├── .gitignore ├── LICENSE ├── README.md ├── example ├── .gitignore ├── 1000G_DeepVar.sce.tsv ├── 1000G_GATK.sce.tsv ├── Contamination_CHARR_FREEMIX_scatter.png ├── Contamination_CHARR_FREEMIX_upset.png ├── GATKvsDV_metric_distribution.png ├── GATKvsDV_metric_distribution.tsv ├── README.md ├── compare.R ├── plot_simulation_results.R ├── simulation_metric_plot.pdf ├── simulation_metric_plot.png └── simulation_results.tsv ├── nim_compile.sh ├── sceVCF.nimble ├── src ├── sceVCF.nim └── scevcf │ ├── arg_parse.nim │ └── utils.nim └── test ├── input_test.vcf.gz ├── input_test.vcf.gz.csi └── samples.list /.gitignore: -------------------------------------------------------------------------------- 1 | test/large_tests 2 | bin/ 3 | paper/ 4 | localcompile.sh 5 | .DS_Store -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | MIT License 2 | 3 | Copyright (c) 2022 HT Genome Analysis Unit 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy 6 | of this software and associated documentation files (the "Software"), to deal 7 | in the Software without restriction, including without limitation the rights 8 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 9 | copies of the Software, and to permit persons to whom the Software is 10 | furnished to do so, subject to the following conditions: 11 | 12 | The above copyright notice and this permission notice shall be included in all 13 | copies or substantial portions of the Software. 14 | 15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 17 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 18 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 19 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 20 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE 21 | SOFTWARE. 22 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # Sample Contamination Estimate from VCF (SCE-VCF) 2 | 3 | SCE-VCF is a simple tool to evalute sample contamination from sequencing experiments. It uses WGS/WES VCF files to compute few metrics useful to detect potential sample contamination: 4 | 5 | - CHARR: ref read fraction in hom alt vars as proposed by Wenham Lu, Broad Institute 6 | - Mean ref allele AB observed in hom alt genotypes 7 | - heterozygosity ratio (N HQ het / (N HQ het + N HQ hom)) 8 | - rate on inconsistent het calls (het call with AB outside threshold) 9 | 10 | The ideal scenario is a cohort analysis so one can compare value distributions to identify outliers. Even a small cohort of 50 samples works fine in our test. 11 | 12 | Example distributions for contamination values based on 1000G 30X WGS samples and variants identified using either GATK or DeepVariant are provided in the example folder. 13 | 14 | ## Installation 15 | 16 | On most Linux based systems, you can just download the pre-compiled executable from the latest release and it should work out of the box. 17 | 18 | ### Test 19 | 20 | You can test correct execution by running 21 | 22 | ```bash 23 | ./sceVCF -o test/full_test.tsv test/input_test.vcf.gz 24 | ./sceVCF -o test/samples_test.tsv -s test/samples.list test/input_test.vcf.gz 25 | ``` 26 | 27 | This will generate: 28 | 29 | - `test/full_test.tsv` containing results for 10 samples 30 | - `test/samples_test.tsv` containing results for 3 samples 31 | 32 | ### Compile from source 33 | 34 | Compiling the executable with nim has the following requirements: 35 | 36 | - nim >= 1.4.8 37 | - hts >= 0.3.21 38 | - argparse >= 3.0.0 39 | 40 | You can usually install them with `nimble install hts argparse`. 41 | 42 | Then you can clone the repository and compile the executable with `nim c -d:release src/sceVCF.nim`. 43 | 44 | ### Generate a statically linked executable 45 | 46 | If you have singularity installed, you can generate a statically linked executable with the following command: 47 | 48 | ```bash 49 | bash nim_compile.sh 50 | ``` 51 | 52 | See [here](See: https://github.com/brentp/hts-nim#static-builds) for more details on how this works. 53 | 54 | ## Usage 55 | 56 | ```bash 57 | Usage: 58 | sceVCF [options] [vcf ...] 59 | 60 | Arguments: 61 | [vcf ...] input VCF/BCF file(s). Glob pattern allowed 62 | 63 | Options: 64 | -h, --help 65 | -o, --out=OUT Output file (TSV). If not provided output to stdout 66 | -f, --ad_field=AD_FIELD FORMAT field containing the AD values (default: AD) 67 | -a, --af_field=AF_FIELD INFO field containing the allele frequency (default: AF) 68 | -i, --is_refAF AF in the af_field is the REF AF 69 | -t, --refaf_limit=REFAF_LIMIT 70 | Limits of REF AF. Comma-separated lower and upper limit (default: 0.1,0.9) 71 | -l, --het_ab_limit=HET_AB_LIMIT 72 | Comma separated min and max allele balance accepted for het calls (default: 0.25,0.75) 73 | -q, --min_GQ=MIN_GQ Min GQ for hom var to be included in charr computation (default: 20) 74 | -d, --dp_limit=DP_LIMIT Limits of genotype DP. Comma-separated lower and upper limit (default: 20,100) 75 | -s, --samples=SAMPLES Restrict analysis to the given samples. Comma separated list or file wiht one sample per line 76 | -r, --region=REGION Specify genomic region for processing. Format is chr[:start-end]. Comma-separated list of regions or file with 1 region per line. 77 | ``` 78 | 79 | ## How it works 80 | 81 | 1. Multi-allelic variants and variants with REF AF outside the configured limits (`refaf_limit`) are skipped. 82 | 2. Any genotype with DP outside the configure DP limits `dp_limit` is skipped. 83 | 3. Genotypes with GQ less than `min_GQ` are used only to compute inconsistent het rate, but discarded when computed het rate and CHARR. 84 | 4. CHARR is computed as `ADref / (AFref * ADtot)` considering only high-quality hom alt genotypes. 85 | 86 | ## Suggested workflow 87 | 88 | If you are processing a cohort VCF that contains enough samples to reliably estimate the cohort allele frequency and this value is annoteated in the INFO column (usually AF), then you can use your file directly to estimate contamination in each sample. 89 | 90 | **NB.** Decomposing the file with `bcftools norm` may lead to unexpected results due to variants derived from multi-allelic split being included in the computation. We suggest to instead select only biallelic SNPs (for example `bcftools view -f PASS,. -m2 -M2 -v snps`) and then compute contamination metrics on this subset. 91 | 92 | If you are working with a single sample VCF or a small cohort we suggest to proceed as follows: 93 | 94 | 1. Select only PASS bi-allelic SNPs using `bcftools view -f PASS,. -m2 -M2 -v snps` 95 | 2. Annotate the resulting file with AF from large reference population. For example, you can rapidly annotate global AF from gnomAD using echtvar (see [the official repo](https://github.com/brentp/echtvar)) 96 | 3. Perform contamination estimation 97 | 98 | ## Output interpretation 99 | 100 | ### Output table 101 | 102 | | Column | Description | 103 | |--------|-------------| 104 | | SAMPLE | Sample ID as read from input VCF file | 105 | | HOM_TOTAL | Total number of ALT homozygous sites observed for this sample before DP/GQ filters | 106 | | HOM_COVERED | Number of ALT homozygous sites within the configured DP limits | 107 | | HQ_HOM | Number of high quality ALT homozygous sites used in CHARR computation | 108 | | HQ_HOM_RATE | Fraction of HQ hom sites across all hom sites with enough coverage (HQ_HOM / HOM_COVERED) | 109 | | HET_TOTAL | Total number of heterozygous sites observed for this sample before DP/GQ filters | 110 | | HET_COVERED | Number of heterozygous sites within the configured DP limits | 111 | | HQ_HET | Number of high quality heterozygous sites used to compute het rate | 112 | | HQ_HET_RATE | Fraction of HQ het sites across all het sites with enough coverage (HQ_HET / HET_COVERED) | 113 | | CHARR | CHARR value computed as explained above using only HQ hom alt sites | 114 | | MEAN_REF_AB_HOM_ALT | Mean ref allele frequency observed in HQ hom alt sites | 115 | | HETEROZYGOSITY_RATE | Heterozygoisty ratio (Nhet / (Nhet + Nhom)) computed using only HQ genotypes | 116 | | INCONSISTENT_AB_HET_RATE | Fraction of het sites with AB outside threshold across all het sites with enough coverage (this includes all het sites with DP within threshold, disregarding GQ) | 117 | 118 | **NB.** All values reported in the output table are based only on variant passing the global variants filter (PASS, biallelic, SNV only, REF AF within the configured threshold). The number of variants considered for the analysis is reported in the header section. 119 | 120 | ### Samples with no HQ sites 121 | 122 | A warning is given when no HQ homozygous / heterzygous sites are detected since this affects the computation of CHARR value and HETEROZYGOSY_RATE. Samples having zero count for HQ_HOM will not have a CHARR value, and samples with zero count for HQ_HET will have uninformative HETEROZYGOSITY_RATE. 123 | 124 | ## Interpretation of results 125 | 126 | If you have analyzed a large enough cohort or you have a cohort processed with a similar pipeline for variant-calling, we suggest to identify contaminated samples considering the distribution of CHARR, HETEROZYGOSITY_RATE, and INCONSISTENT_AB_HET_RATE values across all individuals. For example, one can mark as possibly contaminated the outliers with values larger than mean + 2 or 3 SD. 127 | 128 | When evaluating a single sample, a CHARR value of 0.02-0.03 may indicate a subtle contamination (1-5%) and a value larger than 0.03 is strongly suggestive of contamination (contamination > 5%). However, we suggest to jointly evaluate all the 3 metrics when determining contaminated sample. When a sample is heavily contaminated (> 20%), CHARR metric may look good, but you can observe high value for HETEROZYGOSITY_RATE (>= 0.7) and INCONSISTENT_AB_HET_RATE (>= 0.1). 129 | 130 | In the end we suggest the following thresholds for contamined samples: 131 | 132 | - WARNING: CHARR > 0.02 | INCONSISTENT_AB_HET_RATE > 0.1 133 | - FAIL: CHARR > 0.03 | INCONSISTENT_AB_HET_RATE > 0.15 134 | 135 | This approach classify samples similarly to traditional freemix approach, but it is more robust to contamination of different magnitude and it is more sensitive to subtle contamination. 136 | 137 | ### Simulation results 138 | 139 | To simulate contamination we generated mixed samples using 2 samples from the GIAB reference datasets. Briefly, we generated a 30X BAM file of NA24631 GIAB sample and then mixed this with various proportion of reads from NA24385. See results below and plots in the example folder. 140 | 141 | |SAMPLE |HQ_HOM |HQ_HOM_RATE|HQ_HET |HQ_HET_RATE|CHARR |MEAN_REF_AB_HOM_ALT|HETEROZYGOSITY_RATE|INCONSISTENT_AB_HET_RATE| 142 | |---------------|-------|-----------|-------|-----------|-------|-------------------|-------------------|------------------------| 143 | |original_sample|1101063|1.00000 |1516921|0.96191 |0.01144|0.00371 |0.57942 |0.00999 | 144 | |cont_0.99_0.01 |1092683|1.00000 |1515890|0.96113 |0.01669|0.00598 |0.58112 |0.01068 | 145 | |cont_0.98_0.02 |1079498|1.00000 |1514989|0.95938 |0.02134|0.00794 |0.58393 |0.01249 | 146 | |cont_0.97_0.03 |1062034|1.00000 |1514340|0.95648 |0.02543|0.00963 |0.58778 |0.01580 | 147 | |cont_0.96_0.04 |1040781|1.00000 |1514274|0.95240 |0.02899|0.01107 |0.59266 |0.02079 | 148 | |cont_0.95_0.05 |1027437|1.00000 |1512849|0.94977 |0.03044|0.01164 |0.59554 |0.02412 | 149 | |cont_0.85_0.15 |741203 |1.00000 |1578589|0.86162 |0.04422|0.01578 |0.68049 |0.15782 | 150 | |cont_0.9_0.1 |874280 |1.00000 |1532181|0.90654 |0.04179|0.01559 |0.63669 |0.08385 | 151 | |cont_0.8_0.2 |635342 |1.00000 |1652251|0.82522 |0.04192|0.01431 |0.72227 |0.22597 | 152 | |cont_0.7_0.3 |505642 |1.00000 |1832859|0.78729 |0.03092|0.00972 |0.78378 |0.29380 | 153 | |cont_0.5_0.5 |409987 |1.00000 |2103835|0.78209 |0.01383|0.00371 |0.83691 |0.29484 | 154 | 155 | ## Running time 156 | 157 | Running time on a single sample WGS VCF containing about 4M variants is ~25 secs. Analysis of the full 1000G cohort VCF containing 2504 samples and about 120M variants takes ~20h. 158 | 159 | ## Notes 160 | 161 | - **AF data:** The tool needs an annotated AF field in the input VCF to compute REF AF and the CHARR values. Ideally, this should be AF computed from the samples in the VCF. Even a small cohort of 50 samples works fine in our test. When analyzing a single sample VCF or a small cohort, we suggest to annotate your file with AF from large external populations (like gnomAD) and then pass the relevant INFO field to `--af-field`. 162 | 163 | - **Multiple input VCFs:** The tool can read multiple VCFs and statistics are then aggregated by sample IDs if there are matching sample IDs across the input VCFs. In this way it's easy to analyze cohort VCFs splitted by chromosome for example. 164 | 165 | - **Subset samples:** User can specify a subset of samples to analyze in the input VCF. Note that some time is required anyway to parse samples initially, so run time will increase as more samples are present in the input VCF 166 | 167 | - **Subset regions** Analysis can be limited to specific chromosome(s) or region(s) by using `--region` option. 168 | 169 | ## Citation 170 | 171 | If you find this tool useful and use include the CHARR metric in your work, please cite the corresponding paper. 172 | 173 | > CHARR efficiently estimates contamination from DNA sequencing data. Lu, Wenhan et al. 174 | The American Journal of Human Genetics, Volume 110, Issue 12, 2068 - 2076 175 | -------------------------------------------------------------------------------- /example/.gitignore: -------------------------------------------------------------------------------- 1 | *.sbatch 2 | *.log 3 | -------------------------------------------------------------------------------- /example/1000G_GATK.sce.tsv: -------------------------------------------------------------------------------- 1 | #SAMPLE HQ_HOM HQ_HOM_RATE HQ_HET HQ_HET_RATE CHARR MEAN_REF_AB_HOM_ALT HETEROZYGOSITY_RATE INCONSISTENT_AB_HET_RATE 2 | HG03937 897928 1.00000 1608647 0.99939 0.00351 0.00128 0.64177 0.01465 3 | NA18638 1059237 1.00000 1595221 0.99957 0.00107 0.00034 0.60096 0.00924 4 | HG01840 1026917 1.00000 1555469 0.99949 0.00097 0.00030 0.60234 0.01256 5 | HG00560 1009557 1.00000 1523244 0.99946 0.00080 0.00025 0.60141 0.01304 6 | NA19921 855971 1.00000 1740760 0.99960 0.00092 0.00028 0.67037 0.01343 7 | HG00341 938754 1.00000 1612348 0.99955 0.00083 0.00026 0.63202 0.01275 8 | HG01815 1019645 1.00000 1534965 0.99946 0.00094 0.00029 0.60086 0.01331 9 | HG00422 1058684 1.00000 1538608 0.99952 0.00111 0.00035 0.59239 0.01134 10 | HG01944 1021507 1.00000 1598562 0.99954 0.00090 0.00028 0.61012 0.01096 11 | NA18574 1046275 1.00000 1525263 0.99953 0.00125 0.00039 0.59313 0.01183 12 | NA18916 986998 1.00000 1588563 0.99950 0.00084 0.00028 0.61678 0.01221 13 | HG03295 972755 1.00000 1555639 0.99946 0.00207 0.00080 0.61527 0.01308 14 | NA19114 960772 1.00000 1554705 0.99955 0.00085 0.00028 0.61806 0.01291 15 | NA19399 962962 1.00000 1579538 0.99952 0.00084 0.00029 0.62125 0.01343 16 | HG00306 931616 1.00000 1640062 0.99955 0.00091 0.00028 0.63774 0.01160 17 | HG02983 981933 1.00000 1570057 0.99949 0.00148 0.00053 0.61523 0.01256 18 | HG03057 950509 1.00000 1495981 0.99954 0.00111 0.00039 0.61148 0.01397 19 | NA19130 990931 1.00000 1571711 0.99949 0.00106 0.00037 0.61332 0.01291 20 | HG01675 896624 1.00000 1600283 0.99953 0.00088 0.00027 0.64091 0.01340 21 | HG03118 979492 1.00000 1578227 0.99955 0.00092 0.00032 0.61704 0.01222 22 | NA19774 922560 1.00000 1645616 0.99951 0.00079 0.00025 0.64077 0.01273 23 | HG02307 954514 1.00000 1607461 0.99951 0.00082 0.00029 0.62743 0.01263 24 | HG03660 947355 1.00000 1695414 0.99950 0.00112 0.00035 0.64153 0.01041 25 | HG04183 964495 1.00000 1712275 0.99950 0.00179 0.00060 0.63968 0.01060 26 | HG03873 938822 1.00000 1658630 0.99957 0.00098 0.00032 0.63856 0.01220 27 | HG01861 1048318 1.00000 1543779 0.99954 0.00085 0.00027 0.59557 0.01095 28 | NA20507 913952 1.00000 1600816 0.99953 0.00137 0.00042 0.63657 0.01332 29 | HG01414 900961 1.00000 1719812 0.99951 0.00089 0.00027 0.65622 0.01213 30 | NA06989 873896 1.00000 1536321 0.99960 0.00107 0.00033 0.63742 0.01433 31 | HG00262 901199 1.00000 1600487 0.99954 0.00075 0.00023 0.63976 0.01303 32 | HG00357 940570 1.00000 1608785 0.99954 0.00090 0.00028 0.63106 0.01213 33 | HG01865 1029922 1.00000 1562700 0.99950 0.00105 0.00034 0.60275 0.01218 34 | NA21095 945523 1.00000 1548308 0.99953 0.00107 0.00033 0.62086 0.01324 35 | NA12282 929078 1.00000 1653475 0.99954 0.00101 0.00032 0.64025 0.01111 36 | HG03162 981020 1.00000 1548428 0.99957 0.00082 0.00027 0.61216 0.01250 37 | HG03991 969001 1.00000 1670132 0.99945 0.00171 0.00057 0.63283 0.01130 38 | NA21114 931556 1.00000 1657025 0.99954 0.00089 0.00028 0.64013 0.01254 39 | HG01970 1083016 1.00000 1362464 0.99945 0.00082 0.00027 0.55714 0.01303 40 | HG01498 914087 1.00000 1638592 0.99953 0.00087 0.00027 0.64191 0.01283 41 | HG02255 956985 1.00000 1619424 0.99954 0.00078 0.00025 0.62856 0.01202 42 | NA18997 1048838 1.00000 1510176 0.99950 0.00117 0.00037 0.59014 0.01284 43 | NA19428 965765 1.00000 1601912 0.99954 0.00081 0.00027 0.62388 0.01243 44 | HG01392 913336 1.00000 1715094 0.99959 0.00091 0.00028 0.65252 0.01129 45 | HG02373 1062780 1.00000 1583873 0.99960 0.00097 0.00031 0.59844 0.00857 46 | HG03410 957180 1.00000 1536270 0.99949 0.00159 0.00057 0.61612 0.01295 47 | HG02497 961651 1.00000 1610406 0.99952 0.00086 0.00029 0.62612 0.01263 48 | HG04035 922821 1.00000 1589928 0.99942 0.00315 0.00119 0.63274 0.01399 49 | HG04146 938289 1.00000 1675060 0.99952 0.00292 0.00106 0.64096 0.01164 50 | HG00159 934426 1.00000 1636432 0.99952 0.00088 0.00028 0.63653 0.01125 51 | HG04096 994189 1.00000 1529059 0.99943 0.00276 0.00100 0.60599 0.01235 52 | NA12283 943998 1.00000 1672007 0.99957 0.00108 0.00034 0.63915 0.00939 53 | NA19669 924372 1.00000 1639127 0.99947 0.00100 0.00031 0.63941 0.01246 54 | HG00187 936686 1.00000 1641998 0.99954 0.00119 0.00037 0.63676 0.01150 55 | HG00362 929913 1.00000 1637456 0.99950 