├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ └── check-bioc.yml ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── R ├── ClusterHierarchy-class.R ├── EpivizTreeData-class.R ├── TreeIndex-class.R ├── TreeIndex-methods.R ├── TreeViz-class.R ├── TreeViz-methods.R ├── TreeVizApp-class.R ├── helper-functions.R └── startTreeViz.R ├── README.md ├── man ├── ClusterHierarchy-class.Rd ├── ClusterHierarchy.Rd ├── EpivizTreeData-class.Rd ├── TreeIndex-class.Rd ├── TreeIndex-methods.Rd ├── TreeIndex.Rd ├── TreeViz-class.Rd ├── TreeViz-methods.Rd ├── TreeViz.Rd ├── TreeVizApp-class.Rd ├── createFromSCE.Rd ├── createFromSeurat.Rd ├── createTreeViz.Rd ├── dot-generate_hierarchy_tree.Rd ├── dot-generate_leaf_of_table.Rd ├── dot-generate_node_ids.Rd ├── dot-generate_nodes_table.Rd ├── dot-replaceNAFeatures.Rd ├── set_gene_list.Rd └── startTreeviz.Rd ├── tests ├── testthat.R └── testthat │ ├── test-TreeViz.R │ └── tests-start_treeviz.R └── vignettes ├── ExploreTreeViz.Rmd └── images ├── 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