,M13430|TRGV3*01|Homo,X08084|TRGJP1*01|Homo,1 8 | CATWDGNSDWSKTF,TGTGCCACCTGGGACGGTAATAGTGATTGGAGCAAGACGTTT,0.0,M13430|TRGV3*01|Homo,M16016|TRGJP2*01|Homo,1 9 | CALWESSPHTSMNYYKKLF,TGTGCCTTGTGGGAAAGTTCCCCCCACACGTCAATGAATTATTATAAGAAACTCTTT,0.0,X07205|TRGV9*01|Homo,M12960|TRGJ1*01|Homo,1 10 | --------------------------------------------------------------------------------