0.00088 0.00028 0.63780 0.01166 56 | HG02260 1049439 1.00000 1496473 0.99951 0.00100 0.00032 0.58779 0.01185 57 | HG02180 1045539 1.00000 1550655 0.99947 0.00080 0.00025 0.59728 0.01278 58 | NA12348 919058 1.00000 1609184 0.99952 0.00087 0.00027 0.63648 0.01276 59 | HG01286 895135 1.00000 1743977 0.99958 0.00089 0.00027 0.66082 0.01062 60 | HG02501 912488 1.00000 1694523 0.99961 0.00103 0.00035 0.64999 0.01215 61 | HG03461 957294 1.00000 1562517 0.99959 0.00087 0.00029 0.62009 0.01250 62 | NA12760 933740 1.00000 1634977 0.99950 0.00155 0.00049 0.63650 0.01168 63 | HG03198 991726 1.00000 1558826 0.99948 0.00187 0.00072 0.61117 0.01217 64 | HG00260 914050 1.00000 1590291 0.99953 0.00098 0.00031 0.63501 0.01335 65 | HG02703 962138 1.00000 1522142 0.99952 0.00103 0.00036 0.61271 0.01387 66 | HG04002 941629 1.00000 1698674 0.99944 0.00123 0.00038 0.64336 0.01246 67 | HG02236 912361 1.00000 1641419 0.99955 0.00083 0.00026 0.64274 0.01188 68 | HG01341 958223 1.00000 1648571 0.99954 0.00093 0.00029 0.63241 0.01160 69 | NA19759 986131 1.00000 1546925 0.99953 0.00081 0.00026 0.61070 0.01277 70 | HG00253 934222 1.00000 1661380 0.99948 0.00117 0.00040 0.64008 0.01145 71 | HG02181 1033107 1.00000 1550817 0.99956 0.00096 0.00033 0.60018 0.01160 72 | HG03103 1014247 1.00000 1574389 0.99884 0.00132 0.00048 0.60819 0.01408 73 | NA18625 1053920 1.00000 1535540 0.99952 0.00096 0.00030 0.59300 0.01165 74 | HG03135 972151 1.00000 1558565 0.99954 0.00093 0.00031 0.61586 0.01332 75 | HG03027 964182 1.00000 1535574 0.99951 0.00134 0.00047 0.61429 0.01406 76 | HG00342 928162 1.00000 1619160 0.99954 0.00092 0.00029 0.63563 0.01188 77 | HG02623 981708 1.00000 1547154 0.99953 0.00132 0.00048 0.61180 0.01252 78 | HG03246 958215 1.00000 1565818 0.99942 0.00229 0.00089 0.62036 0.01310 79 | NA19035 993038 1.00000 1626288 0.99952 0.00086 0.00028 0.62088 0.01197 80 | NA20542 913948 1.00000 1621366 0.99904 0.00188 0.00066 0.63951 0.01418 81 | HG02143 941856 1.00000 1710287 0.99958 0.00113 0.00038 0.64487 0.00918 82 | HG03686 967134 1.00000 1650292 0.99954 0.00184 0.00064 0.63050 0.01158 83 | NA19119 968660 1.00000 1544275 0.99952 0.00080 0.00026 0.61453 0.01347 84 | HG02620 971511 1.00000 1568166 0.99950 0.00165 0.00062 0.61747 0.01270 85 | NA11919 906359 1.00000 1649133 0.99952 0.00156 0.00052 0.64533 0.01272 86 | HG03754 933602 1.00000 1673113 0.99947 0.00162 0.00056 0.64185 0.01178 87 | NA19735 1034211 1.00000 1498577 0.99949 0.00082 0.00027 0.59167 0.01298 88 | HG01878 1036223 1.00000 1567030 0.99950 0.00084 0.00026 0.60195 0.01282 89 | HG03955 992288 1.00000 1559116 0.99954 0.00157 0.00051 0.61108 0.01152 90 | HG04156 942600 1.00000 1696947 0.99955 0.00213 0.00075 0.64289 0.01084 91 | HG00108 917826 1.00000 1620609 0.99949 0.00097 0.00031 0.63843 0.01211 92 | HG04229 884079 1.00000 1600219 0.99951 0.00188 0.00062 0.64413 0.01457 93 | HG00173 906982 1.00000 1611855 0.99953 0.00093 0.00029 0.63992 0.01337 94 | NA19437 956389 1.00000 1588791 0.99953 0.00085 0.00028 0.62424 0.01313 95 | HG04018 956751 1.00000 1651264 0.99952 0.00171 0.00059 0.63315 0.01162 96 | HG03294 953052 1.00000 1543978 0.99951 0.00096 0.00032 0.61833 0.01314 97 | HG02057 1023436 1.00000 1570450 0.99951 0.00081 0.00026 0.60544 0.01240 98 | HG01626 930431 1.00000 1668861 0.99955 0.00113 0.00037 0.64204 0.01079 99 | HG03922 956588 1.00000 1716477 0.99952 0.00281 0.00102 0.64214 0.01051 100 | HG00158 930288 1.00000 1669006 0.99955 0.00091 0.00028 0.64210 0.01122 101 | HG01348 967324 1.00000 1640701 0.99948 0.00096 0.00030 0.62910 0.01229 102 | HG03490 982877 1.00000 1594462 0.99954 0.00174 0.00063 0.61865 0.01154 103 | NA18555 1054783 1.00000 1539879 0.99947 0.00110 0.00037 0.59348 0.01184 104 | HG00150 941622 1.00000 1671278 0.99956 0.00089 0.00028 0.63963 0.01076 105 | HG04185 916036 1.00000 1626243 0.99950 0.00206 0.00069 0.63968 0.01401 106 | HG02142 1009009 1.00000 1596565 0.99951 0.00080 0.00025 0.61275 0.01236 107 | NA19324 959319 1.00000 1584759 0.99954 0.00080 0.00027 0.62292 0.01249 108 | HG00428 1023188 1.00000 1510146 0.99943 0.00132 0.00042 0.59611 0.01352 109 | HG01356 910820 1.00000 1725236 0.99959 0.00099 0.00030 0.65448 0.01154 110 | NA18987 1057998 1.00000 1427292 0.99954 0.00082 0.00026 0.57430 0.01350 111 | HG01260 922767 1.00000 1752579 0.99958 0.00088 0.00027 0.65508 0.01050 112 | HG01524 906417 1.00000 1608049 0.99949 0.00085 0.00027 0.63952 0.01298 113 | NA12287 936303 1.00000 1635273 0.99954 0.00095 0.00030 0.63590 0.01137 114 | HG03805 940069 1.00000 1711883 0.99955 0.00219 0.00080 0.64552 0.01089 115 | NA11831 925124 1.00000 1636702 0.99955 0.00102 0.00032 0.63888 0.01066 116 | HG02549 969122 1.00000 1612020 0.99954 0.00083 0.00029 0.62454 0.01135 117 | HG01075 921625 1.00000 1694687 0.99955 0.00083 0.00026 0.64774 0.01134 118 | HG03212 994765 1.00000 1557862 0.99952 0.00088 0.00030 0.61030 0.01333 119 | HG03064 1003379 1.00000 1562247 0.99948 0.00156 0.00059 0.60891 0.01220 120 | NA20298 965317 1.00000 1632439 0.99953 0.00103 0.00034 0.62840 0.01197 121 | NA19440 975586 1.00000 1602350 0.99954 0.00073 0.00024 0.62156 0.01153 122 | NA21093 972659 1.00000 1683522 0.99956 0.00108 0.00034 0.63381 0.00955 123 | HG02069 987645 1.00000 1511195 0.99941 0.00081 0.00026 0.60476 0.01469 124 | HG02489 946495 1.00000 1662645 0.99952 0.00118 0.00042 0.63724 0.01200 125 | HG03696 1077934 1.00000 1425624 0.99951 0.00099 0.00033 0.56944 0.01253 126 | NA19725 903493 1.00000 1650459 0.99952 0.00089 0.00029 0.64624 0.01352 127 | NA21144 920014 1.00000 1586892 0.99951 0.00098 0.00031 0.63301 0.01400 128 | HG02078 1021932 1.00000 1499249 0.99948 0.00075 0.00024 0.59466 0.01481 129 | HG00451 1053237 1.00000 1534403 0.99948 0.00133 0.00044 0.59297 0.01159 130 | HG01682 916083 1.00000 1616290 0.99955 0.00087 0.00027 0.63825 0.01146 131 | HG00182 920218 1.00000 1655207 0.99956 0.00093 0.00029 0.64269 0.01141 132 | NA18990 1054139 1.00000 1559241 0.99945 0.00100 0.00033 0.59664 0.01265 133 | NA18532 1024290 1.00000 1506343 0.99944 0.00085 0.00027 0.59524 0.01389 134 | NA20846 937543 1.00000 1643538 0.99952 0.00092 0.00029 0.63676 0.01206 135 | NA11894 926440 1.00000 1639352 0.99955 0.00091 0.00029 0.63893 0.01195 136 | HG03061 991727 1.00000 1576805 0.99930 0.00094 0.00032 0.61389 0.01310 137 | NA18538 1049787 1.00000 1585838 0.99949 0.00105 0.00034 0.60169 0.01027 138 | HG00338 929031 1.00000 1647952 0.99952 0.00129 0.00040 0.63949 0.01114 139 | HG03874 946728 1.00000 1685303 0.99948 0.00153 0.00053 0.64031 0.01176 140 | NA12878 930375 1.00000 1622388 0.99952 0.00094 0.00030 0.63554 0.01162 141 | HG00319 929907 1.00000 1659486 0.99953 0.00088 0.00027 0.64088 0.01166 142 | HG02040 1032218 1.00000 1576113 0.99945 0.00080 0.00025 0.60426 0.01297 143 | NA19189 964973 1.00000 1502377 0.99949 0.00084 0.00028 0.60890 0.01482 144 | HG01095 887059 1.00000 1667588 0.99955 0.00095 0.00029 0.65277 0.01325 145 | HG02079 1026034 1.00000 1518668 0.99956 0.00081 0.00026 0.59680 0.01293 146 | NA19704 930500 1.00000 1661247 0.99959 0.00083 0.00027 0.64098 0.01306 147 | HG01465 923930 1.00000 1621532 0.99954 0.00086 0.00027 0.63703 0.01279 148 | HG00320 966224 1.00000 1624157 0.99955 0.00121 0.00039 0.62700 0.01048 149 | NA18647 1037320 1.00000 1568870 0.99948 0.00091 0.00029 0.60198 0.01263 150 | NA20753 915606 1.00000 1645233 0.99948 0.00129 0.00039 0.64246 0.01302 151 | HG03060 985958 1.00000 1574052 0.99953 0.00114 0.00040 0.61486 0.01204 152 | HG03616 936563 1.00000 1687692 0.99954 0.00113 0.00037 0.64311 0.01200 153 | HG00653 1067816 1.00000 1583515 0.99961 0.00091 0.00030 0.59725 0.00936 154 | NA20318 891193 1.00000 1757433 0.99950 0.00099 0.00031 0.66353 0.01174 155 | HG00146 942677 1.00000 1673602 0.99957 0.00093 0.00030 0.63969 0.00955 156 | HG00881 1047890 1.00000 1559634 0.99950 0.00097 0.00031 0.59813 0.01209 157 | HG03121 999456 1.00000 1558246 0.99951 0.00088 0.00030 0.60924 0.01248 158 | NA19025 988587 1.00000 1594192 0.99957 0.00078 0.00026 0.61724 0.01163 159 | NA20785 919669 1.00000 1687857 0.99956 0.00091 0.00028 0.64730 0.00996 160 | NA19454 978718 1.00000 1606942 0.99950 0.00080 0.00026 0.62148 0.01271 161 | NA20906 961364 1.00000 1714793 0.99952 0.00089 0.00028 0.64077 0.01020 162 | NA19385 959714 1.00000 1598401 0.99957 0.00080 0.00026 0.62484 0.01230 163 | HG00607 1064814 1.00000 1554641 0.99952 0.00086 0.00028 0.59350 0.01137 164 | HG00128 954923 1.00000 1654344 0.99957 0.00104 0.00033 0.63403 0.00985 165 | HG00403 1022020 1.00000 1547418 0.99946 0.00084 0.00026 0.60224 0.01368 166 | NA19002 1050361 1.00000 1560289 0.99955 0.00091 0.00029 0.59766 0.01094 167 | NA12762 943938 1.00000 1641492 0.99950 0.00106 0.00034 0.63490 0.01101 168 | HG02922 958554 1.00000 1562111 0.99952 0.00087 0.00029 0.61972 0.01348 169 | NA18982 1017870 1.00000 1517778 0.99953 0.00101 0.00032 0.59858 0.01241 170 | HG02016 980216 1.00000 1544596 0.99947 0.00084 0.00027 0.61177 0.01465 171 | HG03773 997924 1.00000 1629268 0.99958 0.00211 0.00078 0.62016 0.00959 172 | HG02502 912658 1.00000 1636674 0.99951 0.00145 0.00053 0.64200 0.01317 173 | HG00376 943091 1.00000 1634040 0.99961 0.00090 0.00028 0.63405 0.01104 174 | HG01843 1034431 1.00000 1544298 0.99949 0.00096 0.00030 0.59886 0.01324 175 | NA19347 973358 1.00000 1607223 0.99952 0.00085 0.00028 0.62281 0.01233 176 | HG02285 1033623 1.00000 1503549 0.99950 0.00081 0.00026 0.59261 0.01287 177 | HG02557 955580 1.00000 1604769 0.99948 0.00122 0.00043 0.62678 0.01324 178 | HG04200 940836 1.00000 1683048 0.99949 0.00311 0.00112 0.64143 0.01135 179 | HG03706 942895 1.00000 1658410 0.99953 0.00136 0.00043 0.63753 0.01206 180 | NA19462 981938 1.00000 1606316 0.99910 0.00089 0.00030 0.62062 0.01695 181 | NA19771 926450 1.00000 1620531 0.99953 0.00084 0.00026 0.63626 0.01343 182 | HG01605 903393 1.00000 1613477 0.99948 0.00092 0.00029 0.64106 0.01289 183 | NA19007 1013744 1.00000 1522104 0.99953 0.00088 0.00028 0.60023 0.01339 184 | HG01845 1033669 1.00000 1536941 0.99957 0.00096 0.00030 0.59789 0.01197 185 | HG02700 911656 1.00000 1658000 0.99953 0.00123 0.00040 0.64522 0.01229 186 | HG01503 915757 1.00000 1618628 0.99954 0.00089 0.00028 0.63867 0.01195 187 | NA20530 926769 1.00000 1650285 0.99950 0.00161 0.00055 0.64038 0.01215 188 | NA20818 920301 1.00000 1656258 0.99954 0.00095 0.00030 0.64282 0.01174 189 | NA19141 948816 1.00000 1501632 0.99949 0.00100 0.00032 0.61280 0.01428 190 | NA19144 985814 1.00000 1586043 0.99949 0.00148 0.00055 0.61669 0.01264 191 | NA18876 961507 1.00000 1584751 0.99958 0.00079 0.00026 0.62238 0.01311 192 | HG04020 962523 1.00000 1677480 0.99937 0.00557 0.00215 0.63541 0.01167 193 | NA18534 1029508 1.00000 1511782 0.99947 0.00074 0.00024 0.59489 0.01374 194 | HG02643 965715 1.00000 1568250 0.99941 0.00233 0.00091 0.61889 0.01309 195 | HG01847 1037255 1.00000 1548522 0.99954 0.00095 0.00030 0.59886 0.01184 196 | HG02085 1022969 1.00000 1527489 0.99948 0.00089 0.00029 0.59891 0.01412 197 | HG02407 1030745 1.00000 1542081 0.99952 0.00092 0.00029 0.59937 0.01215 198 | HG01807 1032011 1.00000 1525775 0.99951 0.00096 0.00031 0.59652 0.01255 199 | HG02164 1052006 1.00000 1559422 0.99941 0.00396 0.00152 0.59715 0.01096 200 | HG03619 933383 1.00000 1606912 0.99954 0.00183 0.00060 0.63257 0.01200 201 | NA07347 938276 1.00000 1628962 0.99948 0.00153 0.00049 0.63452 0.01316 202 | NA18933 959010 1.00000 1540219 0.99953 0.00087 0.00028 0.61628 0.01295 203 | NA18520 983477 1.00000 1562455 0.99955 0.00096 0.00032 0.61371 0.01291 204 | HG02840 955721 1.00000 1545478 0.99953 0.00126 0.00041 0.61789 0.01278 205 | HG01176 938593 1.00000 1739511 0.99957 0.00106 0.00033 0.64953 0.01007 206 | HG01894 974826 1.00000 1663870 0.99963 0.00091 0.00030 0.63057 0.00933 207 | NA20863 941468 1.00000 1695538 0.99958 0.00090 0.00028 0.64298 0.01188 208 | HG01187 894416 1.00000 1720110 0.99956 0.00125 0.00038 0.65791 0.01143 209 | NA18964 1047767 1.00000 1522476 0.99950 0.00090 0.00029 0.59235 0.01280 210 | HG03237 935131 1.00000 1656327 0.99953 0.00136 0.00046 0.63915 0.01139 211 | HG01537 908480 1.00000 1619597 0.99955 0.00134 0.00046 0.64064 0.01254 212 | HG00701 1052235 1.00000 1587445 0.99950 0.00099 0.00032 0.60138 0.01092 213 | NA20342 881852 1.00000 1770212 0.99961 0.00089 0.00028 0.66748 0.01146 214 | HG02450 950352 1.00000 1636369 0.99948 0.00208 0.00079 0.63260 0.01236 215 | HG00274 926409 1.00000 1621052 0.99955 0.00083 0.00026 0.63634 0.01170 216 | HG01253 905868 1.00000 1725736 0.99956 0.00083 0.00026 0.65577 0.01211 217 | NA18632 1039412 1.00000 1543968 0.99942 0.00116 0.00041 0.59765 0.01370 218 | HG03866 942085 1.00000 1654397 0.99953 0.00094 0.00029 0.63717 0.01270 219 | HG03740 1005428 1.00000 1521448 0.99948 0.00088 0.00029 0.60211 0.01278 220 | HG03012 931853 1.00000 1684520 0.99950 0.00188 0.00063 0.64384 0.01342 221 | HG00189 895135 1.00000 1587074 0.99952 0.00084 0.00026 0.63938 0.01349 222 | NA12873 927057 1.00000 1657388 0.99956 0.00136 0.00043 0.64129 0.00938 223 | HG00277 924554 1.00000 1623914 0.99950 0.00086 0.00027 0.63721 0.01254 224 | HG00157 906686 1.00000 1620764 0.99944 0.00081 0.00025 0.64126 0.01376 225 | NA19031 993691 1.00000 1653316 0.99957 0.00118 0.00039 0.62460 0.00929 226 | HG03772 963464 1.00000 1613468 0.99949 0.00101 0.00033 0.62612 0.01289 227 | NA19317 979146 1.00000 1616222 0.99952 0.00079 0.00026 0.62273 0.01216 228 | HG03077 983892 1.00000 1545988 0.99960 0.00121 0.00041 0.61109 0.01236 229 | NA19113 988121 1.00000 1541700 0.99953 0.00084 0.00028 0.60941 0.01256 230 | HG01500 904003 1.00000 1635393 0.99952 0.00089 0.00027 0.64401 0.01241 231 | HG03363 979800 1.00000 1530099 0.99951 0.00146 0.00053 0.60963 0.01373 232 | HG03837 1062523 1.00000 1445182 0.99939 0.00202 0.00078 0.57630 0.01282 233 | HG00978 1057918 1.00000 1563144 0.99949 0.00185 0.00066 0.59638 0.01105 234 | HG02017 1002610 1.00000 1512210 0.99945 0.00092 0.00031 0.60132 0.01398 235 | NA19074 1058270 1.00000 1519862 0.99951 0.00127 0.00040 0.58952 0.01196 236 | NA19755 966594 1.00000 1568418 0.99952 0.00077 0.00025 0.61870 0.01351 237 | NA12414 929799 1.00000 1583430 0.99920 0.00517 0.00201 0.63004 0.01377 238 | HG03382 964303 1.00000 1558449 0.99954 0.00131 0.00044 0.61776 0.01270 239 | NA20799 916298 1.00000 1624153 0.99959 0.00088 0.00027 0.63932 0.01192 240 | HG00113 899112 1.00000 1586910 0.99947 0.00080 0.00025 0.63833 0.01377 241 | NA20890 935853 1.00000 1648806 0.99954 0.00101 0.00032 0.63792 0.01188 242 | HG02433 937238 1.00000 1658767 0.99953 0.00112 0.00037 0.63897 0.01215 243 | HG00255 938796 1.00000 1635434 0.99951 0.00088 0.00027 0.63531 0.01191 244 | NA21102 966272 1.00000 1693225 0.99960 0.00112 0.00035 0.63667 0.00986 245 | HG03643 941147 1.00000 1660676 0.99957 0.00084 0.00026 0.63827 0.01181 246 | HG01269 922912 1.00000 1680476 0.99955 0.00088 0.00027 0.64550 0.01209 247 | HG03821 936870 1.00000 1681241 0.99948 0.00290 0.00103 0.64216 0.01209 248 | NA20868 958220 1.00000 1697373 0.99956 0.00092 0.00028 0.63917 0.01087 249 | HG02067 1034218 1.00000 1555644 0.99944 0.00101 0.00032 0.60067 0.01230 250 | NA18501 937220 1.00000 1510160 0.99949 0.00097 0.00032 0.61705 0.01483 251 | NA20787 939559 1.00000 1622109 0.99949 0.00095 0.00030 0.63322 0.01159 252 | HG03687 949934 1.00000 1565099 0.99948 0.00092 0.00030 0.62230 0.01421 253 | HG00235 946192 1.00000 1646464 0.99957 0.00090 0.00028 0.63505 0.01002 254 | NA18502 951383 1.00000 1519492 0.99949 0.00090 0.00030 0.61496 0.01396 255 | HG01435 941401 1.00000 1674476 0.99953 0.00086 0.00027 0.64012 0.01182 256 | HG01777 910240 1.00000 1658530 0.99951 0.00100 0.00030 0.64565 0.01218 257 | NA19092 996362 1.00000 1594176 0.99953 0.00092 0.00031 0.61538 0.01238 258 | NA19719 908048 1.00000 1723557 0.99958 0.00098 0.00031 0.65495 0.01099 259 | HG00101 929438 1.00000 1646291 0.99952 0.00102 0.00032 0.63916 0.01161 260 | NA20896 938129 1.00000 1645826 0.99953 0.00120 0.00036 0.63694 0.01272 261 | HG01868 1034792 1.00000 1531796 0.99952 0.00098 0.00031 0.59682 0.01241 262 | NA18567 1063608 1.00000 1548108 0.99951 0.00090 0.00029 0.59276 0.01220 263 | HG02445 941896 1.00000 1677372 0.99953 0.00141 0.00050 0.64040 0.01096 264 | HG04076 946911 1.00000 1682852 0.99943 0.00452 0.00168 0.63993 0.01208 265 | NA19089 1036633 1.00000 1544223 0.99948 0.00091 0.00029 0.59834 0.01269 266 | NA18939 1022411 1.00000 1507246 0.99950 0.00097 0.00030 0.59583 0.01368 267 | HG02649 954528 1.00000 1550315 0.99949 0.00103 0.00034 0.61893 0.01400 268 | HG02676 963876 1.00000 1579967 0.99949 0.00093 0.00031 0.62109 0.01283 269 | NA18985 1050020 1.00000 1514462 0.99947 0.00113 0.00035 0.59055 0.01306 270 | HG02367 1040506 1.00000 1516190 0.99949 0.00075 0.00024 0.59303 0.01278 271 | NA20808 937590 1.00000 1648337 0.99931 0.00596 0.00233 0.63743 0.01124 272 | NA21111 911757 1.00000 1616089 0.99951 0.00099 0.00030 0.63931 0.01370 273 | NA18543 1032304 1.00000 1547330 0.99950 0.00076 0.00024 0.59983 0.01285 274 | HG01851 1033225 1.00000 1554282 0.99957 0.00083 0.00026 0.60069 0.01221 275 | HG03304 967758 1.00000 1576584 0.99953 0.00118 0.00041 0.61964 0.01233 276 | HG03019 952930 1.00000 1609504 0.99948 0.00117 0.00038 0.62812 0.01297 277 | NA18558 1024628 1.00000 1512535 0.99943 0.00153 0.00052 0.59615 0.01313 278 | NA20828 924319 1.00000 1640917 0.99953 0.00083 0.00026 0.63967 0.01247 279 | NA21116 917656 1.00000 1656799 0.99953 0.00122 0.00038 0.64355 0.01253 280 | HG04023 1007406 1.00000 1590699 0.99953 0.00136 0.00043 0.61225 0.01150 281 | HG02697 932757 1.00000 1642337 0.99949 0.00120 0.00038 0.63778 0.01286 282 | NA18867 978676 1.00000 1557377 0.99957 0.00079 0.00026 0.61409 0.01154 283 | HG00620 1062223 1.00000 1542471 0.99952 0.00082 0.00026 0.59219 0.01151 284 | HG02570 981533 1.00000 1590484 0.99955 0.00102 0.00035 0.61838 0.01211 285 | HG01432 901814 1.00000 1575148 0.99953 0.00083 0.00026 0.63592 0.01330 286 | NA19062 1024363 1.00000 1515502 0.99947 0.00095 0.00030 0.59669 0.01331 287 | HG02398 1013895 1.00000 1487608 0.99952 0.00092 0.00029 0.59469 0.01383 288 | HG01271 917690 1.00000 1728248 0.99959 0.00092 0.00028 0.65317 0.01064 289 | HG02694 986774 1.00000 1517040 0.99947 0.00119 0.00040 0.60589 0.01264 290 | HG03091 986243 1.00000 1549611 0.99953 0.00112 0.00039 0.61108 0.01241 291 | HG03746 942053 1.00000 1682663 0.99948 0.00094 0.00029 0.64108 0.01259 292 | HG03607 934417 1.00000 1672420 0.99952 0.00202 0.00067 0.64155 0.01247 293 | HG01198 943208 1.00000 1637118 0.99956 0.00103 0.00033 0.63446 0.01137 294 | HG01344 962256 1.00000 1646720 0.99953 0.00107 0.00035 0.63117 0.01131 295 | NA18565 1070736 1.00000 1571914 0.99957 0.00122 0.00039 0.59482 0.00930 296 | NA20878 959686 1.00000 1677661 0.99955 0.00112 0.00035 0.63612 0.01112 297 | HG04131 947970 1.00000 1718127 0.99952 0.00242 0.00083 0.64444 0.01062 298 | NA18626 1046006 1.00000 1576433 0.99951 0.00095 0.00030 0.60113 0.01141 299 | NA19350 950322 1.00000 1583436 0.99954 0.00101 0.00033 0.62494 0.01266 300 | HG03049 943861 1.00000 1517775 0.99947 0.00099 0.00035 0.61657 0.01484 301 | HG01852 1047933 1.00000 1563937 0.99948 0.00084 0.00027 0.59878 0.01237 302 | NA20771 929087 1.00000 1669163 0.99952 0.00106 0.00033 0.64242 0.01104 303 | HG03139 1000814 1.00000 1580337 0.99956 0.00105 0.00036 0.61226 0.01079 304 | HG01366 909673 1.00000 1692939 0.99950 0.00077 0.00024 0.65048 0.01259 305 | HG03755 895174 1.00000 1620998 0.99939 0.00399 0.00149 0.64423 0.01316 306 | HG00742 922024 1.00000 1693739 0.99960 0.00108 0.00033 0.64751 0.01097 307 | HG01456 911770 1.00000 1698961 0.99955 0.00087 0.00027 0.65076 0.01297 308 | HG01989 925918 1.00000 1619448 0.99958 0.00078 0.00025 0.63623 0.01274 309 | HG03849 941805 1.00000 1675341 0.99955 0.00106 0.00035 0.64014 0.01194 310 | HG02820 962635 1.00000 1569052 0.99951 0.00102 0.00033 0.61977 0.01337 311 | NA19063 1061748 1.00000 1571764 0.99952 0.00109 0.00034 0.59683 0.01032 312 | HG03974 932391 1.00000 1657627 0.99951 0.00109 0.00035 0.64001 0.01240 313 | NA12044 923370 1.00000 1636033 0.99954 0.00093 0.00030 0.63922 0.01144 314 | NA19041 921549 1.00000 1531992 0.99950 0.00077 0.00025 0.62440 0.01456 315 | HG02049 1026245 1.00000 1572316 0.99946 0.00083 0.00026 0.60507 0.01283 316 | NA20850 955643 1.00000 1694473 0.99957 0.00096 0.00030 0.63940 0.00890 317 | NA18947 1036194 1.00000 1529085 0.99951 0.00087 0.00028 0.59607 0.01204 318 | HG02009 906944 1.00000 1619017 0.99951 0.00085 0.00029 0.64095 0.01438 319 | HG02775 926294 1.00000 1624089 0.99954 0.00145 0.00046 0.63680 0.01237 320 | NA20872 912547 1.00000 1608271 0.99934 0.00337 0.00129 0.63800 0.01353 321 | NA19206 984830 1.00000 1581058 0.99957 0.00085 0.00028 0.61618 0.01125 322 | HG02778 946515 1.00000 1635889 0.99950 0.00113 0.00036 0.63348 0.01512 323 | NA20811 936132 1.00000 1651956 0.99956 0.00084 0.00026 0.63829 0.01134 324 | NA11994 922633 1.00000 1645590 0.99953 0.00093 0.00029 0.64075 0.01175 325 | HG00361 920239 1.00000 1620185 0.99959 0.00088 0.00027 0.63776 0.01171 326 | NA18545 1054900 1.00000 1546745 0.99947 0.00092 0.00029 0.59453 0.01172 327 | HG02275 1099157 1.00000 1382498 0.99941 0.00095 0.00032 0.55709 0.01338 328 | NA19783 972148 1.00000 1544785 0.99941 0.00271 0.00101 0.61376 0.01369 329 | NA19087 1040263 1.00000 1534323 0.99946 0.00107 0.00037 0.59595 0.01305 330 | HG01028 1073818 1.00000 1573653 0.99954 0.00104 0.00035 0.59440 0.00961 331 | HG01924 970728 1.00000 1626730 0.99954 0.00106 0.00033 0.62628 0.01174 332 | HG00364 936110 1.00000 1613522 0.99956 0.00109 0.00034 0.63285 0.01124 333 | HG00737 916512 1.00000 1684075 0.99953 0.00090 0.00028 0.64757 0.01275 334 | HG03864 953363 1.00000 1674949 0.99953 0.00095 0.00029 0.63727 0.01163 335 | HG01531 939019 1.00000 1579309 0.99953 0.00100 0.00033 0.62713 0.01295 336 | HG04014 957116 1.00000 1681330 0.99894 0.00124 0.00040 0.63724 0.02745 337 | NA19005 1039970 1.00000 1560257 0.99944 0.00091 0.00029 0.60005 0.01315 338 | NA19098 1003767 1.00000 1594511 0.99947 0.00090 0.00030 0.61368 0.01196 339 | HG02339 961349 1.00000 1516745 0.99948 0.00090 0.00030 0.61206 0.01357 340 | HG02298 984257 1.00000 1562425 0.99953 0.00078 0.00025 0.61351 0.01286 341 | HG01766 921211 1.00000 1638818 0.99955 0.00092 0.00028 0.64016 0.01095 342 | HG03836 990622 1.00000 1600452 0.99955 0.00137 0.00047 0.61768 0.01184 343 | NA20757 923004 1.00000 1639920 0.99957 0.00107 0.00033 0.63986 0.01147 344 | HG03999 952186 1.00000 1701340 0.99951 0.00182 0.00062 0.64116 0.01157 345 | NA19239 967516 1.00000 1554193 0.99951 0.00087 0.00029 0.61633 0.01351 346 | NA19908 956889 1.00000 1664040 0.99930 0.00669 0.00274 0.63490 0.01141 347 | NA20356 933829 1.00000 1660064 0.99952 0.00088 0.00028 0.63999 0.01250 348 | HG01607 918377 1.00000 1616338 0.99947 0.00091 0.00029 0.63768 0.01357 349 | HG01893 920579 1.00000 1632619 0.99953 0.00109 0.00036 0.63944 0.01320 350 | HG02221 920232 1.00000 1606236 0.99949 0.00109 0.00037 0.63576 0.01259 351 | HG03445 969615 1.00000 1570134 0.99948 0.00152 0.00056 0.61822 0.01336 352 | HG03469 979464 1.00000 1558587 0.99950 0.00174 0.00061 0.61409 0.01284 353 | HG03897 957921 1.00000 1693870 0.99948 0.00141 0.00046 0.63876 0.01110 354 | NA20760 927282 1.00000 1645237 0.99948 0.00320 0.00115 0.63954 0.01185 355 | NA19452 979544 1.00000 1624073 0.99951 0.00078 0.00026 0.62378 0.01190 356 | HG03024 970685 1.00000 1533730 0.99933 0.00391 0.00155 0.61241 0.01388 357 | NA20800 934525 1.00000 1643653 0.99958 0.00091 0.00028 0.63753 0.01108 358 | HG02884 963950 1.00000 1555942 0.99932 0.00431 0.00172 0.61746 0.01369 359 | NA12004 923004 1.00000 1658268 0.99956 0.00088 0.00027 0.64242 0.01139 360 | HG04039 944188 1.00000 1689599 0.99954 0.00171 0.00059 0.64151 0.01150 361 | HG00732 912937 1.00000 1662287 0.99955 0.00098 0.00030 0.64549 0.01246 362 | NA12155 932056 1.00000 1622184 0.99953 0.00129 0.00043 0.63509 0.01177 363 | HG02220 916354 1.00000 1644436 0.99954 0.00084 0.00026 0.64216 0.01208 364 | NA18536 1014811 1.00000 1476577 0.99947 0.00106 0.00033 0.59267 0.01370 365 | NA20767 907972 1.00000 1640094 0.99955 0.00104 0.00032 0.64366 0.01183 366 | HG01935 1025637 1.00000 1548558 0.99949 0.00084 0.00027 0.60157 0.01202 367 | NA20276 914343 1.00000 1669230 0.99954 0.00090 0.00029 0.64609 0.01250 368 | HG02089 965052 1.00000 1554082 0.99953 0.00082 0.00026 0.61691 0.01300 369 | NA21097 935515 1.00000 1613175 0.99951 0.00106 0.00032 0.63294 0.01278 370 | HG03774 958227 1.00000 1658652 0.99953 0.00113 0.00037 0.63383 0.01117 371 | HG02146 1067963 1.00000 1358935 0.99947 0.00091 0.00030 0.55995 0.01348 372 | HG02188 1047958 1.00000 1518823 0.99948 0.00078 0.00025 0.59172 0.01285 373 | HG03685 928953 1.00000 1646141 0.99948 0.00183 0.00063 0.63925 0.01243 374 | HG03196 950311 1.00000 1541826 0.99948 0.00106 0.00036 0.61868 0.01336 375 | HG02032 1037333 1.00000 1537707 0.99954 0.00094 0.00029 0.59716 0.01252 376 | HG03571 996039 1.00000 1598568 0.99950 0.00100 0.00034 0.61611 0.01110 377 | HG02082 1017696 1.00000 1505159 0.99945 0.00109 0.00037 0.59661 0.01437 378 | HG01063 862539 1.00000 1786424 0.99959 0.00086 0.00026 0.67439 0.01145 379 | HG02968 981555 1.00000 1551271 0.99954 0.00070 0.00023 0.61247 0.01323 380 | NA18525 1040302 1.00000 1526733 0.99944 0.00098 0.00030 0.59475 0.01340 381 | NA19332 973312 1.00000 1610425 0.99956 0.00089 0.00030 0.62329 0.01172 382 | NA06985 931567 1.00000 1647170 0.99956 0.00111 0.00034 0.63875 0.01136 383 | HG02522 1021638 1.00000 1490134 0.99944 0.00086 0.00028 0.59326 0.01367 384 | HG01799 1012402 1.00000 1471591 0.99948 0.00095 0.00030 0.59243 0.01401 385 | HG04107 957074 1.00000 1610606 0.99951 0.00176 0.00060 0.62726 0.01323 386 | HG04219 934577 1.00000 1687932 0.99955 0.00159 0.00053 0.64363 0.01157 387 | HG03446 970596 1.00000 1551309 0.99948 0.00203 0.00076 0.61513 0.01321 388 | HG03989 961398 1.00000 1662600 0.99948 0.00245 0.00087 0.63361 0.01093 389 | NA18962 1042866 1.00000 1570958 0.99954 0.00123 0.00040 0.60102 0.01133 390 | NA21109 948263 1.00000 1657594 0.99954 0.00097 0.00030 0.63610 0.01130 391 | HG00339 948737 1.00000 1661762 0.99956 0.00121 0.00039 0.63657 0.00914 392 | HG04180 963518 1.00000 1684394 0.99951 0.00185 0.00066 0.63612 0.01178 393 | HG03753 937489 1.00000 1682639 0.99948 0.00095 0.00030 0.64220 0.01248 394 | HG01105 946520 1.00000 1699454 0.99959 0.00110 0.00034 0.64228 0.00952 395 | HG03009 918613 1.00000 1658362 0.99952 0.00239 0.00087 0.64353 0.01260 396 | HG03928 913543 1.00000 1653845 0.99938 0.00441 0.00167 0.64417 0.01302 397 | HG03063 978664 1.00000 1566786 0.99954 0.00090 0.00031 0.61552 0.01255 398 | HG00112 932318 1.00000 1621636 0.99952 0.00094 0.00030 0.63495 0.01165 399 | HG01870 1034084 1.00000 1503174 0.99950 0.00092 0.00029 0.59244 0.01343 400 | HG02881 1002860 1.00000 1498877 0.99958 0.00119 0.00040 0.59913 0.01246 401 | NA18978 1049632 1.00000 1538495 0.99947 0.00129 0.00045 0.59444 0.01272 402 | HG01528 923601 1.00000 1602989 0.99944 0.00089 0.00028 0.63445 0.01306 403 | NA18553 1040597 1.00000 1581693 0.99952 0.00093 0.00030 0.60317 0.01141 404 | HG03812 918393 1.00000 1679515 0.99943 0.00321 0.00118 0.64649 0.01295 405 | HG03313 988399 1.00000 1565055 0.99952 0.00140 0.00049 0.61292 0.01272 406 | HG03611 959528 1.00000 1726341 0.99972 0.00215 0.00070 0.64275 0.00732 407 | HG01363 907304 1.00000 1688035 0.99952 0.00089 0.00027 0.65041 0.01278 408 | HG02283 923113 1.00000 1693830 0.99953 0.00086 0.00028 0.64726 0.01235 409 | NA20511 911153 1.00000 1611046 0.99953 0.00135 0.00041 0.63875 0.01252 410 | HG03488 921017 1.00000 1704490 0.99952 0.00134 0.00044 0.64920 0.01217 411 | HG01031 1041647 1.00000 1563393 0.99952 0.00111 0.00035 0.60014 0.01246 412 | NA20529 910687 1.00000 1605718 0.99959 0.00134 0.00041 0.63810 0.01278 413 | NA20819 926891 1.00000 1605777 0.99953 0.00079 0.00025 0.63403 0.01264 414 | HG01108 900937 1.00000 1714224 0.99959 0.00123 0.00038 0.65549 0.01106 415 | NA18641 1051126 1.00000 1543539 0.99933 0.00446 0.00175 0.59489 0.01246 416 | NA19003 1026123 1.00000 1485771 0.99948 0.00084 0.00027 0.59149 0.01318 417 | HG03132 979222 1.00000 1558381 0.99952 0.00115 0.00041 0.61412 0.01290 418 | NA18566 1025152 1.00000 1528505 0.99947 0.00120 0.00039 0.59856 0.01340 419 | HG01378 950282 1.00000 1688872 0.99956 0.00122 0.00038 0.63993 0.00956 420 | HG03851 943918 1.00000 1682777 0.99952 0.00099 0.00031 0.64064 0.01241 421 | NA20752 907667 1.00000 1644695 0.99957 0.00088 0.00027 0.64438 0.01225 422 | HG00360 931269 1.00000 1634222 0.99957 0.00091 0.00028 0.63700 0.01179 423 | HG01354 938553 1.00000 1666630 0.99953 0.00113 0.00035 0.63974 0.01166 424 | HG00533 1052148 1.00000 1540157 0.99945 0.00085 0.00027 0.59413 0.01302 425 | HG01593 953241 1.00000 1609340 0.99957 0.00087 0.00027 0.62802 0.01129 426 | HG04206 964937 1.00000 1670656 0.99955 0.00117 0.00036 0.63388 0.01031 427 | HG02322 906592 1.00000 1596720 0.99952 0.00088 0.00029 0.63784 0.01748 428 | HG03690 1015541 1.00000 1512994 0.99940 0.00202 0.00076 0.59837 0.01335 429 | HG01810 1030356 1.00000 1492594 0.99942 0.00105 0.00033 0.59161 0.01402 430 | NA19316 982573 1.00000 1618713 0.99952 0.00167 0.00062 0.62227 0.01144 431 | HG04094 936676 1.00000 1628787 0.99936 0.00338 0.00125 0.63489 0.01342 432 | HG03163 1001112 1.00000 1535458 0.99952 0.00077 0.00026 0.60533 0.01202 433 | NA18508 1004164 1.00000 1625374 0.99959 0.00117 0.00041 0.61812 0.00880 434 | HG00445 1049511 1.00000 1571351 0.99953 0.00109 0.00035 0.59956 0.01071 435 | HG02442 965483 1.00000 1562860 0.99950 0.00088 0.00029 0.61814 0.01298 436 | HG02355 1020348 1.00000 1511656 0.99950 0.00099 0.00032 0.59702 0.01339 437 | HG04225 953687 1.00000 1710973 0.99948 0.00306 0.00112 0.64210 0.01022 438 | NA18546 1018615 1.00000 1556977 0.99950 0.00092 0.00029 0.60451 0.01267 439 | HG03717 971428 1.00000 1661627 0.99940 0.00469 0.00180 0.63106 0.01136 440 | NA18628 1031479 1.00000 1538579 0.99946 0.00086 0.00027 0.59866 0.01339 441 | NA18858 988423 1.00000 1598417 0.99952 0.00078 0.00026 0.61790 0.01193 442 | HG00611 1057975 1.00000 1546825 0.99952 0.00100 0.00031 0.59384 0.01195 443 | HG02395 1032228 1.00000 1550945 0.99958 0.00103 0.00034 0.60040 0.01192 444 | NA18531 1025483 1.00000 1498378 0.99947 0.00077 0.00025 0.59368 0.01350 445 | HG03653 917176 1.00000 1650926 0.99953 0.00098 0.00030 0.64286 0.01294 446 | NA20521 924439 1.00000 1661132 0.99957 0.00114 0.00037 0.64246 0.01116 447 | HG02461 979922 1.00000 1590295 0.99946 0.00366 0.00148 0.61874 0.01122 448 | HG03391 980860 1.00000 1578388 0.99949 0.00180 0.00068 0.61674 0.01269 449 | HG04001 965693 1.00000 1687852 0.99956 0.00113 0.00035 0.63607 0.00953 450 | HG02851 934592 1.00000 1559086 0.99946 0.00085 0.00029 0.62522 0.01435 451 | HG01468 987373 1.00000 1542696 0.99950 0.00114 0.00035 0.60974 0.01285 452 | HG03240 972334 1.00000 1556436 0.99942 0.00255 0.00097 0.61549 0.01314 453 | NA19901 950519 1.00000 1639154 0.99954 0.00084 0.00027 0.63296 0.01185 454 | HG03432 993524 1.00000 1591391 0.99951 0.00095 0.00032 0.61565 0.01147 455 | HG03419 987661 1.00000 1571499 0.99954 0.00165 0.00058 0.61407 0.01252 456 | NA19197 983204 1.00000 1570835 0.99950 0.00072 0.00024 0.61504 0.01324 457 | HG03907 972730 1.00000 1647918 0.99953 0.00173 0.00060 0.62882 0.01156 458 | NA19776 913019 1.00000 1701193 0.99950 0.00076 0.00024 0.65075 0.01321 459 | HG00699 1051910 1.00000 1564573 0.99947 0.00083 0.00027 0.59797 0.01228 460 | HG02029 1026592 1.00000 1556822 0.99951 0.00137 0.00048 0.60262 0.01252 461 | HG02090 927703 1.00000 1665651 0.99953 0.00092 0.00030 0.64228 0.01382 462 | NA20851 927231 1.00000 1653155 0.99953 0.00084 0.00026 0.64066 0.01210 463 | HG03484 949911 1.00000 1530067 0.99947 0.00096 0.00031 0.61697 0.01349 464 | NA18603 1052002 1.00000 1566734 0.99945 0.00093 0.00030 0.59828 0.01242 465 | NA19065 1037442 1.00000 1526768 0.99949 0.00092 0.00030 0.59541 0.01334 466 | NA19395 969481 1.00000 1629466 0.99955 0.00083 0.00027 0.62697 0.01144 467 | HG00123 911632 1.00000 1635745 0.99955 0.00085 0.00026 0.64213 0.01236 468 | HG01589 968382 1.00000 1590943 0.99949 0.00100 0.00032 0.62163 0.01184 469 | NA21110 978170 1.00000 1698905 0.99957 0.00110 0.00034 0.63461 0.00941 470 | NA19657 917601 1.00000 1595081 0.99956 0.00075 0.00024 0.63481 0.01339 471 | HG01747 930580 1.00000 1637294 0.99955 0.00089 0.00028 0.63761 0.01124 472 | HG03944 964986 1.00000 1614895 0.99948 0.00237 0.00085 0.62596 0.01281 473 | NA12843 889385 1.00000 1601490 0.99955 0.00095 0.00029 0.64294 0.01281 474 | HG03352 967130 1.00000 1534422 0.99947 0.00110 0.00038 0.61339 0.01399 475 | NA19066 1018512 1.00000 1519420 0.99948 0.00090 0.00028 0.59868 0.01375 476 | HG02050 1058567 1.00000 1562910 0.99953 0.00097 0.00030 0.59619 0.01123 477 | HG01281 905981 1.00000 1705473 0.99957 0.00095 0.00029 0.65307 0.01101 478 | HG02238 921861 1.00000 1632981 0.99952 0.00086 0.00028 0.63917 0.01196 479 | HG01608 907887 1.00000 1601063 0.99949 0.00086 0.00027 0.63814 0.01313 480 | HG02020 1020196 1.00000 1521614 0.99944 0.00079 0.00025 0.59863 0.01348 481 | HG00325 920457 1.00000 1566252 0.99947 0.00088 0.00027 0.62985 0.01314 482 | HG00625 1048117 1.00000 1557010 0.99949 0.00093 0.00029 0.59767 0.01215 483 | HG03259 1102993 1.00000 1404416 0.99942 0.00145 0.00056 0.56011 0.01098 484 | NA18627 1028251 1.00000 1506818 0.99949 0.00101 0.00031 0.59439 0.01283 485 | NA19236 989688 1.00000 1576850 0.99949 0.00081 0.00027 0.61439 0.01244 486 | HG02072 1027445 1.00000 1561127 0.99955 0.00089 0.00029 0.60308 0.01226 487 | HG03872 929546 1.00000 1672330 0.99951 0.00101 0.00033 0.64274 0.01240 488 | NA20813 933847 1.00000 1648585 0.99951 0.00093 0.00029 0.63838 0.01181 489 | HG01612 913849 1.00000 1636476 0.99952 0.00109 0.00034 0.64167 0.01234 490 | HG03787 923107 1.00000 1658322 0.99948 0.00184 0.00066 0.64240 0.01264 491 | HG02012 973301 1.00000 1651808 0.99956 0.00095 0.00032 0.62923 0.01005 492 | NA18550 1013268 1.00000 1530127 0.99944 0.00088 0.00028 0.60161 0.01357 493 | HG01497 933456 1.00000 1641454 0.99952 0.00091 0.00028 0.63748 0.01224 494 | HG03478 992038 1.00000 1592449 0.99948 0.00229 0.00088 0.61616 0.01179 495 | HG01700 915942 1.00000 1580883 0.99953 0.00092 0.00028 0.63316 0.01278 496 | HG01060 919931 1.00000 1688774 0.99957 0.00134 0.00045 0.64736 0.01089 497 | HG00100 926405 1.00000 1605996 0.99953 0.00094 0.00029 0.63418 0.01277 498 | HG03730 937011 1.00000 1630461 0.99954 0.00111 0.00038 0.63505 0.01273 499 | HG03084 969772 1.00000 1569118 0.99950 0.00080 0.00027 0.61803 0.01339 500 | NA12058 925545 1.00000 1628181 0.99957 0.00114 0.00035 0.63757 0.01217 501 | HG00233 942826 1.00000 1678677 0.99957 0.00111 0.00035 0.64035 0.00979 502 | HG03760 948832 1.00000 1678540 0.99951 0.00090 0.00029 0.63887 0.01194 503 | HG00372 927540 1.00000 1608807 0.99958 0.00084 0.00027 0.63430 0.01211 504 | HG01527 919913 1.00000 1649121 0.99950 0.00085 0.00027 0.64192 0.01186 505 | HG03679 940143 1.00000 1651611 0.99954 0.00095 0.00030 0.63726 0.01250 506 | HG03885 941038 1.00000 1629016 0.99955 0.00099 0.00031 0.63385 0.01249 507 | HG04210 950714 1.00000 1693349 0.99952 0.00375 0.00137 0.64043 0.01079 508 | HG00650 1058059 1.00000 1568123 0.99954 0.00088 0.00028 0.59711 0.01071 509 | NA19056 1042034 1.00000 1553858 0.99955 0.00088 0.00027 0.59858 0.01175 510 | NA20346 927284 1.00000 1688064 0.99954 0.00091 0.00028 0.64545 0.01272 511 | HG01956 952170 1.00000 1629425 0.99954 0.00086 0.00029 0.63117 0.01230 512 | HG02314 956480 1.00000 1614132 0.99954 0.00083 0.00028 0.62792 0.01242 513 | HG01510 892253 1.00000 1615872 0.99949 0.00097 0.00030 0.64425 0.01344 514 | HG03157 969568 1.00000 1609833 0.99947 0.00099 0.00033 0.62411 0.01241 515 | NA11832 932109 1.00000 1618647 0.99952 0.00105 0.00035 0.63458 0.01190 516 | NA19096 993710 1.00000 1572289 0.99957 0.00086 0.00028 0.61274 0.01224 517 | HG01188 896555 1.00000 1724523 0.99952 0.00085 0.00026 0.65794 0.01210 518 | HG01812 1036885 1.00000 1517982 0.99947 0.00092 0.00029 0.59415 0.01271 519 | HG00264 927489 1.00000 1630221 0.99952 0.00106 0.00034 0.63738 0.01149 520 | NA12272 935578 1.00000 1625820 0.99955 0.00115 0.00038 0.63474 0.01199 521 | HG01164 909834 1.00000 1674236 0.99952 0.00107 0.00032 0.64791 0.01190 522 | HG00125 902094 1.00000 1572593 0.99951 0.00104 0.00032 0.63547 0.01324 523 | HG03736 901475 1.00000 1623309 0.99953 0.00095 0.00029 0.64295 0.01375 524 | NA20900 912356 1.00000 1662988 0.99951 0.00085 0.00027 0.64573 0.01322 525 | NA18881 1017522 1.00000 1607849 0.99960 0.00110 0.00036 0.61243 0.00887 526 | HG03127 942176 1.00000 1520037 0.99943 0.00291 0.00113 0.61735 0.01373 527 | HG00119 945308 1.00000 1625783 0.99955 0.00128 0.00042 0.63233 0.01110 528 | HG02734 1014146 1.00000 1442490 0.99945 0.00088 0.00029 0.58718 0.01407 529 | HG01086 905897 1.00000 1683632 0.99954 0.00085 0.00026 0.65017 0.01284 530 | HG03016 946526 1.00000 1673717 0.99955 0.00099 0.00031 0.63876 0.01164 531 | HG03117 993103 1.00000 1617137 0.99955 0.00151 0.00055 0.61954 0.01052 532 | HG04059 942688 1.00000 1667669 0.99941 0.00428 0.00160 0.63887 0.01284 533 | NA18613 1042411 1.00000 1531159 0.99952 0.00092 0.00029 0.59496 0.01236 534 | HG03868 954637 1.00000 1670954 0.99951 0.00230 0.00084 0.63641 0.01175 535 | NA19257 991979 1.00000 1603148 0.99955 0.00114 0.00039 0.61775 0.01219 536 | NA18562 1045397 1.00000 1584937 0.99952 0.00095 0.00030 0.60256 0.01145 537 | NA20294 934010 1.00000 1666529 0.99955 0.00093 0.00030 0.64084 0.01189 538 | HG01190 897776 1.00000 1731838 0.99958 0.00092 0.00028 0.65859 0.01106 539 | HG01806 1035372 1.00000 1514895 0.99952 0.00087 0.00028 0.59401 0.01272 540 | HG02493 923130 1.00000 1676424 0.99956 0.00085 0.00027 0.64489 0.01184 541 | NA21089 939421 1.00000 1619939 0.99948 0.00094 0.00029 0.63295 0.01335 542 | NA19982 936536 1.00000 1637922 0.99952 0.00097 0.00031 0.63622 0.01241 543 | HG01083 915601 1.00000 1739777 0.99958 0.00102 0.00032 0.65519 0.01009 544 | NA18561 1011985 1.00000 1540109 0.99952 0.00133 0.00044 0.60347 0.01291 545 | NA20889 940875 1.00000 1680054 0.99952 0.00087 0.00027 0.64101 0.01150 546 | HG00590 1032825 1.00000 1546657 0.99948 0.00081 0.00025 0.59960 0.01260 547 | NA18541 1049004 1.00000 1555384 0.99949 0.00120 0.00039 0.59722 0.01157 548 | HG01058 901455 1.00000 1722105 0.99959 0.00087 0.00027 0.65640 0.01111 549 | HG02061 1047956 1.00000 1560723 0.99939 0.00101 0.00033 0.59828 0.01204 550 | NA19448 984521 1.00000 1590247 0.99955 0.00082 0.00027 0.61763 0.01242 551 | HG01161 903048 1.00000 1710915 0.99954 0.00087 0.00027 0.65453 0.01226 552 | HG01571 988915 1.00000 1595356 0.99951 0.00095 0.00030 0.61733 0.01134 553 | HG02724 946532 1.00000 1666301 0.99938 0.00336 0.00122 0.63774 0.01219 554 | HG00269 914744 1.00000 1581570 0.99953 0.00113 0.00035 0.63356 0.01246 555 | NA20588 930783 1.00000 1630385 0.99957 0.00118 0.00039 0.63658 0.01116 556 | HG00107 918190 1.00000 1618561 0.99955 0.00088 0.00028 0.63804 0.01180 557 | HG01149 953053 1.00000 1740762 0.99963 0.00130 0.00042 0.64621 0.00858 558 | HG01070 909757 1.00000 1655960 0.99960 0.00089 0.00027 0.64542 0.01199 559 | HG01257 927896 1.00000 1662735 0.99957 0.00083 0.00026 0.64183 0.01133 560 | HG02390 1001988 1.00000 1474164 0.99941 0.00166 0.00059 0.59534 0.01421 561 | HG01097 898505 1.00000 1675919 0.99958 0.00089 0.00028 0.65099 0.01201 562 | HG03895 991587 1.00000 1554539 0.99934 0.00304 0.00116 0.61055 0.01451 563 | HG01241 901972 1.00000 1741787 0.99958 0.00121 0.00038 0.65883 0.01142 564 | HG01961 1091192 1.00000 1340549 0.99919 0.00276 0.00111 0.55127 0.01421 565 | NA20527 907052 1.00000 1636594 0.99955 0.00129 0.00039 0.64340 0.01267 566 | HG01708 898108 1.00000 1656875 0.99951 0.00092 0.00029 0.64849 0.01263 567 | HG02402 1020038 1.00000 1496068 0.99950 0.00091 0.00029 0.59460 0.01387 568 | HG02179 1031232 1.00000 1546481 0.99952 0.00078 0.00025 0.59994 0.01261 569 | HG01495 883297 1.00000 1692266 0.99953 0.00090 0.00028 0.65705 0.01256 570 | NA20822 917353 1.00000 1654279 0.99956 0.00098 0.00030 0.64328 0.01196 571 | HG00637 891432 1.00000 1723651 0.99949 0.00099 0.00030 0.65912 0.01209 572 | NA18642 1034497 1.00000 1573525 0.99949 0.00127 0.00039 0.60334 0.01149 573 | HG00375 944808 1.00000 1643290 0.99953 0.00148 0.00048 0.63494 0.01144 574 | NA21128 952259 1.00000 1704417 0.99952 0.00104 0.00032 0.64156 0.00969 575 | HG03577 967751 1.00000 1556380 0.99950 0.00185 0.00068 0.61660 0.01325 576 | HG03631 926811 1.00000 1659264 0.99954 0.00134 0.00041 0.64161 0.01203 577 | HG03971 944462 1.00000 1661417 0.99946 0.00157 0.00053 0.63756 0.01356 578 | NA18530 1045034 1.00000 1564369 0.99950 0.00101 0.00034 0.59951 0.01186 579 | HG01697 909341 1.00000 1624129 0.99950 0.00096 0.00029 0.64107 0.01350 580 | HG03058 987626 1.00000 1572433 0.99953 0.00096 0.00032 0.61422 0.01212 581 | HG03808 933149 1.00000 1670140 0.99947 0.00116 0.00038 0.64155 0.01279 582 | NA18989 1071223 1.00000 1565918 0.99952 0.00106 0.00035 0.59379 0.01002 583 | HG00329 931948 1.00000 1653129 0.99951 0.00101 0.00031 0.63949 0.01127 584 | HG03833 941236 1.00000 1707266 0.99949 0.00250 0.00090 0.64462 0.01250 585 | HG04194 928310 1.00000 1688264 0.99953 0.00209 0.00072 0.64522 0.01252 586 | NA20362 926112 1.00000 1721792 0.99955 0.00092 0.00030 0.65025 0.01127 587 | HG02545 914608 1.00000 1574765 0.99948 0.00093 0.00031 0.63260 0.01456 588 | HG00160 931783 1.00000 1612570 0.99952 0.00091 0.00029 0.63378 0.01221 589 | NA19222 992502 1.00000 1571657 0.99947 0.00085 0.00029 0.61293 0.01216 590 | NA18991 1027210 1.00000 1530012 0.99950 0.00087 0.00028 0.59831 0.01278 591 | NA20769 910807 1.00000 1659500 0.99958 0.00087 0.00027 0.64564 0.01146 592 | NA20317 889715 1.00000 1699165 0.99955 0.00091 0.00028 0.65633 0.01305 593 | NA12829 939078 1.00000 1671334 0.99963 0.00105 0.00033 0.64026 0.00832 594 | HG02323 951701 1.00000 1616416 0.99947 0.00179 0.00067 0.62942 0.01302 595 | NA19834 924191 1.00000 1756678 0.99959 0.00106 0.00034 0.65526 0.00928 596 | HG00254 927748 1.00000 1648165 0.99955 0.00093 0.00029 0.63984 0.01133 597 | HG00280 941768 1.00000 1649083 0.99956 0.00089 0.00027 0.63650 0.01134 598 | HG02137 1052172 1.00000 1526651 0.99947 0.00087 0.00028 0.59200 0.01270 599 | HG00867 1038200 1.00000 1547404 0.99949 0.00096 0.00031 0.59847 0.01212 600 | HG01686 908062 1.00000 1604906 0.99949 0.00096 0.00030 0.63865 0.01349 601 | NA11843 900469 1.00000 1593392 0.99951 0.00106 0.00032 0.63893 0.01301 602 | NA19711 937924 1.00000 1647047 0.99945 0.00086 0.00028 0.63716 0.01315 603 | HG00452 1032983 1.00000 1535942 0.99952 0.00088 0.00028 0.59789 0.01259 604 | NA18993 1046254 1.00000 1541773 0.99947 0.00084 0.00027 0.59573 0.01267 605 | HG00632 1022392 1.00000 1492600 0.99951 0.00083 0.00026 0.59348 0.01336 606 | HG03640 940483 1.00000 1632283 0.99955 0.00165 0.00051 0.63445 0.01172 607 | HG04159 945460 1.00000 1716596 0.99953 0.00249 0.00089 0.64484 0.01133 608 | NA19159 986593 1.00000 1600614 0.99951 0.00083 0.00028 0.61866 0.01159 609 | NA19204 986067 1.00000 1570388 0.99949 0.00085 0.00028 0.61428 0.01241 610 | HG01617 917692 1.00000 1609971 0.99954 0.00087 0.00027 0.63694 0.01333 611 | HG03832 912069 1.00000 1654495 0.99939 0.00362 0.00135 0.64463 0.01384 612 | HG03949 963926 1.00000 1629271 0.99951 0.00241 0.00088 0.62829 0.01165 613 | NA18507 976940 1.00000 1571895 0.99949 0.00081 0.00027 0.61671 0.01249 614 | NA18504 963326 1.00000 1544549 0.99952 0.00086 0.00028 0.61588 0.01323 615 | HG02054 916490 1.00000 1601847 0.99951 0.00104 0.00037 0.63607 0.01377 616 | NA12828 917929 1.00000 1621834 0.99952 0.00094 0.00029 0.63858 0.01284 617 | HG01620 905439 1.00000 1598080 0.99951 0.00090 0.00028 0.63833 0.01355 618 | NA19238 1002449 1.00000 1613944 0.99952 0.00108 0.00035 0.61686 0.01063 619 | HG01082 885102 1.00000 1741419 0.99955 0.00090 0.00028 0.66301 0.01191 620 | HG01131 929141 1.00000 1685167 0.99954 0.00093 0.00029 0.64459 0.01188 621 | HG02628 973246 1.00000 1572062 0.99946 0.00124 0.00044 0.61763 0.01360 622 | HG00608 1074180 1.00000 1573217 0.99955 0.00112 0.00036 0.59425 0.00940 623 | HG01770 911517 1.00000 1601470 0.99953 0.00097 0.00030 0.63728 0.01180 624 | NA19000 1057929 1.00000 1559569 0.99945 0.00110 0.00037 0.59582 0.01178 625 | HG03693 958197 1.00000 1686754 0.99955 0.00108 0.00034 0.63773 0.01143 626 | NA20127 968277 1.00000 1671347 0.99957 0.00092 0.00030 0.63318 0.00953 627 | NA18522 965009 1.00000 1546437 0.99956 0.00088 0.00029 0.61576 0.01340 628 | HG01990 937897 1.00000 1601945 0.99953 0.00078 0.00025 0.63073 0.01336 629 | HG01464 905833 1.00000 1746817 0.99956 0.00090 0.00028 0.65852 0.01202 630 | HG00409 1013402 1.00000 1480942 0.99950 0.00100 0.00031 0.59372 0.01341 631 | HG03692 957241 1.00000 1628064 0.99955 0.00086 0.00027 0.62974 0.01276 632 | NA06994 905640 1.00000 1589978 0.99955 0.00105 0.00032 0.63711 0.01306 633 | NA12874 969901 1.00000 1580375 0.99945 0.00163 0.00063 0.61969 0.01103 634 | NA18950 1038264 1.00000 1538200 0.99948 0.00082 0.00026 0.59702 0.01279 635 | HG03777 939098 1.00000 1665357 0.99955 0.00087 0.00027 0.63943 0.01224 636 | HG02477 936288 1.00000 1661187 0.99948 0.00155 0.00057 0.63954 0.01297 637 | HG03782 910683 1.00000 1632038 0.99949 0.00149 0.00050 0.64185 0.01417 638 | HG00557 1052467 1.00000 1535930 0.99947 0.00089 0.00028 0.59339 0.01197 639 | HG00265 944918 1.00000 1631651 0.99953 0.00103 0.00033 0.63327 0.01085 640 | HG01756 920956 1.00000 1643060 0.99956 0.00095 0.00029 0.64082 0.01129 641 | NA11931 922840 1.00000 1646293 0.99953 0.00086 0.00027 0.64080 0.01179 642 | NA18999 1049694 1.00000 1572442 0.99950 0.00095 0.00029 0.59968 0.01213 643 | NA19137 972726 1.00000 1546694 0.99954 0.00091 0.00030 0.61391 0.01351 644 | NA19214 1010443 1.00000 1612707 0.99953 0.00095 0.00032 0.61480 0.00988 645 | HG03778 952594 1.00000 1701959 0.99953 0.00130 0.00043 0.64115 0.00972 646 | NA20763 924855 1.00000 1675853 0.99954 0.00106 0.00034 0.64438 0.01010 647 | HG04177 956022 1.00000 1667621 0.99953 0.00226 0.00080 0.63561 0.01121 648 | NA19201 968916 1.00000 1535725 0.99947 0.00112 0.00037 0.61315 0.01436 649 | NA20587 941336 1.00000 1641882 0.99952 0.00089 0.00028 0.63560 0.01140 650 | HG01871 1035166 1.00000 1548187 0.99950 0.00096 0.00030 0.59929 0.01213 651 | HG01204 893233 1.00000 1684637 0.99955 0.00083 0.00025 0.65350 0.01274 652 | HG01444 910703 1.00000 1691230 0.99947 0.00234 0.00084 0.64999 0.01251 653 | HG03814 925497 1.00000 1608563 0.99948 0.00094 0.00029 0.63478 0.01348 654 | HG02138 1039969 1.00000 1553204 0.99951 0.00086 0.00028 0.59896 0.01305 655 | HG02337 951726 1.00000 1646778 0.99949 0.00244 0.00094 0.63374 0.01206 656 | HG03572 968408 1.00000 1560931 0.99939 0.00245 0.00094 0.61713 0.01410 657 | HG03681 933448 1.00000 1615687 0.99952 0.00098 0.00032 0.63382 0.01280 658 | NA19789 912410 1.00000 1670210 0.99954 0.00081 0.00025 0.64671 0.01362 659 | HG02048 1025771 1.00000 1551417 0.99952 0.00079 0.00025 0.60198 0.01276 660 | HG02186 1035126 1.00000 1533550 0.99950 0.00080 0.00026 0.59702 0.01194 661 | HG03209 983842 1.00000 1570691 0.99948 0.00134 0.00048 0.61486 0.01297 662 | HG01572 1064432 1.00000 1376088 0.99945 0.00091 0.00029 0.56385 0.01380 663 | NA19920 946341 1.00000 1647300 0.99957 0.00087 0.00028 0.63513 0.01142 664 | HG00553 893060 1.00000 1754288 0.99957 0.00083 0.00026 0.66266 0.01088 665 | HG01055 894691 1.00000 1723823 0.99953 0.00092 0.00028 0.65832 0.01167 666 | HG01849 1034818 1.00000 1569861 0.99954 0.00088 0.00028 0.60271 0.01231 667 | NA19307 972189 1.00000 1624626 0.99953 0.00086 0.00028 0.62562 0.01194 668 | HG02058 1022490 1.00000 1576015 0.99951 0.00082 0.00027 0.60651 0.01255 669 | HG04198 948359 1.00000 1719527 0.99950 0.00567 0.00212 0.64453 0.00906 670 | HG02890 959861 1.00000 1571031 0.99947 0.00212 0.00081 0.62074 0.01325 671 | HG01431 909373 1.00000 1702121 0.99955 0.00087 0.00027 0.65178 0.01187 672 | HG02064 1014498 1.00000 1526552 0.99943 0.00170 0.00060 0.60076 0.01410 673 | HG00178 922108 1.00000 1628937 0.99952 0.00080 0.00025 0.63854 0.01264 674 | NA21133 960233 1.00000 1706425 0.99953 0.00107 0.00034 0.63991 0.01004 675 | HG01302 887855 1.00000 1736343 0.99956 0.00105 0.00032 0.66167 0.01208 676 | HG02603 938982 1.00000 1656455 0.99949 0.00172 0.00062 0.63822 0.01238 677 | HG01080 913794 1.00000 1722639 0.99952 0.00090 0.00028 0.65340 0.01145 678 | NA20585 955985 1.00000 1528125 0.99953 0.00128 0.00040 0.61516 0.01173 679 | HG00759 1033242 1.00000 1515080 0.99954 0.00089 0.00028 0.59454 0.01222 680 | NA19213 966613 1.00000 1545917 0.99950 0.00071 0.00024 0.61528 0.01365 681 | HG03913 936374 1.00000 1678870 0.99958 0.00116 0.00038 0.64196 0.01144 682 | HG01098 895713 1.00000 1707083 0.99953 0.00114 0.00035 0.65587 0.01194 683 | HG02429 961274 1.00000 1625895 0.99945 0.00160 0.00060 0.62845 0.01230 684 | HG03598 890855 1.00000 1620024 0.99955 0.00212 0.00066 0.64520 0.01314 685 | HG00323 915307 1.00000 1587194 0.99957 0.00109 0.00034 0.63424 0.01288 686 | HG02610 970115 1.00000 1566696 0.99951 0.00084 0.00028 0.61758 0.01328 687 | HG03731 933332 1.00000 1640684 0.99949 0.00099 0.00031 0.63740 0.01352 688 | HG02184 1043956 1.00000 1543325 0.99947 0.00077 0.00025 0.59650 0.01203 689 | HG00252 941804 1.00000 1606545 0.99954 0.00092 0.00029 0.63043 0.01184 690 | HG02185 1050743 1.00000 1514826 0.99946 0.00152 0.00053 0.59044 0.01200 691 | HG02757 1004140 1.00000 1609241 0.99956 0.00251 0.00096 0.61577 0.00947 692 | NA19700 923737 1.00000 1683672 0.99956 0.00097 0.00032 0.64573 0.01278 693 | HG03567 977177 1.00000 1569434 0.99955 0.00090 0.00031 0.61628 0.01241 694 | HG00479 1009973 1.00000 1502289 0.99944 0.00110 0.00034 0.59798 0.01382 695 | HG02774 904634 1.00000 1652386 0.99950 0.00155 0.00052 0.64622 0.01271 696 | HG00250 904929 1.00000 1597460 0.99950 0.00090 0.00028 0.63837 0.01295 697 | HG01986 917251 1.00000 1607318 0.99954 0.00099 0.00034 0.63667 0.01319 698 | NA19741 1017111 1.00000 1481231 0.99953 0.00081 0.00026 0.59289 0.01295 699 | HG02439 962619 1.00000 1624520 0.99951 0.00220 0.00086 0.62792 0.01189 700 | NA19146 980663 1.00000 1565653 0.99941 0.00356 0.00144 0.61487 0.01243 701 | NA06984 922375 1.00000 1629265 0.99952 0.00097 0.00031 0.63852 0.01252 702 | HG02223 903747 1.00000 1650383 0.99953 0.00087 0.00028 0.64616 0.01228 703 | HG03823 928746 1.00000 1662157 0.99951 0.00170 0.00058 0.64154 0.01281 704 | NA18591 1067241 1.00000 1566689 0.99950 0.00092 0.00029 0.59481 0.01011 705 | NA19773 892189 1.00000 1692842 0.99954 0.00091 0.00027 0.65486 0.01331 706 | HG00129 901793 1.00000 1576157 0.99953 0.00091 0.00028 0.63607 0.01306 707 | HG00614 1029956 1.00000 1539236 0.99951 0.00115 0.00039 0.59911 0.01263 708 | HG01177 928969 1.00000 1694223 0.99954 0.00101 0.00031 0.64586 0.01125 709 | HG02345 927565 1.00000 1713823 0.99957 0.00132 0.00042 0.64883 0.01147 710 | HG03644 920212 1.00000 1644995 0.99953 0.00139 0.00043 0.64127 0.01269 711 | HG03908 957513 1.00000 1717539 0.99959 0.00222 0.00078 0.64206 0.00989 712 | HG00096 931093 1.00000 1644866 0.99954 0.00089 0.00028 0.63855 0.01157 713 | HG01804 1024879 1.00000 1528971 0.99950 0.00095 0.00030 0.59869 0.01344 714 | HG03025 950925 1.00000 1539037 0.99935 0.00219 0.00084 0.61810 0.01450 715 | HG01796 1027660 1.00000 1519356 0.99953 0.00098 0.00031 0.59652 0.01210 716 | NA18619 1037150 1.00000 1544184 0.99958 0.00097 0.00031 0.59821 0.01224 717 | NA20506 921963 1.00000 1637642 0.99955 0.00137 0.00042 0.63980 0.01164 718 | NA20797 899042 1.00000 1627743 0.99957 0.00129 0.00039 0.64420 0.01185 719 | NA19383 980708 1.00000 1607993 0.99953 0.00086 0.00028 0.62116 0.01165 720 | HG02425 957945 1.00000 1633907 0.99953 0.00093 0.00030 0.63040 0.01227 721 | NA19431 973674 1.00000 1600003 0.99958 0.00082 0.00027 0.62168 0.01194 722 | HG03595 945717 1.00000 1733620 0.99954 0.00176 0.00061 0.64703 0.01111 723 | HG02304 1013286 1.00000 1562857 0.99943 0.00098 0.00032 0.60667 0.01359 724 | HG04054 982626 1.00000 1650765 0.99954 0.00168 0.00056 0.62686 0.01020 725 | HG02759 1030619 1.00000 1499652 0.99948 0.00110 0.00040 0.59268 0.01212 726 | HG01046 1047552 1.00000 1530057 0.99953 0.00086 0.00028 0.59360 0.01210 727 | HG00542 1037951 1.00000 1525337 0.99939 0.00105 0.00034 0.59507 0.01366 728 | HG02076 1042004 1.00000 1549792 0.99950 0.00084 0.00027 0.59796 0.01151 729 | HG03742 940758 1.00000 1692498 0.99954 0.00095 0.00030 0.64274 0.01151 730 | HG01685 889387 1.00000 1610852 0.99954 0.00089 0.00027 0.64428 0.01311 731 | HG04195 931695 1.00000 1686605 0.99943 0.00408 0.00150 0.64416 0.01155 732 | HG02292 1060358 1.00000 1463648 0.99950 0.00129 0.00042 0.57989 0.01222 733 | NA18910 993170 1.00000 1578458 0.99957 0.00072 0.00024 0.61380 0.01266 734 | NA18564 1028021 1.00000 1574180 0.99951 0.00096 0.00030 0.60494 0.01218 735 | NA18994 1057884 1.00000 1563884 0.99953 0.00092 0.00030 0.59650 0.01124 736 | NA19067 1058707 1.00000 1544734 0.99945 0.00085 0.00027 0.59334 0.01253 737 | NA20845 935194 1.00000 1701219 0.99955 0.00108 0.00034 0.64528 0.01139 738 | HG03111 984646 1.00000 1570025 0.99951 0.00145 0.00052 0.61457 0.01189 739 | HG04026 984814 1.00000 1581395 0.99937 0.00303 0.00114 0.61624 0.01243 740 | NA19457 965211 1.00000 1592298 0.99955 0.00067 0.00022 0.62260 0.01199 741 | NA20881 931025 1.00000 1685697 0.99955 0.00089 0.00028 0.64420 0.01206 742 | HG01113 916943 1.00000 1677074 0.99953 0.00093 0.00029 0.64652 0.01193 743 | HG01089 907171 1.00000 1788373 0.99959 0.00101 0.00031 0.66346 0.00971 744 | HG03565 987690 1.00000 1591037 0.99951 0.00211 0.00080 0.61699 0.01151 745 | HG00115 887212 1.00000 1573165 0.99954 0.00083 0.00026 0.63940 0.01359 746 | HG02449 973552 1.00000 1609430 0.99951 0.00088 0.00029 0.62309 0.01157 747 | NA18517 975553 1.00000 1568695 0.99957 0.00110 0.00038 0.61657 0.01175 748 | NA20357 936505 1.00000 1660074 0.99955 0.00086 0.00028 0.63933 0.01149 749 | NA18968 1057460 1.00000 1544027 0.99940 0.00113 0.00036 0.59352 0.01227 750 | HG00641 900292 1.00000 1671136 0.99955 0.00105 0.00033 0.64989 0.01208 751 | HG02684 1051160 1.00000 1423342 0.99948 0.00115 0.00040 0.57520 0.01290 752 | HG00446 1047426 1.00000 1542608 0.99951 0.00086 0.00027 0.59559 0.01187 753 | NA20806 946015 1.00000 1628536 0.99957 0.00097 0.00030 0.63255 0.01080 754 | HG00337 906897 1.00000 1614024 0.99957 0.00093 0.00029 0.64025 0.01271 