├── .gitignore ├── LICENSE ├── README.md ├── assets └── overview.jpg ├── near ├── __init__.py ├── datasets │ ├── __init__.py │ ├── refine_dataset.py │ └── seg_dataset.py ├── models │ ├── __init__.py │ ├── losses.py │ └── nn3d │ │ ├── __init__.py │ │ ├── blocks.py │ │ ├── grid.py │ │ └── model.py └── utils │ ├── __init__.py │ ├── misc.py │ ├── multicore.py │ ├── plot3d.py │ └── preprocessing.py ├── repairing ├── near_repairing │ ├── _init_paths_local.py │ ├── config_near.py │ ├── eval_scripts │ │ ├── _init_paths_local.py │ │ ├── config_eval.py │ │ └── eval_script.py │ └── near_repair.py └── seg_repairing │ ├── _init_paths_local.py │ ├── config_seg.py │ ├── eval_scripts │ ├── _init_paths_local.py │ ├── config_eval.py │ ├── eval_seg_alan.py │ ├── eval_seg_diannei_nodule.py │ └── eval_seg_distorted.py │ └── seg_repair.py └── surface_distance ├── __init__.py ├── lookup_tables.py └── metrics.py /.gitignore: -------------------------------------------------------------------------------- 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