├── .gitattributes ├── .github └── workflows │ └── python-publish.yml ├── .gitignore ├── .readthedocs.yaml ├── CITATION.bib ├── CITATION.cff ├── CONTRIBUTING.md ├── LICENSE.md ├── MANIFEST ├── README.md ├── docs ├── Makefile ├── about.rst ├── api │ ├── hypergraphx.communities.core_periphery.rst │ ├── hypergraphx.communities.hy_mmsbm.rst │ ├── hypergraphx.communities.hy_sc.rst │ ├── hypergraphx.communities.hypergraph_mt.rst │ ├── hypergraphx.communities.hyperlink_comm.rst │ ├── hypergraphx.communities.rst │ ├── hypergraphx.core.rst │ ├── hypergraphx.dynamics.rst │ ├── hypergraphx.filters.rst │ ├── hypergraphx.generation.rst │ ├── hypergraphx.linalg.rst │ ├── hypergraphx.measures.rst │ ├── hypergraphx.motifs.rst │ ├── hypergraphx.readwrite.rst │ ├── hypergraphx.representations.rst │ ├── hypergraphx.rst │ ├── hypergraphx.utils.rst │ ├── hypergraphx.viz.rst │ └── modules.rst ├── conf.py ├── index.rst ├── installation.rst └── make.bat ├── hypergraphx ├── __init__.py ├── communities │ ├── __init__.py │ ├── core_periphery │ │ ├── __init__.py │ │ └── model.py │ ├── hy_mmsbm │ │ ├── __init__.py │ │ ├── _linear_ops.py │ │ └── model.py │ ├── hy_sc │ │ ├── __init__.py │ │ └── model.py │ ├── hypergraph_mt │ │ ├── __init__.py │ │ └── model.py │ └── hyperlink_comm │ │ ├── __init__.py │ │ └── hyperlink_communities.py ├── core │ ├── __init__.py │ ├── directed_hypergraph.py │ ├── hypergraph.py │ ├── multiplex_hypergraph.py │ └── temporal_hypergraph.py ├── dynamics │ ├── __init__.py │ ├── contagion.py │ ├── randwalk.py │ ├── synch.py │ └── utils.py ├── filters │ ├── __init__.py │ ├── metadata_filters.py │ └── statistical_filters.py ├── generation │ ├── GAM.py │ ├── __init__.py │ ├── activity_driven.py │ ├── configuration_model.py │ ├── directed_configuration_model.py │ ├── hy_mmsbm_sampling.py │ ├── random.py │ └── scale_free.py ├── linalg │ ├── __init__.py │ └── linalg.py ├── measures │ ├── __init__.py │ ├── degree.py │ ├── directed │ │ ├── __init__.py │ │ ├── degree.py │ │ ├── hyperedge_signature.py │ │ └── reciprocity.py │ ├── edge_similarity.py │ ├── eigen_centralities.py │ ├── multiplex │ │ ├── __init__.py │ │ ├── degree.py │ │ └── overlap.py │ ├── s_centralities.py │ ├── shortest_paths.py │ ├── sub_hypergraph_centrality.py │ └── temporal │ │ ├── __init__.py │ │ ├── temporal_correlations.py │ │ ├── temporal_shortest_paths.py │ │ └── temporal_topological_correlation.py ├── motifs │ ├── __init__.py │ ├── directed_motifs.py │ ├── motifs.py │ └── utils.py ├── readwrite │ ├── __init__.py │ ├── hashing.py │ ├── hif.py │ ├── load.py │ └── save.py ├── representations │ ├── __init__.py │ ├── projections.py │ └── simplicial_complex.py ├── utils │ ├── __init__.py │ ├── cc.py │ ├── community.py │ ├── labeling.py │ └── visits.py └── viz │ ├── __init__.py │ ├── draw_communities.py │ ├── draw_hypergraph.py │ ├── draw_motifs.py │ ├── draw_multilayer_projection.py │ ├── draw_projections.py │ ├── draw_simplicial.py │ └── plot_motifs.py ├── images └── hypergraph.png ├── logo ├── logo.png ├── logo.svg ├── logo_cropped.png └── logo_cropped.svg ├── requirements.txt ├── requirements_docs.txt ├── setup.cfg ├── setup.py ├── test_data ├── hs │ ├── High-School_data_2013.csv │ ├── hs.json │ └── hs_one_class.json ├── justice_data │ ├── hyperedges.txt │ └── weights.txt ├── small_hypergraph1 │ └── hyperedges.txt ├── small_hypergraph2 │ └── hyperedges.txt ├── small_hypergraph3 │ └── hyperedges.txt ├── with_isolated_nodes │ └── hyperedges.txt ├── with_literal_nodes │ └── hyperedges.txt └── workplace │ ├── workplace.dat │ ├── workplace.json │ └── workplace_meta.csv ├── tests ├── conftest.py ├── core │ ├── directed_hypergraphs │ │ ├── test_directed_hypergraph.py │ │ ├── test_reciprocity.py │ │ └── test_signature.py │ ├── hypergraphs │ │ └── test_hypergraphs.py │ ├── multiplex_hypergraphs │ │ └── test_multiplex_hypergraphs.py │ └── temporal_hypergraphs │ │ └── test_temporal_hypergraphs.py ├── filters │ └── test_metadata_filters.py ├── generation │ └── test_random.py ├── linalg │ ├── test_adjacency.py │ ├── test_hye_list_to_binary_incidence.py │ └── test_incidence.py ├── measures │ └── test_sub_hypergraph_centrality.py ├── readwrite │ └── test_hashing.py └── utils │ └── test_visits.py └── tutorials ├── _example_data ├── justice_data │ ├── hyperedges.txt │ └── weights.txt ├── social_contagion.npy ├── temporal_correlations.npy └── walmart_data │ └── walmart-trips-reduced.txt ├── activity_driven.ipynb ├── analysis_paper.ipynb ├── basics.ipynb ├── communities.ipynb ├── directed_measures.ipynb ├── filters.ipynb ├── generation.ipynb ├── motifs.ipynb ├── random_walk.ipynb ├── shortest_paths.ipynb ├── simplicial_contagion.ipynb └── synchronization.ipynb /.gitattributes: -------------------------------------------------------------------------------- 1 | *.ipynb -linguist-detectable 2 | -------------------------------------------------------------------------------- /.github/workflows/python-publish.yml: 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