755 | HG00543 1054867 1.00000 1576673 0.99952 0.00089 0.00029 0.59914 0.01117 756 | HG03854 1007690 1.00000 1581845 0.99942 0.00366 0.00140 0.61086 0.01161 757 | HG04158 935807 1.00000 1683493 0.99946 0.00304 0.00110 0.64273 0.01263 758 | NA19315 984669 1.00000 1614042 0.99955 0.00092 0.00030 0.62109 0.01155 759 | HG03953 872814 1.00000 1547996 0.99939 0.00298 0.00111 0.63945 0.01484 760 | NA19057 1029418 1.00000 1518017 0.99947 0.00096 0.00031 0.59590 0.01348 761 | HG02756 979151 1.00000 1572039 0.99954 0.00087 0.00030 0.61620 0.01327 762 | NA19703 938978 1.00000 1664936 0.99953 0.00102 0.00033 0.63940 0.01153 763 | HG03649 924540 1.00000 1705078 0.99954 0.00124 0.00041 0.64841 0.01210 764 | NA20522 909156 1.00000 1628962 0.99953 0.00120 0.00040 0.64180 0.01215 765 | NA20314 950739 1.00000 1568455 0.99954 0.00097 0.00030 0.62260 0.01292 766 | NA18745 1040781 1.00000 1557875 0.99954 0.00125 0.00039 0.59949 0.01146 767 | HG03120 991922 1.00000 1590081 0.99951 0.00149 0.00052 0.61583 0.01219 768 | HG03376 967975 1.00000 1557128 0.99946 0.00232 0.00087 0.61666 0.01340 769 | HG01351 916792 1.00000 1635854 0.99956 0.00140 0.00042 0.64085 0.01270 770 | NA19085 1005487 1.00000 1506641 0.99943 0.00094 0.00030 0.59975 0.01430 771 | HG01694 913508 1.00000 1602694 0.99953 0.00088 0.00028 0.63695 0.01294 772 | NA20887 945767 1.00000 1684408 0.99952 0.00091 0.00028 0.64042 0.01179 773 | HG03888 934144 1.00000 1666324 0.99952 0.00165 0.00058 0.64078 0.01299 774 | HG03634 932349 1.00000 1691026 0.99952 0.00154 0.00053 0.64460 0.01125 775 | HG00864 1032036 1.00000 1553085 0.99950 0.00089 0.00028 0.60078 0.01211 776 | HG01383 952518 1.00000 1653788 0.99954 0.00098 0.00030 0.63453 0.01158 777 | HG01618 904809 1.00000 1607484 0.99953 0.00095 0.00029 0.63985 0.01268 778 | HG03069 997354 1.00000 1602167 0.99952 0.00128 0.00045 0.61633 0.01105 779 | HG03351 999341 1.00000 1591138 0.99951 0.00178 0.00065 0.61423 0.01072 780 | NA21135 948932 1.00000 1683917 0.99953 0.00098 0.00031 0.63958 0.01152 781 | HG00384 931954 1.00000 1627390 0.99934 0.00424 0.00162 0.63586 0.01235 782 | NA19663 929850 1.00000 1572723 0.99952 0.00076 0.00024 0.62844 0.01312 783 | HG01890 934129 1.00000 1659997 0.99957 0.00086 0.00028 0.63991 0.01320 784 | HG04152 998770 1.00000 1628685 0.99943 0.00451 0.00172 0.61987 0.01050 785 | HG00982 1054614 1.00000 1542840 0.99936 0.00357 0.00136 0.59398 0.01308 786 | NA18878 993075 1.00000 1598189 0.99952 0.00091 0.00030 0.61676 0.01090 787 | HG01171 891372 1.00000 1748623 0.99955 0.00092 0.00028 0.66236 0.01139 788 | HG03931 920892 1.00000 1687124 0.99957 0.00086 0.00027 0.64690 0.01302 789 | HG00190 933155 1.00000 1639156 0.99955 0.00094 0.00029 0.63723 0.01188 790 | HG04211 1059058 1.00000 1389592 0.99936 0.00137 0.00047 0.56749 0.01363 791 | NA18961 1046607 1.00000 1516532 0.99951 0.00108 0.00036 0.59167 0.01262 792 | NA19716 945325 1.00000 1636918 0.99951 0.00077 0.00024 0.63391 0.01342 793 | NA12342 976289 1.00000 1602281 0.99951 0.00111 0.00036 0.62138 0.01017 794 | NA19649 894652 1.00000 1593299 0.99955 0.00090 0.00028 0.64041 0.01389 795 | HG00743 888963 1.00000 1633587 0.99951 0.00087 0.00027 0.64759 0.01312 796 | HG03485 976609 1.00000 1547186 0.99947 0.00249 0.00095 0.61304 0.01295 797 | HG00407 1040672 1.00000 1566608 0.99950 0.00088 0.00028 0.60086 0.01147 798 | HG01862 1045411 1.00000 1560599 0.99952 0.00087 0.00027 0.59885 0.01203 799 | NA19129 999724 1.00000 1581469 0.99956 0.00080 0.00027 0.61269 0.01127 800 | HG01395 911831 1.00000 1695393 0.99955 0.00091 0.00029 0.65027 0.01105 801 | HG03917 942663 1.00000 1714257 0.99926 0.00871 0.00331 0.64520 0.01125 802 | NA18557 1038454 1.00000 1519011 0.99945 0.00095 0.00029 0.59395 0.01231 803 | HG00176 932774 1.00000 1648134 0.99954 0.00094 0.00029 0.63859 0.01117 804 | NA18648 1041125 1.00000 1565467 0.99955 0.00088 0.00028 0.60058 0.01125 805 | NA18861 979460 1.00000 1567499 0.99952 0.00085 0.00028 0.61544 0.01269 806 | NA19701 921269 1.00000 1680451 0.99955 0.00086 0.00027 0.64590 0.01184 807 | NA07051 930523 1.00000 1599962 0.99952 0.00092 0.00029 0.63227 0.01288 808 | HG02278 1062763 1.00000 1437881 0.99942 0.00118 0.00042 0.57500 0.01357 809 | NA20516 928554 1.00000 1635517 0.99950 0.00186 0.00067 0.63786 0.01225 810 | NA19722 909627 1.00000 1665504 0.99950 0.00093 0.00028 0.64676 0.01253 811 | NA18610 1032700 1.00000 1528536 0.99955 0.00089 0.00028 0.59680 0.01257 812 | NA20332 871610 1.00000 1640536 0.99958 0.00090 0.00028 0.65304 0.01332 813 | HG00120 944127 1.00000 1661030 0.99953 0.00087 0.00028 0.63759 0.01018 814 | HG01437 931540 1.00000 1651757 0.99956 0.00091 0.00029 0.63940 0.01196 815 | NA12889 931798 1.00000 1668235 0.99922 0.00146 0.00046 0.64162 0.01576 816 | HG02870 995150 1.00000 1572698 0.99934 0.00502 0.00207 0.61246 0.01215 817 | HG01308 881546 1.00000 1743259 0.99957 0.00130 0.00040 0.66415 0.01142 818 | NA19681 933286 1.00000 1603535 0.99951 0.00085 0.00026 0.63210 0.01303 819 | HG00109 925775 1.00000 1660437 0.99950 0.00111 0.00033 0.64203 0.01155 820 | HG03079 957446 1.00000 1530159 0.99949 0.00130 0.00047 0.61511 0.01407 821 | HG01077 888310 1.00000 1719762 0.99957 0.00090 0.00027 0.65940 0.01164 822 | HG01515 924354 1.00000 1592395 0.99951 0.00092 0.00029 0.63272 0.01290 823 | HG03708 956516 1.00000 1713293 0.99953 0.00148 0.00050 0.64173 0.01005 824 | NA20778 923395 1.00000 1653894 0.99951 0.00099 0.00031 0.64172 0.01151 825 | HG01971 963887 1.00000 1665550 0.99953 0.00088 0.00027 0.63342 0.01211 826 | HG02792 920288 1.00000 1637173 0.99955 0.00169 0.00060 0.64016 0.01273 827 | NA21122 929843 1.00000 1638908 0.99951 0.00091 0.00028 0.63802 0.01254 828 | HG02134 1038550 1.00000 1549745 0.99951 0.00089 0.00029 0.59875 0.01291 829 | HG00278 948821 1.00000 1641716 0.99960 0.00095 0.00029 0.63374 0.01069 830 | HG01200 941335 1.00000 1633653 0.99949 0.00088 0.00028 0.63443 0.01270 831 | HG02635 992216 1.00000 1584256 0.99954 0.00121 0.00043 0.61489 0.01163 832 | HG01624 917631 1.00000 1628496 0.99957 0.00092 0.00028 0.63960 0.01166 833 | HG02817 965946 1.00000 1566735 0.99953 0.00093 0.00031 0.61861 0.01256 834 | HG03916 941723 1.00000 1684928 0.99953 0.00090 0.00028 0.64147 0.01186 835 | NA19436 961355 1.00000 1615667 0.99954 0.00074 0.00024 0.62695 0.01271 836 | HG01619 912268 1.00000 1653400 0.99957 0.00089 0.00028 0.64443 0.01187 837 | HG03780 923832 1.00000 1649744 0.99953 0.00122 0.00041 0.64103 0.01245 838 | HG01101 919945 1.00000 1714594 0.99951 0.00104 0.00032 0.65081 0.01167 839 | NA12347 916786 1.00000 1660554 0.99959 0.00099 0.00031 0.64429 0.01133 840 | NA19090 1078102 1.00000 1558299 0.99951 0.00100 0.00032 0.59107 0.01022 841 | NA12750 933464 1.00000 1654670 0.99954 0.00093 0.00029 0.63933 0.01166 842 | HG03470 993769 1.00000 1599892 0.99949 0.00252 0.00094 0.61685 0.01167 843 | NA18528 1015406 1.00000 1511453 0.99949 0.00076 0.00025 0.59815 0.01425 844 | HG03830 917886 1.00000 1650108 0.99953 0.00090 0.00029 0.64257 0.01408 845 | HG02604 1012806 1.00000 1465466 0.99948 0.00108 0.00036 0.59133 0.01291 846 | HG01628 911726 1.00000 1604558 0.99951 0.00091 0.00029 0.63767 0.01291 847 | NA18605 1045728 1.00000 1542972 0.99952 0.00103 0.00032 0.59604 0.01240 848 | HG01602 916910 1.00000 1610030 0.99951 0.00095 0.00030 0.63715 0.01475 849 | HG01136 919525 1.00000 1737509 0.99957 0.00089 0.00028 0.65393 0.01077 850 | NA19684 889158 1.00000 1725000 0.99958 0.00095 0.00029 0.65987 0.01192 851 | NA20827 939923 1.00000 1673320 0.99954 0.00116 0.00036 0.64032 0.01019 852 | HG02272 1129186 1.00000 1344015 0.99946 0.00118 0.00041 0.54343 0.01189 853 | HG03767 915650 1.00000 1625122 0.99939 0.00379 0.00142 0.63962 0.01318 854 | HG00683 1031660 1.00000 1531600 0.99953 0.00133 0.00041 0.59752 0.01261 855 | HG00692 1039088 1.00000 1549551 0.99948 0.00135 0.00046 0.59860 0.01253 856 | HG02974 963134 1.00000 1546983 0.99954 0.00108 0.00037 0.61630 0.01279 857 | HG03711 959416 1.00000 1605711 0.99948 0.00092 0.00029 0.62598 0.01369 858 | NA18489 1018624 1.00000 1609896 0.99966 0.00116 0.00040 0.61247 0.00756 859 | HG02715 987757 1.00000 1610973 0.99950 0.00125 0.00044 0.61991 0.01172 860 | HG03652 947056 1.00000 1706903 0.99952 0.00161 0.00056 0.64315 0.01085 861 | NA20278 797941 1.00000 1875731 0.99958 0.00101 0.00030 0.70156 0.01207 862 | HG04153 953625 1.00000 1729734 0.99953 0.00253 0.00090 0.64462 0.00937 863 | NA19116 980490 1.00000 1584502 0.99948 0.00110 0.00038 0.61774 0.01207 864 | HG01801 1052257 1.00000 1530443 0.99953 0.00093 0.00030 0.59257 0.01294 865 | HG02614 954109 1.00000 1571614 0.99954 0.00175 0.00066 0.62224 0.01251 866 | HG00336 921216 1.00000 1647583 0.99956 0.00101 0.00031 0.64138 0.01154 867 | NA11930 888612 1.00000 1620767 0.99954 0.00101 0.00031 0.64588 0.01319 868 | HG01679 951324 1.00000 1541293 0.99949 0.00082 0.00026 0.61834 0.01274 869 | HG02309 935589 1.00000 1610316 0.99954 0.00077 0.00025 0.63251 0.01285 870 | HG00330 923721 1.00000 1638072 0.99952 0.00089 0.00028 0.63942 0.01217 871 | NA19376 971055 1.00000 1614377 0.99954 0.00082 0.00027 0.62441 0.01195 872 | NA19060 1060080 1.00000 1542253 0.99951 0.00095 0.00031 0.59264 0.01222 873 | HG02780 1032120 1.00000 1563241 0.99950 0.00177 0.00062 0.60232 0.01128 874 | HG00142 910736 1.00000 1646329 0.99958 0.00078 0.00025 0.64384 0.01604 875 | HG03604 949955 1.00000 1681386 0.99944 0.00337 0.00121 0.63898 0.01207 876 | HG02259 1105082 1.00000 1399589 0.99948 0.00094 0.00031 0.55879 0.01203 877 | HG02394 1041644 1.00000 1522047 0.99945 0.00129 0.00044 0.59369 0.01258 878 | NA18544 1030096 1.00000 1534868 0.99949 0.00095 0.00031 0.59840 0.01281 879 | NA19456 956520 1.00000 1601193 0.99953 0.00090 0.00030 0.62603 0.01209 880 | HG01462 887298 1.00000 1757696 0.99955 0.00093 0.00028 0.66454 0.01155 881 | HG00662 1074989 1.00000 1565504 0.99960 0.00201 0.00066 0.59288 0.00914 882 | HG03698 958272 1.00000 1667485 0.99956 0.00090 0.00029 0.63505 0.01193 883 | NA19475 963237 1.00000 1603154 0.99953 0.00069 0.00023 0.62467 0.01251 884 | HG01374 945931 1.00000 1671298 0.99959 0.00100 0.00032 0.63858 0.01121 885 | HG03589 929132 1.00000 1663217 0.99950 0.00219 0.00075 0.64159 0.01194 886 | HG03720 950865 1.00000 1647259 0.99945 0.00226 0.00081 0.63402 0.01313 887 | HG01992 1050692 1.00000 1405998 0.99946 0.00084 0.00028 0.57231 0.01393 888 | HG03762 906509 1.00000 1659356 0.99904 0.00754 0.00282 0.64670 0.01442 889 | NA20814 925408 1.00000 1656395 0.99957 0.00092 0.00029 0.64157 0.01155 890 | HG03645 932996 1.00000 1651179 0.99953 0.00151 0.00047 0.63896 0.01258 891 | HG00326 955545 1.00000 1663027 0.99956 0.00107 0.00033 0.63509 0.01000 892 | NA21123 948913 1.00000 1685113 0.99956 0.00102 0.00031 0.63975 0.01169 893 | HG02262 1027143 1.00000 1551711 0.99954 0.00120 0.00037 0.60171 0.01149 894 | HG03673 943287 1.00000 1669962 0.99951 0.00096 0.00031 0.63904 0.01190 895 | HG01461 907645 1.00000 1720261 0.99958 0.00082 0.00026 0.65461 0.01186 896 | HG03697 962243 1.00000 1651977 0.99953 0.00096 0.00031 0.63192 0.01243 897 | NA20886 969354 1.00000 1610639 0.99952 0.00096 0.00030 0.62428 0.01230 898 | NA12045 921169 1.00000 1645759 0.99954 0.00094 0.00029 0.64114 0.01141 899 | HG01951 1077497 1.00000 1377916 0.99940 0.00134 0.00049 0.56117 0.01413 900 | HG02491 925156 1.00000 1694615 0.99954 0.00090 0.00028 0.64686 0.01168 901 | HG01197 910414 1.00000 1667527 0.99956 0.00095 0.00029 0.64684 0.01202 902 | NA12399 943385 1.00000 1652840 0.99954 0.00112 0.00035 0.63663 0.01049 903 | HG01142 909561 1.00000 1753226 0.99957 0.00218 0.00076 0.65842 0.01070 904 | HG01066 916262 1.00000 1681267 0.99954 0.00101 0.00031 0.64726 0.01152 905 | HG03548 980744 1.00000 1565680 0.99955 0.00085 0.00029 0.61485 0.01284 906 | NA20772 899551 1.00000 1563343 0.99953 0.00105 0.00032 0.63476 0.01404 907 | NA18941 1039587 1.00000 1525245 0.99947 0.00085 0.00027 0.59468 0.01276 908 | NA20902 953368 1.00000 1674631 0.99953 0.00084 0.00026 0.63723 0.01184 909 | HG02281 943428 1.00000 1553080 0.99955 0.00086 0.00028 0.62210 0.01372 910 | NA18965 1041027 1.00000 1572896 0.99947 0.00102 0.00032 0.60174 0.01238 911 | HG02389 1007968 1.00000 1474501 0.99948 0.00096 0.00031 0.59397 0.01350 912 | HG01958 927001 1.00000 1677390 0.99959 0.00080 0.00026 0.64406 0.01131 913 | HG01556 874851 1.00000 1715701 0.99957 0.00083 0.00025 0.66229 0.01231 914 | NA19355 970963 1.00000 1616646 0.99954 0.00083 0.00027 0.62476 0.01379 915 | HG01168 904780 1.00000 1652266 0.99953 0.00108 0.00035 0.64616 0.01207 916 | HG00583 1035078 1.00000 1544878 0.99951 0.00128 0.00040 0.59880 0.01182 917 | HG02508 959149 1.00000 1618690 0.99941 0.00256 0.00097 0.62793 0.01289 918 | NA19472 937300 1.00000 1548022 0.99956 0.00072 0.00024 0.62287 0.01351 919 | HG00266 915463 1.00000 1625852 0.99952 0.00079 0.00025 0.63977 0.01256 920 | HG00237 922436 1.00000 1620293 0.99952 0.00088 0.00027 0.63723 0.01190 921 | HG00174 925818 1.00000 1645103 0.99958 0.00108 0.00033 0.63989 0.01109 922 | HG01704 912135 1.00000 1636194 0.99951 0.00089 0.00027 0.64207 0.01252 923 | HG03703 902629 1.00000 1629607 0.99947 0.00092 0.00029 0.64354 0.01397 924 | HG00638 913355 1.00000 1742695 0.99954 0.00088 0.00028 0.65612 0.01084 925 | HG02687 950706 1.00000 1647556 0.99955 0.00123 0.00040 0.63410 0.01175 926 | HG03705 952975 1.00000 1667969 0.99951 0.00103 0.00034 0.63640 0.01216 927 | NA18871 1003754 1.00000 1617855 0.99958 0.00147 0.00055 0.61712 0.00953 928 | NA18972 1060793 1.00000 1566522 0.99949 0.00117 0.00037 0.59624 0.01080 929 | HG01926 1123919 1.00000 1338634 0.99944 0.00087 0.00028 0.54360 0.01249 930 | HG03727 948994 1.00000 1677668 0.99953 0.00098 0.00030 0.63871 0.01143 931 | HG02383 1018234 1.00000 1516688 0.99943 0.00090 0.00029 0.59832 0.01344 932 | HG01148 976036 1.00000 1553420 0.99947 0.00105 0.00035 0.61413 0.01276 933 | HG03694 917277 1.00000 1688011 0.99954 0.00082 0.00026 0.64792 0.01266 934 | HG01092 866586 1.00000 1714034 0.99955 0.00094 0.00029 0.66419 0.01250 935 | HG01939 1018817 1.00000 1569706 0.99946 0.00092 0.00029 0.60641 0.01725 936 | HG01676 929906 1.00000 1601325 0.99955 0.00085 0.00026 0.63263 0.01289 937 | NA19319 987104 1.00000 1620658 0.99956 0.00080 0.00027 0.62147 0.01094 938 | HG01791 884379 1.00000 1558032 0.99950 0.00119 0.00036 0.63791 0.01419 939 | HG00478 1046726 1.00000 1517500 0.99948 0.00104 0.00033 0.59180 0.01249 940 | NA20512 920647 1.00000 1655926 0.99952 0.00123 0.00040 0.64269 0.01171 941 | HG01491 1000306 1.00000 1591222 0.99956 0.00093 0.00030 0.61401 0.00936 942 | NA20802 909572 1.00000 1634686 0.99950 0.00146 0.00045 0.64250 0.01264 943 | HG02070 1021740 1.00000 1529144 0.99951 0.00081 0.00026 0.59946 0.01305 944 | HG02155 1015898 1.00000 1510914 0.99952 0.00114 0.00037 0.59795 0.01304 945 | NA19024 968967 1.00000 1606478 0.99950 0.00078 0.00026 0.62377 0.01246 946 | HG00728 1032671 1.00000 1535674 0.99951 0.00080 0.00025 0.59792 0.01253 947 | HG01489 888241 1.00000 1631557 0.99953 0.00083 0.00026 0.64750 0.01291 948 | HG03905 919283 1.00000 1667514 0.99952 0.00194 0.00068 0.64462 0.01288 949 | NA19923 884841 1.00000 1762077 0.99959 0.00089 0.00028 0.66571 0.01130 950 | NA19309 956602 1.00000 1575699 0.99958 0.00089 0.00029 0.62224 0.01242 951 | NA18992 1058317 1.00000 1412556 0.99940 0.00107 0.00037 0.57168 0.01405 952 | HG00729 1067447 1.00000 1559606 0.99950 0.00117 0.00037 0.59367 0.01064 953 | NA20510 894907 1.00000 1591475 0.99948 0.00130 0.00039 0.64008 0.01374 954 | HG02938 1006203 1.00000 1596155 0.99955 0.00157 0.00058 0.61335 0.01097 955 | HG01767 932602 1.00000 1639410 0.99956 0.00091 0.00029 0.63740 0.01174 956 | HG02946 974127 1.00000 1582651 0.99953 0.00096 0.00032 0.61900 0.01270 957 | HG02153 1044652 1.00000 1531865 0.99955 0.00082 0.00026 0.59455 0.01199 958 | HG03856 922632 1.00000 1586200 0.99953 0.00165 0.00057 0.63225 0.01395 959 | HG02154 1073217 1.00000 1480036 0.99947 0.00082 0.00027 0.57967 0.01258 960 | HG00371 953872 1.00000 1633140 0.99956 0.00116 0.00038 0.63128 0.01077 961 | HG04227 949564 1.00000 1672237 0.99952 0.00244 0.00087 0.63782 0.01135 962 | HG02010 903902 1.00000 1626119 0.99951 0.00072 0.00023 0.64273 0.01373 963 | NA18943 1040170 1.00000 1545287 0.99949 0.00098 0.00031 0.59768 0.01179 964 | HG02982 958840 1.00000 1560214 0.99948 0.00243 0.00093 0.61937 0.01303 965 | HG01968 1102068 1.00000 1405428 0.99948 0.00081 0.00027 0.56049 0.01206 966 | NA18952 1054793 1.00000 1536344 0.99944 0.00090 0.00028 0.59292 0.01284 967 | HG02133 1047555 1.00000 1554074 0.99951 0.00095 0.00030 0.59735 0.01236 968 | HG02308 937063 1.00000 1641398 0.99960 0.00090 0.00031 0.63658 0.01204 969 | NA20826 940080 1.00000 1664251 0.99957 0.00092 0.00029 0.63903 0.01066 970 | HG02318 941042 1.00000 1561652 0.99954 0.00124 0.00044 0.62399 0.01337 971 | HG04029 975287 1.00000 1615559 0.99944 0.00315 0.00119 0.62356 0.01269 972 | HG03729 940092 1.00000 1678183 0.99959 0.00134 0.00046 0.64095 0.01159 973 | HG02721 973506 1.00000 1568992 0.99953 0.00131 0.00047 0.61711 0.01264 974 | HG03556 988278 1.00000 1585270 0.99944 0.00233 0.00089 0.61599 0.01278 975 | HG03824 927819 1.00000 1644525 0.99941 0.00175 0.00059 0.63931 0.01399 976 | NA20895 929667 1.00000 1666901 0.99952 0.00102 0.00031 0.64196 0.01235 977 | HG01973 1003281 1.00000 1470682 0.99950 0.00082 0.00026 0.59446 0.01357 978 | NA18917 973624 1.00000 1591377 0.99951 0.00072 0.00023 0.62042 0.01294 979 | HG00717 1024621 1.00000 1508197 0.99951 0.00087 0.00027 0.59546 0.01316 980 | NA19758 1023270 1.00000 1539540 0.99951 0.00091 0.00029 0.60072 0.01207 981 | HG03862 1033977 1.00000 1468337 0.99943 0.00164 0.00060 0.58679 0.01298 982 | NA19331 974059 1.00000 1623002 0.99959 0.00079 0.00026 0.62494 0.01077 983 | HG01785 935360 1.00000 1660426 0.99954 0.00104 0.00033 0.63966 0.01051 984 | HG02521 1028477 1.00000 1560030 0.99949 0.00088 0.00028 0.60268 0.01250 985 | HG03123 982063 1.00000 1576541 0.99955 0.00114 0.00040 0.61617 0.01216 986 | HG02116 1025693 1.00000 1553593 0.99945 0.00077 0.00024 0.60233 0.01322 987 | NA19648 935834 1.00000 1605928 0.99952 0.00084 0.00026 0.63182 