├── .gitignore ├── README.md ├── assets ├── architecture.png ├── axial.gif ├── brats.png ├── coronal.gif ├── crf-rnn.png ├── geodesicmap.png └── sagittal.gif ├── configs ├── config_pnet.json └── config_rnet.json ├── data_loaders ├── __init__.py ├── brats2021_3d.py └── transforms.py ├── function_deepigeos.py ├── inference_example.ipynb ├── load_datasets.sh ├── main_deepigeos.py ├── models ├── __init__.py ├── metrics.py └── networks.py ├── train_pnet.py ├── train_rnet.py ├── trainers ├── brats_3d_pnet_trainer.py └── brats_3d_rnet_trainer.py ├── ui_deepigeos.ui └── utils ├── __init__.py ├── config.py ├── device.py ├── dirs.py ├── geodis_toolkits.py ├── logger.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HITLAB-DeepIGeoS/DeepIGeoS/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: 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