├── .gitignore ├── LICENSE ├── README.md ├── doc ├── HES_expected_columns.csv ├── adr │ ├── chunking_large_data_file_optimisation.md │ ├── comparing_arrivaltime_across_days.md │ ├── creating_continuous_inpatient_spells.md │ ├── creating_inpatient_spells.md │ ├── data_location.md │ ├── data_storage_and_access.md │ ├── frailty_score.md │ ├── hardcoding_variables.md │ ├── imputing_admission_date.md │ └── storing_dates_in_database.md ├── derived_tables.md ├── derived_variables.md ├── flowchart.png ├── logging.md ├── process.md └── update_db_flowchart.PNG ├── src ├── clean.R ├── comorbidities.R ├── db_qc.R ├── derive.R ├── duplicates.R ├── load_data.R ├── pipeline.R └── spells.R └── tests ├── dummy_data ├── AA_1.txt ├── AA_2.txt ├── AA_3.txt ├── IDs.txt ├── IDs_copy.txt └── example_expected.txt └── testthat ├── test_clean.R ├── test_derive.R └── test_load_data.R /.gitignore: -------------------------------------------------------------------------------- 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