0.01192 988 | NA18559 1055143 1.00000 1569771 0.99951 0.00109 0.00035 0.59803 0.01131 989 | HG00318 907506 1.00000 1592592 0.99951 0.00085 0.00026 0.63701 0.01317 990 | HG01205 906891 1.00000 1764860 0.99960 0.00086 0.00027 0.66056 0.01048 991 | HG03394 985957 1.00000 1569003 0.99952 0.00102 0.00036 0.61410 0.01233 992 | HG01933 970611 1.00000 1633538 0.99955 0.00098 0.00032 0.62728 0.01196 993 | HG02379 1017253 1.00000 1489870 0.99949 0.00090 0.00029 0.59425 0.01343 994 | NA19108 987163 1.00000 1549746 0.99954 0.00085 0.00028 0.61088 0.01259 995 | NA19323 959542 1.00000 1608491 0.99951 0.00081 0.00026 0.62635 0.01220 996 | NA20517 924529 1.00000 1605270 0.99953 0.00116 0.00039 0.63454 0.01234 997 | NA21118 931114 1.00000 1646434 0.99949 0.00089 0.00028 0.63876 0.01337 998 | NA19198 1003083 1.00000 1591787 0.99957 0.00112 0.00038 0.61344 0.01116 999 | HG00281 929651 1.00000 1634965 0.99932 0.00094 0.00029 0.63751 0.02250 1000 | HG00734 907995 1.00000 1686783 0.99954 0.00096 0.00030 0.65007 0.01251 1001 | NA20809 923063 1.00000 1643759 0.99954 0.00102 0.00033 0.64039 0.01170 1002 | HG01494 931427 1.00000 1686578 0.99954 0.00096 0.00030 0.64422 0.01198 1003 | HG01512 898429 1.00000 1582232 0.99948 0.00089 0.00027 0.63783 0.01361 1004 | NA18637 1042111 1.00000 1563914 0.99950 0.00114 0.00038 0.60011 0.01220 1005 | HG00231 915400 1.00000 1626430 0.99952 0.00082 0.00026 0.63987 0.01220 1006 | HG01369 985005 1.00000 1654621 0.99950 0.00091 0.00029 0.62684 0.01016 1007 | HG03563 974180 1.00000 1568972 0.99953 0.00208 0.00075 0.61694 0.01192 1008 | HG00626 1047903 1.00000 1548216 0.99946 0.00085 0.00027 0.59636 0.01330 1009 | HG03771 945569 1.00000 1679333 0.99944 0.00283 0.00100 0.63977 0.01212 1010 | HG03225 983748 1.00000 1563545 0.99952 0.00097 0.00034 0.61381 0.01259 1011 | HG03743 977684 1.00000 1617642 0.99950 0.00099 0.00032 0.62329 0.01208 1012 | NA12413 889159 1.00000 1540811 0.99954 0.00101 0.00031 0.63409 0.01312 1013 | HG00118 923564 1.00000 1657395 0.99961 0.00100 0.00031 0.64216 0.01099 1014 | HG03046 948315 1.00000 1550402 0.99952 0.00091 0.00032 0.62048 0.01434 1015 | HG02947 969024 1.00000 1577372 0.99947 0.00141 0.00053 0.61945 0.01334 1016 | HG03028 937044 1.00000 1520056 0.99947 0.00083 0.00027 0.61864 0.01481 1017 | HG02629 969314 1.00000 1579424 0.99952 0.00092 0.00031 0.61969 0.01294 1018 | NA20525 918307 1.00000 1631055 0.99956 0.00135 0.00041 0.63979 0.01140 1019 | HG01599 1044578 1.00000 1559020 0.99952 0.00085 0.00027 0.59879 0.01156 1020 | NA21098 926083 1.00000 1642399 0.99952 0.00110 0.00035 0.63944 0.01290 1021 | NA12718 910820 1.00000 1631889 0.99954 0.00127 0.00044 0.64179 0.01227 1022 | HG02690 982516 1.00000 1543389 0.99951 0.00196 0.00070 0.61102 0.01232 1023 | HG01530 908197 1.00000 1633042 0.99949 0.00094 0.00029 0.64262 0.01252 1024 | NA20804 892130 1.00000 1578129 0.99948 0.00129 0.00039 0.63885 0.01390 1025 | NA18864 962744 1.00000 1536881 0.99951 0.00077 0.00026 0.61484 0.01415 1026 | HG01678 901802 1.00000 1589931 0.99950 0.00085 0.00026 0.63808 0.01306 1027 | NA12400 941208 1.00000 1664656 0.99963 0.00113 0.00037 0.63881 0.00922 1028 | HG01047 890838 1.00000 1681882 0.99957 0.00090 0.00028 0.65374 0.01251 1029 | NA18624 1039524 1.00000 1529819 0.99940 0.00106 0.00033 0.59541 0.01431 1030 | HG03741 964518 1.00000 1633709 0.99953 0.00165 0.00057 0.62878 0.01142 1031 | NA19081 1034952 1.00000 1514494 0.99947 0.00094 0.00031 0.59405 0.01358 1032 | HG03115 942876 1.00000 1490423 0.99949 0.00116 0.00040 0.61251 0.01406 1033 | NA18945 1047062 1.00000 1527674 0.99943 0.00092 0.00029 0.59333 0.01259 1034 | NA21101 945144 1.00000 1711874 0.99958 0.00105 0.00032 0.64428 0.01009 1035 | NA18874 943748 1.00000 1546613 0.99951 0.00084 0.00027 0.62104 0.01368 1036 | HG03867 985774 1.00000 1566225 0.99959 0.00094 0.00030 0.61372 0.01195 1037 | NA20766 905811 1.00000 1607291 0.99956 0.00138 0.00042 0.63956 0.01229 1038 | HG01680 910816 1.00000 1591022 0.99950 0.00104 0.00034 0.63594 0.01328 1039 | HG04162 912225 1.00000 1651746 0.99950 0.00171 0.00056 0.64421 0.01281 1040 | NA18563 1035801 1.00000 1586374 0.99947 0.00096 0.00031 0.60498 0.01329 1041 | HG01242 886281 1.00000 1749628 0.99956 0.00090 0.00028 0.66377 0.01152 1042 | HG03978 941693 1.00000 1642845 0.99937 0.00278 0.00103 0.63564 0.01301 1043 | NA19651 892424 1.00000 1661746 0.99954 0.00075 0.00023 0.65060 0.01332 1044 | NA18879 1002913 1.00000 1613486 0.99954 0.00096 0.00032 0.61668 0.00989 1045 | HG01492 908956 1.00000 1676530 0.99951 0.00092 0.00029 0.64844 0.01273 1046 | NA20340 930967 1.00000 1691109 0.99950 0.00093 0.00030 0.64495 0.01212 1047 | HG03385 991367 1.00000 1560206 0.99954 0.00129 0.00047 0.61147 0.01261 1048 | HG00368 929695 1.00000 1625034 0.99951 0.00128 0.00039 0.63609 0.01204 1049 | NA19779 890582 1.00000 1678980 0.99955 0.00081 0.00025 0.65341 0.01447 1050 | HG00290 958346 1.00000 1652206 0.99959 0.00096 0.00031 0.63290 0.00863 1051 | NA18975 1035192 1.00000 1542909 0.99952 0.00102 0.00032 0.59847 0.01243 1052 | NA18984 1058664 1.00000 1500325 0.99949 0.00097 0.00032 0.58630 0.01245 1053 | HG01342 868972 1.00000 1757136 0.99954 0.00087 0.00027 0.66910 0.01283 1054 | HG01389 950659 1.00000 1554408 0.99955 0.00100 0.00032 0.62051 0.01233 1055 | HG01488 892091 1.00000 1728844 0.99955 0.00155 0.00053 0.65963 0.01162 1056 | HG00251 930416 1.00000 1670613 0.99958 0.00109 0.00034 0.64229 0.00989 1057 | HG03902 961773 1.00000 1729682 0.99957 0.00174 0.00059 0.64266 0.00915 1058 | NA19435 969884 1.00000 1604012 0.99953 0.00081 0.00027 0.62318 0.01270 1059 | HG00629 1082472 1.00000 1555254 0.99956 0.00090 0.00029 0.58962 0.00896 1060 | HG00531 1051498 1.00000 1537569 0.99948 0.00110 0.00036 0.59387 0.01179 1061 | HG03442 984691 1.00000 1585457 0.99949 0.00159 0.00059 0.61687 0.01286 1062 | NA18635 1045064 1.00000 1563631 0.99954 0.00134 0.00046 0.59939 0.01160 1063 | HG01102 906162 1.00000 1746788 0.99955 0.00086 0.00027 0.65843 0.01124 1064 | HG00110 949361 1.00000 1562114 0.99949 0.00080 0.00026 0.62199 0.01446 1065 | HG02047 1032211 1.00000 1563949 0.99953 0.00082 0.00026 0.60241 0.01176 1066 | HG03238 921016 1.00000 1687845 0.99951 0.00113 0.00037 0.64697 0.01261 1067 | HG00457 1051959 1.00000 1553522 0.99949 0.00094 0.00029 0.59625 0.01240 1068 | HG03491 934837 1.00000 1679220 0.99955 0.00159 0.00054 0.64238 0.01167 1069 | NA19652 904727 1.00000 1681770 0.99953 0.00079 0.00025 0.65021 0.01291 1070 | NA21092 917457 1.00000 1639211 0.99951 0.00095 0.00029 0.64115 0.01322 1071 | HG02382 1028422 1.00000 1527236 0.99946 0.00076 0.00024 0.59759 0.01408 1072 | NA20761 921889 1.00000 1633280 0.99958 0.00085 0.00026 0.63921 0.01181 1073 | HG01110 922057 1.00000 1714944 0.99949 0.00134 0.00040 0.65034 0.01150 1074 | NA19082 1034476 1.00000 1523151 0.99954 0.00079 0.00025 0.59553 0.01245 1075 | NA19404 968115 1.00000 1588684 0.99954 0.00079 0.00026 0.62136 0.01224 1076 | HG01440 904669 1.00000 1729399 0.99957 0.00082 0.00025 0.65655 0.01172 1077 | NA21127 941790 1.00000 1728880 0.99952 0.00104 0.00032 0.64736 0.01094 1078 | NA19917 944074 1.00000 1621533 0.99954 0.00089 0.00029 0.63203 0.01209 1079 | HG03789 928250 1.00000 1686860 0.99927 0.00564 0.00217 0.64504 0.01279 1080 | NA19070 1040444 1.00000 1549280 0.99947 0.00089 0.00028 0.59824 0.01261 1081 | NA19080 1053333 1.00000 1493101 0.99943 0.00086 0.00028 0.58635 0.01426 1082 | HG02410 1036244 1.00000 1540886 0.99945 0.00111 0.00035 0.59791 0.01322 1083 | HG02568 961404 1.00000 1542155 0.99945 0.00099 0.00035 0.61599 0.01434 1084 | HG03428 982394 1.00000 1573324 0.99945 0.00286 0.00111 0.61561 0.01209 1085 | NA11840 927583 1.00000 1622567 0.99950 0.00092 0.00029 0.63626 0.01167 1086 | NA19318 981838 1.00000 1619107 0.99959 0.00088 0.00028 0.62251 0.01090 1087 | HG00117 968366 1.00000 1610738 0.99955 0.00087 0.00027 0.62453 0.01003 1088 | HG00410 1040502 1.00000 1562146 0.99949 0.00092 0.00029 0.60021 0.01175 1089 | HG02095 957335 1.00000 1621785 0.99952 0.00131 0.00048 0.62881 0.01279 1090 | HG00473 1060782 1.00000 1572149 0.99948 0.00095 0.00030 0.59711 0.01212 1091 | HG03629 931472 1.00000 1680149 0.99958 0.00087 0.00028 0.64334 0.01188 1092 | NA18988 1045668 1.00000 1521241 0.99954 0.00095 0.00030 0.59264 0.01205 1093 | NA21099 939591 1.00000 1666811 0.99951 0.00095 0.00029 0.63951 0.01231 1094 | HG01137 932597 1.00000 1651207 0.99954 0.00093 0.00029 0.63906 0.01248 1095 | NA19403 959466 1.00000 1625170 0.99955 0.00095 0.00033 0.62878 0.01090 1096 | NA19785 982499 1.00000 1559069 0.99948 0.00106 0.00035 0.61343 0.01277 1097 | HG01885 967110 1.00000 1621429 0.99950 0.00077 0.00025 0.62639 0.01294 1098 | NA19777 921501 1.00000 1691941 0.99956 0.00107 0.00034 0.64740 0.01142 1099 | NA18646 998875 1.00000 1498278 0.99952 0.00125 0.00038 0.59999 0.01340 1100 | NA19072 1056916 1.00000 1556652 0.99949 0.00100 0.00032 0.59560 0.01195 1101 | HG02943 977431 1.00000 1552881 0.99950 0.00126 0.00045 0.61371 0.01298 1102 | HG02081 1022831 1.00000 1516143 0.99951 0.00095 0.00032 0.59715 0.01337 1103 | HG04062 955580 1.00000 1684648 0.99951 0.00183 0.00063 0.63807 0.01192 1104 | HG01536 918048 1.00000 1637730 0.99953 0.00086 0.00027 0.64080 0.01301 1105 | HG03022 1010760 1.00000 1551575 0.99953 0.00113 0.00037 0.60553 0.01164 1106 | HG03796 915816 1.00000 1689495 0.99942 0.00359 0.00130 0.64848 0.01311 1107 | HG02364 1043431 1.00000 1542519 0.99952 0.00097 0.00031 0.59650 0.01157 1108 | HG00382 919829 1.00000 1613874 0.99955 0.00085 0.00027 0.63696 0.01246 1109 | HG04099 931490 1.00000 1684066 0.99948 0.00281 0.00103 0.64387 0.01219 1110 | HG00674 1047844 1.00000 1545318 0.99951 0.00087 0.00027 0.59592 0.01233 1111 | NA20796 932172 1.00000 1625683 0.99955 0.00105 0.00033 0.63556 0.01161 1112 | HG00335 919072 1.00000 1622013 0.99957 0.00135 0.00041 0.63832 0.01217 1113 | NA20758 914656 1.00000 1636778 0.99957 0.00085 0.00026 0.64151 0.01259 1114 | NA06986 918159 1.00000 1598733 0.99956 0.00099 0.00031 0.63520 0.01187 1115 | HG01597 1048234 1.00000 1562119 0.99951 0.00083 0.00026 0.59843 0.01127 1116 | HG00380 919662 1.00000 1657416 0.99956 0.00088 0.00027 0.64314 0.01115 1117 | NA12144 903366 1.00000 1608839 0.99949 0.00136 0.00041 0.64041 0.01249 1118 | NA18582 1048489 1.00000 1550385 0.99950 0.00090 0.00029 0.59656 0.01207 1119 | NA20870 924093 1.00000 1671848 0.99955 0.00103 0.00032 0.64402 0.01254 1120 | HG01789 922309 1.00000 1627701 0.99907 0.00671 0.00262 0.63831 0.01348 1121 | NA18499 987087 1.00000 1590637 0.99946 0.00088 0.00029 0.61707 0.01272 1122 | NA18976 1045803 1.00000 1516630 0.99945 0.00089 0.00028 0.59187 0.01289 1123 | HG03757 914748 1.00000 1626766 0.99948 0.00247 0.00088 0.64008 0.01361 1124 | NA19076 1075127 1.00000 1550003 0.99953 0.00092 0.00030 0.59045 0.01034 1125 | HG02537 962716 1.00000 1618668 0.99951 0.00128 0.00045 0.62705 0.01240 1126 | HG00311 914064 1.00000 1615435 0.99956 0.00086 0.00027 0.63864 0.01167 1127 | HG02374 1045869 1.00000 1566565 0.99949 0.00099 0.00031 0.59966 0.01201 1128 | NA18606 1098538 1.00000 1503621 0.99945 0.00093 0.00030 0.57784 0.01040 1129 | HG00705 1011592 1.00000 1501811 0.99949 0.00082 0.00026 0.59752 0.01359 1130 | NA20515 907604 1.00000 1609723 0.99952 0.00078 0.00025 0.63946 0.01343 1131 | NA18505 998551 1.00000 1590758 0.99955 0.00134 0.00044 0.61436 0.01074 1132 | HG02655 977842 1.00000 1557520 0.99948 0.00105 0.00035 0.61432 0.01262 1133 | HG01119 918496 1.00000 1662015 0.99953 0.00083 0.00026 0.64406 0.01196 1134 | NA20754 924509 1.00000 1658514 0.99956 0.00127 0.00040 0.64208 0.01186 1135 | HG01853 1034967 1.00000 1550289 0.99951 0.00092 0.00029 0.59967 0.01244 1136 | NA20534 915800 1.00000 1610007 0.99951 0.00151 0.00047 0.63742 0.01263 1137 | NA20885 919752 1.00000 1649971 0.99952 0.00090 0.00028 0.64208 0.01297 1138 | HG01974 1072175 1.00000 1386157 0.99938 0.00082 0.00027 0.56386 0.01455 1139 | HG01325 904888 1.00000 1694688 0.99956 0.00101 0.00031 0.65191 0.01154 1140 | NA18954 1034309 1.00000 1559234 0.99953 0.00097 0.00030 0.60120 0.01184 1141 | HG03228 947297 1.00000 1583167 0.99947 0.00249 0.00088 0.62564 0.01351 1142 | NA21117 909824 1.00000 1645683 0.99956 0.00092 0.00028 0.64398 0.01281 1143 | NA21112 949146 1.00000 1682397 0.99953 0.00102 0.00031 0.63932 0.01123 1144 | HG02028 1014014 1.00000 1502486 0.99946 0.00087 0.00029 0.59705 0.01402 1145 | HG02107 989396 1.00000 1642020 0.99954 0.00098 0.00033 0.62401 0.00988 1146 | NA19712 927997 1.00000 1608226 0.99954 0.00081 0.00027 0.63410 0.01342 1147 | NA20882 935272 1.00000 1719110 0.99956 0.00142 0.00046 0.64765 0.01024 1148 | HG02409 1043618 1.00000 1540412 0.99947 0.00083 0.00027 0.59613 0.01266 1149 | HG03578 980269 1.00000 1578235 0.99945 0.00122 0.00043 0.61686 0.01309 1150 | NA18618 1053233 1.00000 1568391 0.99958 0.00081 0.00026 0.59825 0.01106 1151 | NA18636 1053905 1.00000 1577898 0.99948 0.00097 0.00031 0.59955 0.01170 1152 | HG03713 936090 1.00000 1668097 0.99960 0.00094 0.00029 0.64054 0.01181 1153 | HG04060 967867 1.00000 1707069 0.99956 0.00225 0.00079 0.63817 0.00938 1154 | HG01768 910718 1.00000 1646419 0.99954 0.00096 0.00030 0.64385 0.01184 1155 | NA18631 1036100 1.00000 1533131 0.99953 0.00107 0.00033 0.59673 0.01217 1156 | HG01874 1038279 1.00000 1552864 0.99947 0.00085 0.00027 0.59930 0.01314 1157 | NA19256 940530 1.00000 1524864 0.99949 0.00094 0.00031 0.61851 0.01485 1158 | HG01566 960770 1.00000 1639029 0.99954 0.00094 0.00029 0.63044 0.01091 1159 | HG00243 936964 1.00000 1670868 0.99951 0.00095 0.00030 0.64071 0.01009 1160 | HG00554 909892 1.00000 1695229 0.99959 0.00097 0.00030 0.65073 0.01074 1161 | HG01029 1065302 1.00000 1568992 0.99953 0.00099 0.00032 0.59560 0.00993 1162 | HG02348 1002045 1.00000 1437665 0.99948 0.00121 0.00043 0.58928 0.01333 1163 | NA18542 1022623 1.00000 1549898 0.99945 0.00121 0.00040 0.60248 0.01363 1164 | HG03397 961303 1.00000 1530719 0.99944 0.00313 0.00120 0.61425 0.01316 1165 | NA19746 997460 1.00000 1595286 0.99953 0.00142 0.00050 0.61529 0.01224 1166 | HG00321 966032 1.00000 1658800 0.99959 0.00097 0.00031 0.63196 0.00907 1167 | HG02108 935251 1.00000 1653976 0.99952 0.00077 0.00024 0.63879 0.01265 1168 | HG02266 1079694 1.00000 1432348 0.99945 0.00079 0.00026 0.57019 0.01238 1169 | NA12827 949900 1.00000 1674725 0.99957 0.00098 0.00031 0.63808 0.00845 1170 | NA18923 985470 1.00000 1580869 0.99954 0.00076 0.00025 0.61600 0.01239 1171 | HG00141 925508 1.00000 1632676 0.99955 0.00139 0.00042 0.63822 0.01196 1172 | HG03099 997759 1.00000 1571262 0.99948 0.00126 0.00045 0.61162 0.01269 1173 | NA19091 1063307 1.00000 1533914 0.99951 0.00094 0.00030 0.59060 0.01108 1174 | HG03108 1009772 1.00000 1596313 0.99952 0.00139 0.00050 0.61253 0.01019 1175 | NA19247 967439 1.00000 1530373 0.99953 0.00071 0.00024 0.61269 0.01375 1176 | HG03600 929323 1.00000 1636418 0.99948 0.00273 0.00099 0.63780 0.01323 1177 | HG03458 963722 1.00000 1539690 0.99947 0.00240 0.00092 0.61504 0.01313 1178 | NA19670 945145 1.00000 1659575 0.99954 0.00092 0.00029 0.63714 0.01155 1179 | NA20764 920512 1.00000 1615031 0.99955 0.00088 0.00027 0.63696 0.01220 1180 | NA12842 911216 1.00000 1628220 0.99954 0.00091 0.00028 0.64117 0.01212 1181 | HG01864 1036095 1.00000 1573182 0.99952 0.00094 0.00029 0.60292 0.01175 1182 | HG02232 921840 1.00000 1618042 0.99955 0.00164 0.00059 0.63705 0.01201 1183 | NA20849 947748 1.00000 1653369 0.99954 0.00106 0.00033 0.63564 0.01212 1184 | HG02813 957161 1.00000 1546068 0.99951 0.00145 0.00052 0.61763 0.01422 1185 | HG00613 1026228 1.00000 1536874 0.99947 0.00086 0.00027 0.59961 0.01251 1186 | HG00358 957312 1.00000 1634103 0.99953 0.00095 0.00030 0.63058 0.01097 1187 | HG00346 936948 1.00000 1561633 0.99953 0.00112 0.00035 0.62501 0.01301 1188 | HG00106 944996 1.00000 1654753 0.99957 0.00092 0.00029 0.63650 0.01052 1189 | HG00623 1070035 1.00000 1543297 0.99947 0.00083 0.00026 0.59055 0.01601 1190 | HG03303 971306 1.00000 1566393 0.99947 0.00193 0.00074 0.61725 0.01290 1191 | NA12273 932855 1.00000 1642719 0.99959 0.00095 0.00030 0.63781 0.01131 1192 | NA19086 1051242 1.00000 1546960 0.99956 0.00089 0.00028 0.59540 0.01113 1193 | HG00236 951931 1.00000 1641474 0.99956 0.00129 0.00040 0.63294 0.01024 1194 | NA19235 971135 1.00000 1551185 0.99952 0.00089 0.00030 0.61498 0.01267 1195 | NA19679 967216 1.00000 1536434 0.99953 0.00099 0.00031 0.61368 0.01245 1196 | HG00137 911203 1.00000 1626780 0.99953 0.00121 0.00039 0.64097 0.01128 1197 | HG00693 1032807 1.00000 1556325 0.99952 0.00092 0.00029 0.60110 0.01188 1198 | NA20334 879018 1.00000 1752740 0.99954 0.00095 0.00029 0.66600 0.01146 1199 | NA19011 1043708 1.00000 1562242 0.99952 0.00094 0.00030 0.59949 0.01249 1200 | HG01699 930195 1.00000 1611633 0.99953 0.00091 0.00029 0.63404 0.01182 1201 | HG02854 993315 1.00000 1589220 0.99954 0.00101 0.00034 0.61537 0.01152 1202 | HG04144 936536 1.00000 1689648 0.99950 0.00337 0.00124 0.64339 0.01173 1203 | NA07037 934966 1.00000 1640670 0.99951 0.00145 0.00049 0.63700 0.01141 1204 | HG02144 911973 1.00000 1566621 0.99954 0.00087 0.00029 0.63206 0.01405 1205 | NA20541 927270 1.00000 1622699 0.99954 0.00137 0.00042 0.63636 0.01169 1206 | HG01578 977489 1.00000 1629061 0.99956 0.00091 0.00029 0.62499 0.01112 1207 | NA19439 976776 1.00000 1595156 0.99960 0.00082 0.00027 0.62022 0.01084 1208 | HG01079 901791 1.00000 1697123 0.99957 0.00086 0.00027 0.65301 0.01158 1209 | HG00640 893629 1.00000 1660413 0.99954 0.00092 0.00028 0.65011 0.01250 1210 | HG03745 944965 1.00000 1596009 0.99954 0.00090 0.00028 0.62811 0.01306 1211 | NA18535 1009790 1.00000 1504562 0.99944 0.00077 0.00025 0.59839 0.01450 1212 | NA20812 933740 1.00000 1642073 0.99952 0.00100 0.00031 0.63750 0.01171 1213 | HG03886 910454 1.00000 1636959 0.99956 0.00102 0.00032 0.64260 0.01244 1214 | HG03594 932979 1.00000 1666353 0.99948 0.00160 0.00051 0.64107 0.01248 1215 | HG04061 962963 1.00000 1699472 0.99943 0.00497 0.00189 0.63831 0.01048 1216 | NA12749 887716 1.00000 1604271 0.99955 0.00120 0.00037 0.64377 0.01297 1217 | NA20535 921296 1.00000 1619873 0.99957 0.00133 0.00041 0.63745 0.01133 