├── .gitignore ├── LICENSE ├── README.md ├── configs └── latent-diffusion │ ├── abdomen_base_stage1.yaml │ ├── abdomen_base_stage2.yaml │ ├── abdomen_slice.yaml │ ├── abdomen_stage1.yaml │ ├── abdomen_stage2.yaml │ ├── brain_base_stage1.yaml │ ├── brain_base_stage2.yaml │ ├── brain_slice.yaml │ ├── brain_stage1.yaml │ ├── brain_stage2.yaml │ ├── inference_abdomen.yaml │ ├── inference_abdomen_test.yaml │ ├── inference_brain.yaml │ └── inference_brain_test.yaml ├── environment.yml ├── inference_abdomen_base.py ├── inference_abdomen_ic.py ├── inference_abdomen_icma.py ├── inference_abdomen_ig.py ├── inference_abdomen_igma.py ├── inference_abdomen_slice.py ├── inference_abdomen_test.py ├── inference_brain_base.py ├── inference_brain_ic.py ├── inference_brain_icma.py ├── inference_brain_ig.py ├── inference_brain_igma.py ├── inference_brain_slice.py ├── inference_brain_test.py ├── ldm ├── data │ ├── __init__.py │ ├── base.py │ ├── slice_dataset.py │ ├── volume_dataset.py │ └── volume_dataset_base.py ├── lr_scheduler.py ├── models │ ├── autoencoder.py │ └── diffusion │ │ ├── __init__.py │ │ ├── ddim.py │ │ ├── ddpm.py │ │ ├── ddpm_pseudo3D.py │ │ ├── plms.py │ │ └── sampling_util.py ├── modules │ ├── attention.py │ ├── diffusionmodules │ │ ├── __init__.py │ │ ├── model.py │ │ ├── openaimodel.py │ │ ├── openaimodel_pseudo3D.py │ │ ├── upscaling.py │ │ └── util.py │ ├── distributions │ │ ├── __init__.py │ │ └── distributions.py │ ├── ema.py │ └── encoders │ │ ├── __init__.py │ │ └── modules.py └── util.py ├── main.py ├── misc └── overview.jpg └── models └── first_stage_models └── kl-f8 └── config.yaml /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HKU-MedAI/GEM-3D/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 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