1218 | NA19121 960314 1.00000 1524428 0.99947 0.00080 0.00027 0.61352 0.01315 1219 | HG02882 984809 1.00000 1576416 0.99952 0.00107 0.00037 0.61549 0.01196 1220 | HG00188 916103 1.00000 1605885 0.99952 0.00083 0.00026 0.63675 0.01285 1221 | NA19819 911550 1.00000 1709092 0.99949 0.00146 0.00051 0.65217 0.01166 1222 | HG03126 991261 1.00000 1598252 0.99950 0.00160 0.00060 0.61720 0.01187 1223 | HG01506 917796 1.00000 1608305 0.99951 0.00084 0.00026 0.63667 0.01290 1224 | NA20765 897942 1.00000 1608453 0.99956 0.00143 0.00044 0.64174 0.01271 1225 | NA18974 1060638 1.00000 1574286 0.99952 0.00150 0.00047 0.59747 0.00990 1226 | HG01247 896630 1.00000 1722922 0.99955 0.00090 0.00028 0.65772 0.01183 1227 | HG00304 925464 1.00000 1642909 0.99957 0.00093 0.00029 0.63967 0.01129 1228 | HG00704 1024996 1.00000 1486238 0.99947 0.00075 0.00024 0.59184 0.01426 1229 | HG01705 908017 1.00000 1626596 0.99955 0.00089 0.00027 0.64175 0.01235 1230 | HG03105 1000234 1.00000 1556904 0.99935 0.00409 0.00163 0.60885 0.01229 1231 | HG01504 909849 1.00000 1615451 0.99947 0.00094 0.00029 0.63971 0.01340 1232 | HG00315 926030 1.00000 1606581 0.99954 0.00120 0.00037 0.63436 0.01260 1233 | NA21090 933313 1.00000 1667418 0.99955 0.00121 0.00037 0.64113 0.01231 1234 | HG02852 970564 1.00000 1530581 0.99954 0.00107 0.00036 0.61195 0.01388 1235 | HG00149 925583 1.00000 1630736 0.99957 0.00081 0.00026 0.63792 0.01178 1236 | HG00656 1041413 1.00000 1550027 0.99953 0.00092 0.00030 0.59813 0.01174 1237 | NA18523 983605 1.00000 1585333 0.99952 0.00086 0.00028 0.61712 0.01228 1238 | HG00148 898861 1.00000 1605712 0.99951 0.00075 0.00023 0.64111 0.01353 1239 | NA18571 1046042 1.00000 1547675 0.99951 0.00090 0.00029 0.59670 0.01141 1240 | HG03969 952543 1.00000 1690238 0.99953 0.00176 0.00058 0.63957 0.01105 1241 | HG02334 899427 1.00000 1713476 0.99956 0.00107 0.00034 0.65577 0.01175 1242 | NA19001 1042071 1.00000 1555363 0.99950 0.00089 0.00028 0.59881 0.01259 1243 | NA20581 935082 1.00000 1633069 0.99952 0.00130 0.00043 0.63589 0.01178 1244 | NA20296 894913 1.00000 1671513 0.99957 0.00091 0.00029 0.65130 0.01277 1245 | NA20815 910965 1.00000 1632631 0.99949 0.00082 0.00026 0.64186 0.01339 1246 | HG02642 987476 1.00000 1560727 0.99951 0.00132 0.00048 0.61248 0.01292 1247 | NA20888 947556 1.00000 1645015 0.99955 0.00096 0.00030 0.63451 0.01182 1248 | NA20519 929519 1.00000 1617035 0.99943 0.00207 0.00075 0.63499 0.01302 1249 | HG01121 907813 1.00000 1680881 0.99952 0.00096 0.00031 0.64932 0.01270 1250 | HG00272 959846 1.00000 1658860 0.99956 0.00093 0.00029 0.63347 0.00910 1251 | HG02895 1003829 1.00000 1599558 0.99953 0.00100 0.00033 0.61441 0.01158 1252 | NA19449 969086 1.00000 1589977 0.99955 0.00073 0.00024 0.62131 0.01261 1253 | NA20852 915166 1.00000 1640427 0.99948 0.00093 0.00028 0.64190 0.01369 1254 | HG01305 895714 1.00000 1734104 0.99955 0.00115 0.00036 0.65940 0.01151 1255 | HG03765 917006 1.00000 1689499 0.99957 0.00092 0.00029 0.64819 0.01204 1256 | NA19084 1059163 1.00000 1576378 0.99952 0.00098 0.00031 0.59812 0.01016 1257 | HG03439 990891 1.00000 1566873 0.99951 0.00103 0.00035 0.61259 0.01239 1258 | HG01191 907167 1.00000 1714008 0.99955 0.00104 0.00033 0.65391 0.01125 1259 | NA19152 990859 1.00000 1588817 0.99955 0.00090 0.00030 0.61590 0.01154 1260 | HG01771 930705 1.00000 1642106 0.99955 0.00100 0.00032 0.63825 0.01098 1261 | HG02391 1041500 1.00000 1499097 0.99953 0.00089 0.00028 0.59006 0.01299 1262 | NA20905 967770 1.00000 1715217 0.99958 0.00112 0.00035 0.63929 0.00817 1263 | NA21120 935008 1.00000 1695761 0.99952 0.00111 0.00034 0.64459 0.01102 1264 | HG03667 971528 1.00000 1649157 0.99952 0.00133 0.00045 0.62928 0.01121 1265 | HG01795 1064711 1.00000 1572186 0.99946 0.00088 0.00028 0.59623 0.01135 1266 | HG04173 938755 1.00000 1699662 0.99953 0.00128 0.00040 0.64420 0.01223 1267 | NA18944 1024850 1.00000 1501817 0.99943 0.00151 0.00056 0.59439 0.01352 1268 | HG01623 909514 1.00000 1627171 0.99954 0.00087 0.00027 0.64146 0.01269 1269 | HG01941 1037637 1.00000 1530632 0.99951 0.00088 0.00028 0.59598 0.01173 1270 | HG01048 918689 1.00000 1738518 0.99959 0.00117 0.00038 0.65427 0.00993 1271 | NA21119 926003 1.00000 1612797 0.99957 0.00116 0.00038 0.63526 0.01302 1272 | HG03695 964263 1.00000 1612725 0.99951 0.00095 0.00029 0.62582 0.01387 1273 | NA12830 889702 1.00000 1612144 0.99952 0.00099 0.00031 0.64438 0.01320 1274 | NA18924 983204 1.00000 1576888 0.99946 0.00103 0.00034 0.61595 0.01237 1275 | HG00268 918555 1.00000 1613627 0.99958 0.00093 0.00029 0.63725 0.01197 1276 | NA18856 974782 1.00000 1589876 0.99952 0.00084 0.00028 0.61992 0.01310 1277 | HG01334 917832 1.00000 1644346 0.99956 0.00085 0.00027 0.64178 0.01197 1278 | NA19467 969072 1.00000 1601906 0.99955 0.00085 0.00028 0.62307 0.01175 1279 | NA21105 948613 1.00000 1712986 0.99957 0.00102 0.00032 0.64359 0.00957 1280 | HG01094 891147 1.00000 1724504 0.99955 0.00093 0.00029 0.65930 0.01187 1281 | NA21126 936148 1.00000 1641196 0.99956 0.00107 0.00033 0.63678 0.01257 1282 | HG00183 939963 1.00000 1626827 0.99951 0.00083 0.00026 0.63380 0.01277 1283 | HG02291 1112439 1.00000 1370415 0.99941 0.00105 0.00038 0.55195 0.01361 1284 | HG03716 914009 1.00000 1672112 0.99933 0.00464 0.00172 0.64657 0.01381 1285 | NA19756 920388 1.00000 1662834 0.99959 0.00077 0.00024 0.64371 0.01262 1286 | HG01684 905075 1.00000 1621804 0.99953 0.00084 0.00026 0.64182 0.01309 1287 | HG02380 1086447 1.00000 1431430 0.99948 0.00112 0.00036 0.56851 0.01392 1288 | HG00126 948956 1.00000 1655691 0.99955 0.00144 0.00047 0.63567 0.00962 1289 | HG02165 1033010 1.00000 1551776 0.99948 0.00081 0.00026 0.60035 0.01235 1290 | NA18599 1054559 1.00000 1571910 0.99951 0.00101 0.00032 0.59849 0.01147 1291 | NA19037 993177 1.00000 1632040 0.99957 0.00088 0.00029 0.62168 0.01071 1292 | HG00610 1056136 1.00000 1543932 0.99947 0.00106 0.00034 0.59380 0.01190 1293 | HG04141 954716 1.00000 1720383 0.99954 0.00121 0.00037 0.64311 0.01036 1294 | HG00448 1056484 1.00000 1554178 0.99948 0.00125 0.00039 0.59532 0.01143 1295 | HG02406 1043880 1.00000 1527036 0.99952 0.00081 0.00026 0.59397 0.01278 1296 | NA19310 966295 1.00000 1574074 0.99955 0.00101 0.00033 0.61962 0.01242 1297 | HG03401 950561 1.00000 1516767 0.99945 0.00108 0.00038 0.61474 0.01540 1298 | NA18616 1034927 1.00000 1525334 0.99951 0.00088 0.00028 0.59577 0.01262 1299 | NA19466 958972 1.00000 1632262 0.99955 0.00085 0.00028 0.62992 0.01136 1300 | HG00257 932800 1.00000 1658195 0.99959 0.00104 0.00034 0.63998 0.01137 1301 | HG03018 942548 1.00000 1660872 0.99949 0.00135 0.00045 0.63796 0.01220 1302 | NA19471 977169 1.00000 1608367 0.99956 0.00076 0.00025 0.62206 0.01237 1303 | HG00114 939898 1.00000 1616774 0.99954 0.00086 0.00027 0.63237 0.01105 1304 | NA19248 1001524 1.00000 1579032 0.99958 0.00085 0.00029 0.61190 0.01106 1305 | NA20854 922734 1.00000 1703226 0.99957 0.00093 0.00029 0.64861 0.01129 1306 | NA11881 935260 1.00000 1626440 0.99959 0.00088 0.00027 0.63491 0.01173 1307 | HG03095 947704 1.00000 1523592 0.99933 0.00426 0.00167 0.61652 0.01430 1308 | NA18877 989377 1.00000 1567527 0.99950 0.00074 0.00025 0.61306 0.01297 1309 | NA18645 1048015 1.00000 1522952 0.99951 0.00095 0.00030 0.59237 0.01254 1310 | HG03884 953560 1.00000 1563202 0.99935 0.00415 0.00155 0.62112 0.01296 1311 | NA19036 1000926 1.00000 1637702 0.99961 0.00109 0.00036 0.62066 0.00840 1312 | HG03472 957817 1.00000 1546025 0.99943 0.00226 0.00086 0.61746 0.01450 1313 | HG03258 990036 1.00000 1598671 0.99952 0.00140 0.00051 0.61756 0.01084 1314 | NA18611 1046049 1.00000 1562862 0.99950 0.00100 0.00032 0.59905 0.01158 1315 | HG01790 923631 1.00000 1599859 0.99955 0.00093 0.00029 0.63399 0.01209 1316 | NA19360 961844 1.00000 1577756 0.99950 0.00079 0.00027 0.62126 0.01273 1317 | HG04080 959309 1.00000 1701094 0.99955 0.00118 0.00037 0.63941 0.01056 1318 | HG02685 966400 1.00000 1576120 0.99948 0.00200 0.00071 0.61990 0.01243 1319 | NA20877 939434 1.00000 1603876 0.99951 0.00130 0.00039 0.63063 0.01254 1320 | NA12812 936393 1.00000 1655686 0.99953 0.00099 0.00031 0.63875 0.01099 1321 | NA21104 934521 1.00000 1639733 0.99948 0.00092 0.00029 0.63697 0.01241 1322 | HG03268 979239 1.00000 1560108 0.99949 0.00104 0.00035 0.61437 0.01230 1323 | NA20792 927689 1.00000 1672267 0.99950 0.00096 0.00031 0.64319 0.01111 1324 | HG00353 914309 1.00000 1621836 0.99953 0.00087 0.00027 0.63949 0.01218 1325 | HG01375 894946 1.00000 1705400 0.99956 0.00092 0.00028 0.65584 0.01241 1326 | NA20810 929974 1.00000 1652394 0.99955 0.00107 0.00034 0.63988 0.01095 1327 | HG03229 964123 1.00000 1535497 0.99947 0.00130 0.00045 0.61429 0.01344 1328 | NA20805 941275 1.00000 1630298 0.99956 0.00087 0.00027 0.63397 0.01110 1329 | HG01775 938549 1.00000 1645234 0.99955 0.00097 0.00030 0.63675 0.01103 1330 | NA19075 1045836 1.00000 1546864 0.99947 0.00087 0.00028 0.59662 0.01277 1331 | HG01521 922346 1.00000 1586210 0.99955 0.00092 0.00028 0.63232 0.01266 1332 | NA19762 978135 1.00000 1705812 0.99951 0.00129 0.00043 0.63556 0.01004 1333 | HG02051 986566 1.00000 1604179 0.99955 0.00079 0.00027 0.61920 0.01158 1334 | HG03265 960202 1.00000 1543575 0.99948 0.00122 0.00040 0.61650 0.01416 1335 | HG02648 981577 1.00000 1572564 0.99951 0.00097 0.00031 0.61569 0.01174 1336 | HG04015 938538 1.00000 1643603 0.99953 0.00091 0.00029 0.63653 0.01359 1337 | NA11830 933307 1.00000 1644039 0.99950 0.00116 0.00037 0.63788 0.01182 1338 | HG01809 1052808 1.00000 1533134 0.99947 0.00094 0.00030 0.59287 0.01225 1339 | NA19117 962187 1.00000 1544184 0.99956 0.00080 0.00027 0.61610 0.01268 1340 | HG02427 947523 1.00000 1609339 0.99947 0.00230 0.00088 0.62942 0.01262 1341 | HG01779 939029 1.00000 1655335 0.99959 0.00091 0.00028 0.63805 0.01078 1342 | NA19397 979376 1.00000 1589393 0.99952 0.00081 0.00026 0.61874 0.01220 1343 | NA11829 937271 1.00000 1653755 0.99956 0.00094 0.00030 0.63826 0.00981 1344 | NA19474 971085 1.00000 1600551 0.99956 0.00074 0.00025 0.62239 0.01200 1345 | HG03973 931550 1.00000 1654431 0.99952 0.00115 0.00037 0.63977 0.01224 1346 | HG00525 1030730 1.00000 1495471 0.99952 0.00143 0.00045 0.59198 0.01265 1347 | NA19059 1042404 1.00000 1545094 0.99950 0.00096 0.00030 0.59714 0.01240 1348 | HG02301 1025648 1.00000 1511987 0.99948 0.00135 0.00049 0.59583 0.01252 1349 | NA20899 937367 1.00000 1661536 0.99953 0.00087 0.00027 0.63932 0.01271 1350 | NA19054 1040079 1.00000 1544945 0.99949 0.00084 0.00027 0.59765 0.01245 1351 | HG03977 927593 1.00000 1609070 0.99940 0.00179 0.00065 0.63433 0.01378 1352 | NA11893 927291 1.00000 1632387 0.99954 0.00123 0.00041 0.63773 0.01186 1353 | HG02691 962877 1.00000 1667430 0.99952 0.00125 0.00039 0.63393 0.01106 1354 | NA18986 1055251 1.00000 1579812 0.99946 0.00103 0.00033 0.59953 0.01175 1355 | HG02253 958611 1.00000 1617220 0.99947 0.00088 0.00028 0.62784 0.01253 1356 | HG00267 937617 1.00000 1634531 0.99955 0.00089 0.00028 0.63547 0.01139 1357 | HG00619 1057619 1.00000 1524842 0.99949 0.00096 0.00030 0.59046 0.01192 1358 | NA19707 877509 1.00000 1701517 0.99954 0.00072 0.00023 0.65975 0.01266 1359 | HG00657 1033219 1.00000 1528108 0.99947 0.00096 0.00030 0.59661 0.01399 1360 | HG00404 1020530 1.00000 1508326 0.99950 0.00079 0.00025 0.59645 0.01381 1361 | HG00344 926583 1.00000 1646246 0.99953 0.00090 0.00027 0.63986 0.01134 1362 | HG01816 1158798 1.00000 1352333 0.99943 0.00079 0.00026 0.53854 0.01260 1363 | NA21125 953597 1.00000 1674683 0.99955 0.00096 0.00030 0.63718 0.01152 1364 | HG02652 911321 1.00000 1700459 0.99957 0.00165 0.00055 0.65107 0.01192 1365 | HG00256 936315 1.00000 1621879 0.99954 0.00077 0.00024 0.63399 0.01221 1366 | HG03234 913964 1.00000 1687715 0.99956 0.00146 0.00045 0.64870 0.01278 1367 | NA18966 1045661 1.00000 1565455 0.99955 0.00093 0.00029 0.59953 0.01085 1368 | HG03788 958315 1.00000 1641923 0.99953 0.00110 0.00037 0.63145 0.01196 1369 | HG02973 960546 1.00000 1547829 0.99943 0.00173 0.00065 0.61706 0.01360 1370 | HG00132 928954 1.00000 1602645 0.99955 0.00079 0.00025 0.63306 0.01215 1371 | HG01967 962078 1.00000 1570369 0.99946 0.00081 0.00026 0.62010 0.01316 1372 | NA18969 1050797 1.00000 1540683 0.99947 0.00099 0.00031 0.59452 0.01259 1373 | HG02787 977476 1.00000 1657378 0.99949 0.00165 0.00057 0.62902 0.01063 1374 | HG00365 921454 1.00000 1647835 0.99957 0.00089 0.00027 0.64136 0.01173 1375 | HG01486 912722 1.00000 1655635 0.99953 0.00095 0.00029 0.64463 0.01230 1376 | HG03451 981527 1.00000 1549993 0.99950 0.00178 0.00067 0.61228 0.01244 1377 | HG01673 919219 1.00000 1605156 0.99954 0.00095 0.00029 0.63586 0.01212 1378 | NA18907 985666 1.00000 1574259 0.99953 0.00088 0.00029 0.61496 0.01296 1379 | HG04182 927476 1.00000 1673473 0.99948 0.00212 0.00073 0.64341 0.01233 1380 | HG01761 910988 1.00000 1630089 0.99955 0.00098 0.00030 0.64150 0.01254 1381 | HG01438 944110 1.00000 1607047 0.99948 0.00089 0.00028 0.62993 0.01189 1382 | HG02798 991547 1.00000 1599161 0.99950 0.00136 0.00048 0.61727 0.01095 1383 | NA19904 908664 1.00000 1649704 0.99955 0.00076 0.00024 0.64483 0.01372 1384 | HG02763 1029352 1.00000 1534292 0.99949 0.00134 0.00047 0.59848 0.01108 1385 | NA20768 911486 1.00000 1606993 0.99953 0.00130 0.00040 0.63808 0.01275 1386 | NA19658 923567 1.00000 1677168 0.99956 0.00085 0.00027 0.64488 0.01199 1387 | HG00328 928014 1.00000 1591332 0.99952 0.00124 0.00038 0.63164 0.01247 1388 | HG00584 1051456 1.00000 1585007 0.99954 0.00114 0.00036 0.60119 0.01029 1389 | HG01393 856235 1.00000 1719044 0.99954 0.00081 0.00025 0.66752 0.01245 1390 | HG04186 958423 1.00000 1680744 0.99952 0.00116 0.00036 0.63685 0.01119 1391 | NA18615 1049338 1.00000 1545032 0.99951 0.00090 0.00028 0.59553 0.01250 1392 | NA19394 967700 1.00000 1606328 0.99956 0.00072 0.00024 0.62405 0.01238 1393 | NA20911 924292 1.00000 1651678 0.99954 0.00097 0.00030 0.64119 0.01256 1394 | HG02574 950080 1.00000 1574741 0.99948 0.00103 0.00035 0.62370 0.01328 1395 | HG03770 953675 1.00000 1609377 0.99952 0.00157 0.00055 0.62791 0.01270 1396 | HG03826 920748 1.00000 1651989 0.99937 0.00383 0.00144 0.64211 0.01342 1397 | HG03926 918538 1.00000 1666850 0.99951 0.00211 0.00076 0.64472 0.01309 1398 | HG04022 951950 1.00000 1680145 0.99951 0.00203 0.00071 0.63833 0.01099 1399 | NA20412 915716 1.00000 1722343 0.99957 0.00094 0.00031 0.65288 0.01087 1400 | HG02121 997437 1.00000 1540799 0.99944 0.00078 0.00025 0.60704 0.01456 1401 | NA19770 912384 1.00000 1675475 0.99953 0.00081 0.00025 0.64744 0.01290 1402 | HG03803 903119 1.00000 1627200 0.99949 0.00193 0.00065 0.64308 0.01366 1403 | HG01600 1046208 1.00000 1566601 0.99952 0.00090 0.00028 0.59958 0.01224 1404 | NA20803 933990 1.00000 1635810 0.99953 0.00087 0.00027 0.63655 0.01202 1405 | HG02879 982773 1.00000 1562353 0.99953 0.00091 0.00030 0.61386 0.01260 1406 | HG02541 923462 1.00000 1675764 0.99951 0.00093 0.00031 0.64472 0.01263 1407 | HG04235 952303 1.00000 1689206 0.99954 0.00118 0.00036 0.63949 0.01042 1408 | HG03790 938266 1.00000 1659077 0.99950 0.00097 0.00032 0.63876 0.01235 1409 | HG02727 944389 1.00000 1670610 0.99949 0.00344 0.00127 0.63886 0.01177 1410 | NA18629 1063545 1.00000 1586869 0.99952 0.00095 0.00030 0.59872 0.00969 1411 | HG03925 953219 1.00000 1713960 0.99951 0.00149 0.00051 0.64261 0.01080 1412 | HG03793 915633 1.00000 1632013 0.99949 0.00094 0.00029 0.64060 0.01304 1413 | HG02771 983060 1.00000 1562234 0.99953 0.00093 0.00031 0.61377 0.01230 1414 | HG03785 947648 1.00000 1605149 0.99954 0.00091 0.00028 0.62878 0.01248 1415 | NA18572 1069379 1.00000 1580578 0.99957 0.00107 0.00034 0.59645 0.00948 1416 | HG01672 918146 1.00000 1622106 0.99957 0.00093 0.00029 0.63856 0.01241 1417 | HG00331 926808 1.00000 1641732 0.99953 0.00108 0.00035 0.63917 0.01153 1418 | HG00731 901777 1.00000 1655455 0.99958 0.00097 0.00032 0.64736 0.01276 1419 | NA19023 975697 1.00000 1588323 0.99958 0.00105 0.00034 0.61947 0.01183 1420 | HG01509 896281 1.00000 1618611 0.99950 0.00094 0.00029 0.64361 0.01335 1421 | HG02006 875283 1.00000 1817917 0.99959 0.00097 0.00031 0.67500 0.01096 1422 | NA18971 1045849 1.00000 1539764 0.99949 0.00107 0.00034 0.59551 0.01208 1423 | NA21130 949187 1.00000 1630431 0.99954 0.00092 0.00029 0.63204 0.01254 1424 | HG02464 966781 1.00000 1519631 0.99949 0.00156 0.00058 0.61117 0.01360 1425 | HG00244 930073 1.00000 1654304 0.99951 0.00117 0.00036 0.64012 0.01111 1426 | HG02147 1075929 1.00000 1435635 0.99949 0.00087 0.00029 0.57161 0.01226 1427 | HG01927 1086759 1.00000 1447349 0.99949 0.00086 0.00028 0.57115 0.01172 1428 | HG01112 931150 1.00000 1639348 0.99953 0.00085 0.00027 0.63776 0.01204 1429 | NA20762 956211 1.00000 1655580 0.99962 0.00113 0.00036 0.63389 0.00810 1430 | HG02282 914754 1.00000 1692789 0.99958 0.00116 0.00038 0.64919 0.01132 1431 | HG02601 919622 1.00000 1668490 0.99951 0.00119 0.00040 0.64467 0.01309 1432 | HG01124 897393 1.00000 1731336 0.99954 0.00097 0.00030 0.65862 0.01159 1433 | HG01550 906138 1.00000 1670390 0.99951 0.00092 0.00028 0.64831 0.01285 1434 | HG04063 964695 1.00000 1625202 0.99950 0.00168 0.00058 0.62752 0.01230 1435 | NA20903 945921 1.00000 1679141 0.99955 0.00087 0.00027 0.63966 0.01119 1436 | HG02140 1042562 1.00000 1559488 0.99945 0.00078 0.00025 0.59933 0.01336 1437 | HG01800 1065155 1.00000 1483178 0.99943 0.00091 0.00029 0.58202 0.01323 1438 | HG02053 938513 1.00000 1598717 0.99953 0.00089 0.00031 0.63010 0.01332 1439 | NA18979 1053478 1.00000 1576982 0.99949 0.00101 0.00032 0.59951 0.01146 1440 | HG00419 1039287 1.00000 1552154 0.99950 0.00095 0.00031 0.59895 0.01215 1441 | HG01977 1006556 1.00000 1481492 0.99942 0.00109 0.00038 0.59544 0.01444 1442 | NA20847 925590 1.00000 1638027 0.99949 0.00113 0.00037 0.63895 0.01262 1443 | NA20513 912196 1.00000 1628904 0.99948 0.00148 0.00045 0.64102 0.01239 1444 | NA20355 914575 1.00000 1676919 0.99957 0.00134 0.00042 0.64709 0.01153 1445 | HG00622 1033380 1.00000 1526813 0.99947 0.00090 0.00028 0.59637 0.01356 1446 | HG02256 888806 1.00000 1674853 0.99953 0.00086 0.00029 0.65331 0.01285 1447 | NA21086 942974 1.00000 1708738 0.99956 0.00137 0.00041 0.64439 0.01006 1448 | HG02923 982284 1.00000 1561531 0.99946 0.00120 0.00042 0.61385 0.01264 1449 | NA18623 1039386 1.00000 1555746 0.99951 0.00127 0.00043 0.59949 0.01240 1450 | HG00308 920789 1.00000 1604128 0.99953 0.00113 0.00034 0.63532 0.01197 1451 | HG02131 1009645 1.00000 1590897 0.99948 0.00110 0.00034 0.61176 0.01319 1452 | HG03558 982268 1.00000 1562084 0.99951 0.00107 0.00037 0.61394 0.01316 1453 | HG02944 994162 1.00000 1591792 0.99955 0.00136 0.00049 0.61555 0.01062 1454 | HG03663 929670 1.00000 1682800 0.99956 0.00147 0.00051 0.64414 0.01186 1455 | NA19835 950269 1.00000 1721091 0.99956 0.00112 0.00038 0.64428 0.00972 1456 | HG03300 992891 1.00000 1559032 0.99950 0.00196 0.00072 0.61092 0.01279 1457 | HG02583 1018161 1.00000 1591439 0.99951 0.00166 0.00061 0.60984 0.01051 1458 | HG02725 956799 1.00000 1676751 0.99952 0.00124 0.00040 0.63669 0.01103 1459 | NA19713 895394 1.00000 1703996 0.99956 0.00092 0.00029 0.65554 0.01229 1460 | HG01104 890419 1.00000 1691911 0.99953 0.00085 0.00026 0.65519 0.01354 1461 | HG03301 982084 1.00000 1568999 0.99946 0.00130 0.00047 0.61503 0.01282 1462 | HG03702 928239 1.00000 1718656 0.99952 0.00092 0.00029 0.64931 0.01195 1463 | NA20795 927880 1.00000 1647473 0.99954 0.00102 0.00032 0.63971 0.01179 1464 | HG02971 971276 1.00000 1564502 0.99946 0.00130 0.00046 0.61697 0.01279 1465 | NA19749 898591 1.00000 1626148 0.99955 0.00081 0.00025 0.64409 0.01350 1466 | HG00271 934592 1.00000 1653681 0.99956 0.00096 0.00030 0.63891 0.01094 1467 | HG02182 1054319 1.00000 1539207 0.99940 0.00227 0.00086 0.59348 0.01205 1468 | HG02597 934558 1.00000 1653066 0.99953 0.00107 0.00035 0.63884 0.01240 1469 | HG00263 906148 1.00000 1592316 0.99952 0.00094 0.00029 0.63732 0.01310 1470 | HG01953 1078120 1.00000 1462421 0.99946 0.00107 0.00036 0.57563 0.01163 1471 | NA12005 904108 1.00000 1581597 0.99955 0.00097 0.00030 0.63628 0.01259 1472 | HG03875 1001206 1.00000 1614452 0.99944 0.00472 0.00183 0.61723 0.01103 1473 | NA12383 933616 1.00000 1638711 0.99957 0.00080 0.00026 0.63705 0.01191 1474 | HG02060 1039148 1.00000 1533102 0.99951 0.00077 0.00025 0.59602 0.01188 1475 | HG01088 884893 1.00000 1757954 0.99957 0.00093 0.00028 0.66517 0.01087 1476 | NA19429 967732 1.00000 1608486 0.99952 0.00071 0.00023 0.62436 0.01263 1477 | NA19913 926136 1.00000 1641235 0.99954 0.00073 0.00024 0.63927 0.01281 1478 | HG00556 1008612 1.00000 1488332 0.99945 0.00082 0.00026 0.59606 0.01384 1479 | NA19451 988555 1.00000 1599328 0.99948 0.00080 0.00026 0.61801 0.01263 1480 | NA20540 907510 1.00000 1611191 0.99952 0.00137 0.00043 0.63969 0.01232 1481 | HG01932 1031564 1.00000 1504608 0.99950 0.00081 0.00026 0.59326 0.01306 1482 | HG04164 944866 1.00000 1733203 0.99948 0.00344 0.00126 0.64718 0.00990 1483 | NA07357 906117 1.00000 1588175 0.99953 0.00093 0.00029 0.63672 0.01293 1484 | NA19461 980084 1.00000 1608403 0.99957 0.00072 0.00024 0.62137 0.01173 1485 | NA20884 931971 1.00000 1629408 0.99955 0.00137 0.00041 0.63614 0.01263 1486 | HG03006 950072 1.00000 1736617 0.99956 0.00137 0.00043 0.64638 0.00985 1487 | HG00651 1051592 1.00000 1544443 0.99950 0.00082 0.00026 0.59492 0.01198 1488 | NA21124 927133 1.00000 1665109 0.99950 0.00109 0.00034 0.64234 0.01210 1489 | HG02768 996776 1.00000 1587179 0.99946 0.00285 0.00108 0.61424 0.01154 1490 | NA19095 970773 1.00000 1516253 0.99950 0.00084 0.00028 0.60967 0.01279 1491 | NA18608 1031087 1.00000 1534642 0.99947 0.00113 0.00037 0.59813 0.01202 1492 | NA21100 920739 1.00000 1617413 0.99947 0.00139 0.00042 0.63724 0.01313 1493 | HG03166 985878 1.00000 1541217 0.99955 0.00140 0.00050 0.60988 0.01249 1494 | HG02396 1050516 1.00000 1521102 0.99952 0.00093 0.00031 0.59150 0.01196 1495 | HG01873 1043465 1.00000 1540948 0.99956 0.00089 0.00029 0.59625 0.01178 1496 | HG03965 953949 1.00000 1683957 0.99949 0.00297 0.00108 0.63837 0.01103 1497 | HG01107 893388 1.00000 1758328 0.99955 0.00078 0.00024 0.66309 0.01200 1498 | HG01802 1034310 1.00000 1568515 0.99949 0.00091 0.00029 0.60262 0.01263 1499 | HG02555 958755 1.00000 1652895 0.99954 0.00082 0.00027 0.63289 0.01192 1500 | NA12776 918745 1.00000 1657431 0.99952 0.00107 0.00035 0.64337 0.01125 1501 | HG03636 919986 1.00000 1679702 0.99950 0.00170 0.00054 0.64612 0.01169 1502 | NA19088 1051791 1.00000 1550386 0.99950 0.00116 0.00036 0.59580 0.01131 1503 | HG00140 923874 1.00000 1633532 0.99952 0.00077 0.00024 0.63875 0.01272 1504 | NA18609 1044062 1.00000 1554894 0.99956 0.00108 0.00034 0.59828 0.01177 1505 | NA12748 919713 1.00000 1659060 0.99955 0.00098 0.00031 0.64335 0.01262 1506 | NA07000 925973 1.00000 1664269 0.99956 0.00100 0.00031 0.64251 0.01037 1507 | NA19026 955298 1.00000 1571292 0.99952 0.00142 0.00045 0.62190 0.01358 1508 | HG01111 865164 1.00000 1673836 0.99954 0.00110 0.00033 0.65925 0.01366 1509 | NA19009 1059474 1.00000 1571673 0.99952 0.00131 0.00043 0.59733 0.01099 1510 | NA20508 912677 1.00000 1602448 0.99952 0.00133 0.00041 0.63712 0.01251 1511 | HG02088 1046659 1.00000 1559758 0.99947 0.00080 0.00025 0.59843 0.01228 1512 | NA18622 1038923 1.00000 1550179 0.99955 0.00089 0.00028 0.59873 0.01112 1513 | HG02512 1064715 1.00000 1521701 0.99945 0.00086 0.00028 0.58834 0.01262 1514 | HG03100 994654 1.00000 1569711 0.99951 0.00169 0.00064 0.61212 0.01191 1515 | HG04216 957596 1.00000 1690500 0.99953 0.00172 0.00058 0.63838 0.01140 1516 | HG02397 1032812 1.00000 1504966 0.99948 0.00078 0.00025 0.59303 0.01552 1517 | HG03684 966946 1.00000 1641430 0.99953 0.00107 0.00036 0.62929 0.01266 1518 | HG00313 939276 1.00000 1649307 0.99948 0.00110 0.00034 0.63715 0.01120 1519 | HG02733 920891 1.00000 1673312 0.99942 0.00373 0.00138 0.64502 0.01247 1520 | NA21141 959448 1.00000 1659605 0.99948 0.00126 0.00039 0.63367 0.01149 1521 | HG02399 1024500 1.00000 1532048 0.99951 0.00076 0.00025 0.59926 0.01375 1522 | NA20904 923847 1.00000 1725714 0.99957 0.00088 0.00027 0.65132 0.01026 1523 | HG01746 927615 1.00000 1646360 0.99959 0.00089 0.00028 0.63962 0.01150 1524 | HG03114 979198 1.00000 1544480 0.99949 0.00134 0.00046 0.61200 0.01314 1525 | HG02113 1028016 1.00000 1528881 0.99950 0.00086 0.00029 0.59794 0.01287 1526 | NA19143 970226 1.00000 1551507 0.99957 0.00079 0.00026 0.61525 0.01285 1527 | HG02600 941941 1.00000 1697705 0.99949 0.00198 0.00070 0.64316 0.01195 1528 | NA19676 909271 1.00000 1671687 0.99953 0.00086 0.00027 0.64770 0.01332 1529 | NA21115 954745 1.00000 1689383 0.99962 0.00101 0.00032 0.63892 0.00920 1530 | HG00367 915994 1.00000 1636379 0.99953 0.00140 0.00042 0.64112 0.01188 1531 | NA18908 978599 1.00000 1566877 0.99950 0.00070 0.00024 0.61555 0.01366 1532 | HG02284 914123 1.00000 1666037 0.99955 0.00099 0.00032 0.64571 0.01215 1533 | NA19078 1061243 1.00000 1533284 0.99951 0.00146 0.00045 0.59097 0.01156 1534 | NA20281 907223 1.00000 1637874 0.99949 0.00086 0.00027 0.64354 0.01343 1535 | HG01866 1039953 1.00000 1535214 0.99948 0.00095 0.00030 0.59616 0.01268 1536 | NA19390 965751 1.00000 1573580 0.99951 0.00104 0.00034 0.61968 0.01280 1537 | HG00378 941448 1.00000 1625025 0.99954 0.00118 0.00036 0.63317 0.01099 1538 | HG01813 1052722 1.00000 1537470 0.99952 0.00205 0.00073 0.59357 0.01120 1539 | HG03074 974242 1.00000 1532448 0.99945 0.00106 0.00035 0.61134 0.01349 1540 | HG00366 897997 1.00000 1574783 0.99948 0.00133 0.00045 0.63685 0.01336 1541 | NA20289 938183 1.00000 1706744 0.99958 0.00083 0.00027 0.64529 0.01090 1542 | HG02981 968491 1.00000 1571802 0.99952 0.00147 0.00054 0.61875 0.01286 1543 | HG01670 916220 1.00000 1588793 0.99949 0.00097 0.00031 0.63425 0.01358 1544 | NA19379 977676 1.00000 1614147 0.99947 0.00085 0.00028 0.62278 0.01174 1545 | NA19171 959510 1.00000 1527024 0.99953 0.00112 0.00039 0.61412 0.01351 1546 | NA20759 928165 1.00000 1658449 0.99949 0.00145 0.00049 0.64117 0.01269 1547 | HG01125 908135 1.00000 1717023 0.99954 0.00116 0.00036 0.65406 0.01202 1548 | NA20532 907393 1.00000 1614593 0.99953 0.00141 0.00043 0.64021 0.01300 1549 | NA19077 1042049 1.00000 1544244 0.99949 0.00094 0.00030 0.59709 0.01251 1550 | NA19794 945605 1.00000 1664879 0.99955 0.00088 0.00028 0.63777 0.01089 1551 | HG02075 1023965 1.00000 1570885 0.99950 0.00080 0.00025 0.60539 0.01255 1552 | HG02646 977873 1.00000 1574410 0.99950 0.00091 0.00031 0.61686 0.01253 1553 | NA07048 928099 1.00000 1633864 0.99949 0.00097 0.00031 0.63774 0.01253 1554 | NA19043 987089 1.00000 1617980 0.99954 0.00125 0.00040 0.62109 0.01042 1555 | NA19004 1042897 1.00000 1538665 0.99951 0.00105 0.00033 0.59602 0.01231 1556 | NA19377 975751 1.00000 1601129 0.99954 0.00078 0.00026 0.62134 0.01192 1557 | NA19019 993976 1.00000 1602034 0.99956 0.00093 0.00031 0.61711 0.01173 1558 | HG03858 1001470 1.00000 1535004 0.99929 0.00374 0.00141 0.60517 0.01411 1559 | HG03911 951577 1.00000 1675653 0.99955 0.00134 0.00045 0.63780 0.01231 1560 | HG03898 994662 1.00000 1613091 0.99930 0.00718 0.00286 0.61858 0.01132 1561 | HG01064 891698 1.00000 1721346 0.99948 0.00087 0.00027 0.65875 0.01227 1562 | NA19374 988186 1.00000 1665582 0.99971 0.00101 0.00033 0.62763 0.00751 1563 | HG00242 938083 1.00000 1668659 0.99952 0.00128 0.00040 0.64013 0.01052 1564 | HG03752 972002 1.00000 1578427 0.99952 0.00091 0.00029 0.61889 0.01295 1565 | NA12156 942411 1.00000 1656850 0.99955 0.00096 0.00030 0.63743 0.01126 1566 | HG02577 944480 1.00000 1702434 0.99955 0.00136 0.00045 0.64318 0.01128 1567 | HG02891 967850 1.00000 1580853 0.99952 0.00092 0.00031 0.62026 0.01204 1568 | NA20775 925528 1.00000 1652337 0.99955 0.00088 0.00027 0.64097 0.01160 1569 | NA19661 924575 1.00000 1657340 0.99949 0.00107 0.00035 0.64190 0.01296 1570 | NA19185 992404 1.00000 1610720 0.99949 0.00084 0.00028 0.61876 0.01138 1571 | HG01950 1018150 1.00000 1490143 0.99943 0.00091 0.00030 0.59409 0.01350 1572 | HG02645 976597 1.00000 1576534 0.99955 0.00099 0.00034 0.61749 0.01187 1573 | NA12815 942562 1.00000 1648203 0.99949 0.00100 0.00031 0.63618 0.01152 1574 | NA18596 1031733 1.00000 1500449 0.99944 0.00132 0.00044 0.59255 0.01359 1575 | HG02484 934222 1.00000 1665097 0.99954 0.00105 0.00036 0.64059 0.01183 1576 | HG02476 936186 1.00000 1688342 0.99952 0.00264 0.00101 0.64329 0.01150 1577 | NA20773 924672 1.00000 1617073 0.99954 0.00092 0.00029 0.63621 0.01182 1578 | HG02462 977015 1.00000 1608896 0.99952 0.00127 0.00046 0.62218 0.01209 1579 | HG03940 930820 1.00000 1635293 0.99956 0.00099 0.00031 0.63726 0.01325 1580 | HG00559 1049094 1.00000 1534926 0.99947 0.00081 0.00026 0.59401 0.01347 1581 | HG01345 908962 1.00000 1698296 0.99951 0.00086 0.00027 0.65137 0.01224 1582 | HG01052 877272 1.00000 1746673 0.99950 0.00108 0.00033 0.66567 0.01250 1583 | HG01459 904418 1.00000 1693567 0.99951 0.00093 0.00028 0.65188 0.01275 1584 | HG01773 901070 1.00000 1630703 0.99953 0.00098 0.00030 0.64410 0.01274 1585 | NA19038 981448 1.00000 1596083 0.99947 0.00107 0.00035 0.61923 0.01210 1586 | HG02122 1032998 1.00000 1559150 0.99943 0.00081 0.00026 0.60149 0.01305 1587 | NA19027 983032 1.00000 1612909 0.99955 0.00099 0.00032 0.62132 0.01102 1588 | HG00698 1064562 1.00000 1565906 0.99949 0.00088 0.00028 0.59530 0.01091 1589 | HG01880 850512 1.00000 1773313 0.99955 0.00082 0.00026 0.67585 0.01282 1590 | HG00421 1058412 1.00000 1527011 0.99943 0.00095 0.00030 0.59062 0.01256 1591 | HG03919 947736 1.00000 1716805 0.99955 0.00191 0.00065 0.64432 0.00961 1592 | NA18526 1053832 1.00000 1562228 0.99952 0.00095 0.00030 0.59717 0.01190 1593 | HG02190 1035457 1.00000 1563036 0.99945 0.00084 0.00027 0.60152 0.01322 1594 | NA18511 999830 1.00000 1621632 0.99951 0.00092 0.00031 0.61860 0.01080 1595 | HG04155 946856 1.00000 1693541 0.99947 0.00308 0.00113 0.64140 0.01179 1596 | HG04212 980366 1.00000 1647646 0.99954 0.00271 0.00099 0.62696 0.00971 1597 | NA12489 928219 1.00000 1616427 0.99954 0.00087 0.00027 0.63523 0.01236 1598 | NA21113 934183 1.00000 1634183 0.99959 0.00089 0.00028 0.63627 0.01291 1599 | NA19207 990678 1.00000 1590068 0.99946 0.00192 0.00074 0.61613 0.01219 1600 | HG00381 937887 1.00000 1621235 0.99959 0.00089 0.00028 0.63351 0.01106 1601 | HG01134 914750 1.00000 1719560 0.99952 0.00093 0.00029 0.65276 0.01078 1602 | HG03168 987514 1.00000 1575130 0.99958 0.00103 0.00035 0.61465 0.01099 1603 | HG04239 902296 1.00000 1654463 0.99950 0.00120 0.00036 0.64709 0.01350 1604 | HG04098 930428 1.00000 1687778 0.99950 0.00242 0.00086 0.64463 0.01153 1605 | HG03646 926119 1.00000 1656903 0.99959 0.00160 0.00050 0.64146 0.01162 1606 | HG03452 1000273 1.00000 1604089 0.99950 0.00136 0.00047 0.61592 0.01005 1607 | HG02299 1054952 1.00000 1451780 0.99945 0.00102 0.00034 0.57915 0.01272 1608 | NA11920 927288 1.00000 1618508 0.99949 0.00125 0.00043 0.63576 0.01345 1609 | NA19042 981091 1.00000 1637470 0.99958 0.00107 0.00035 0.62533 0.00991 1610 | HG02799 964863 1.00000 1564914 0.99952 0.00140 0.00048 0.61860 0.01285 1611 | NA19190 1008482 1.00000 1608574 0.99954 0.00086 0.00028 0.61465 0.01060 1612 | HG00740 901031 1.00000 1714780 0.99957 0.00085 0.00026 0.65554 0.01262 1613 | HG01841 1039981 1.00000 1535204 0.99953 0.00093 0.00030 0.59615 0.01221 1614 | HG04075 964380 1.00000 1643889 0.99951 0.00238 0.00084 0.63026 0.01162 1615 | HG02786 964762 1.00000 1657121 0.99955 0.00134 0.00043 0.63203 0.01088 1616 | NA18740 1050846 1.00000 1550577 0.99942 0.00128 0.00042 0.59605 0.01255 1617 | HG03896 1009647 1.00000 1490260 0.99943 0.00264 0.00100 0.59613 0.01321 1618 | HG02554 961256 1.00000 1667846 0.99948 0.00116 0.00041 0.63438 0.01154 1619 | NA19446 981481 1.00000 1596233 0.99955 0.00082 0.00028 0.61924 0.01250 1620 | NA19740 982832 1.00000 1567149 0.99947 0.00083 0.00027 0.61457 0.01348 1621 | HG02789 895388 1.00000 1598982 0.99918 0.00103 0.00032 0.64104 0.02164 1622 | HG02215 930975 1.00000 1611490 0.99956 0.00094 0.00030 0.63383 0.01113 1623 | HG03066 985127 1.00000 1578862 0.99954 0.00071 0.00024 0.61578 0.01191 1624 | NA18967 1056208 1.00000 1552707 0.99949 0.00107 0.00034 0.59515 0.01171 1625 | HG03817 966811 1.00000 1651524 0.99945 0.00312 0.00116 0.63075 0.01156 1626 | NA20856 924119 1.00000 1674007 0.99950 0.00152 0.00052 0.64431 0.01239 1627 | HG02330 924319 1.00000 1631385 0.99949 0.00108 0.00035 0.63833 0.01393 1628 | HG02332 949665 1.00000 1639869 0.99959 0.00114 0.00037 0.63327 0.01123 1629 | NA12003 926784 1.00000 1655353 0.99950 0.00097 0.00031 0.64108 0.01085 1630 | NA20861 945482 1.00000 1624793 0.99955 0.00081 0.00025 0.63215 0.01335 1631 | HG03235 942741 1.00000 1718456 0.99960 0.00130 0.00043 0.64575 0.01081 1632 | HG00103 931112 1.00000 1619231 0.99960 0.00084 0.00026 0.63491 0.01170 1633 | HG02455 935307 1.00000 1660308 0.99951 0.00211 0.00078 0.63966 0.01166 1634 | HG04025 997720 1.00000 1617831 0.99955 0.00210 0.00076 0.61854 0.01046 1635 | HG02025 1042233 1.00000 1531184 0.99955 0.00084 0.00027 0.59500 0.01266 1636 | HG01632 915551 1.00000 1600474 0.99956 0.00090 0.00028 0.63611 0.01293 1637 | HG00282 919599 1.00000 1637167 0.99955 0.00086 0.00027 0.64033 0.01247 1638 | HG03998 934934 1.00000 1699284 0.99957 0.00215 0.00076 0.64508 0.01147 1639 | HG02151 1039481 1.00000 1544197 0.99949 0.00094 0.00030 0.59767 0.01228 1640 | HG00356 939451 1.00000 1626944 0.99954 0.00105 0.00035 0.63394 0.01188 1641 | NA18977 1031947 1.00000 1555050 0.99950 0.00088 0.00028 0.60110 0.01214 1642 | HG02274 934809 1.00000 1737731 0.99956 0.00083 0.00026 0.65022 0.01126 1643 | NA20539 902686 1.00000 1609922 0.99955 0.00151 0.00047 0.64074 0.01303 1644 | NA19223 1000257 1.00000 1578028 0.99955 0.00085 0.00028 0.61205 0.01131 1645 | NA21091 943505 1.00000 1656629 0.99956 0.00093 0.00029 0.63713 0.01186 1646 | HG02485 891823 1.00000 1691724 0.99951 0.00193 0.00072 0.65481 0.01326 1647 | NA18757 1000155 1.00000 1508698 0.99945 0.00074 0.00023 0.60135 0.01445 1648 | HG01248 926834 1.00000 1746073 0.99953 0.00094 0.00029 0.65325 0.00926 1649 | NA11933 909817 1.00000 1637945 0.99956 0.00086 0.00026 0.64290 0.01252 1650 | HG01284 891770 1.00000 1700610 0.99949 0.00103 0.00033 0.65600 0.01269 1651 | HG03159 989986 1.00000 1581849 0.99950 0.00185 0.00067 0.61507 0.01163 1652 | NA18537 1033217 1.00000 1551819 0.99943 0.00097 0.00031 0.60031 0.01233 1653 | NA20756 919957 1.00000 1615591 0.99952 0.00092 0.00029 0.63718 0.01262 1654 | HG01889 939803 1.00000 1560269 0.99945 0.00074 0.00024 0.62409 0.01402 1655 | HG00288 911888 1.00000 1607931 0.99955 0.00129 0.00040 0.63811 0.01200 1656 | NA20910 949069 1.00000 1665986 0.99957 0.00092 0.00029 0.63707 0.01152 1657 | HG03193 972877 1.00000 1603682 0.99947 0.00155 0.00056 0.62241 0.01292 1658 | NA19430 973427 1.00000 1611689 0.99952 0.00085 0.00028 0.62345 0.01270 1659 | NA20867 950562 1.00000 1654722 0.99957 0.00090 0.00028 0.63514 0.01197 1660 | HG02941 975316 1.00000 1575529 0.99947 0.00094 0.00031 0.61765 0.01257 1661 | HG03007 927029 1.00000 1632745 0.99954 0.00290 0.00099 0.63785 0.01217 1662 | HG02141 1032074 1.00000 1554067 0.99946 0.00118 0.00041 0.60092 0.01350 1663 | NA18946 1012962 1.00000 1498552 0.99947 0.00118 0.00037 0.59667 0.01369 1664 | HG02481 952456 1.00000 1630236 0.99953 0.00111 0.00039 0.63122 0.01171 1665 | HG00442 1051974 1.00000 1546607 0.99952 0.00089 0.00028 0.59517 0.01159 1666 | NA18593 1044698 1.00000 1541297 0.99950 0.00100 0.00033 0.59602 0.01259 1667 | HG02271 1115296 1.00000 1379944 0.99947 0.00125 0.00043 0.55303 0.01224 1668 | NA18630 1075265 1.00000 1568204 0.99955 0.00104 0.00034 0.59324 0.00983 1669 | NA20786 928305 1.00000 1638389 0.99955 0.00101 0.00032 0.63833 0.01162 1670 | HG01846 1021421 1.00000 1531075 0.99948 0.00097 0.00031 0.59983 0.01297 1671 | NA18909 970683 1.00000 1581332 0.99952 0.00069 0.00023 0.61964 0.01275 1672 | NA18981 1014538 1.00000 1480796 0.99947 0.00089 0.00028 0.59343 0.01415 1673 | HG01577 913195 1.00000 1685095 0.99956 0.00098 0.00030 0.64854 0.01180 1674 | HG00139 934172 1.00000 1631322 0.99958 0.00090 0.00028 0.63587 0.01101 1675 | NA18747 1042689 1.00000 1536718 0.99954 0.00081 0.00026 0.59576 0.01228 1676 | HG00956 1044947 1.00000 1545265 0.99950 0.00098 0.00031 0.59658 0.01233 1677 | HG03950 928261 1.00000 1667418 0.99955 0.00087 0.00027 0.64238 0.01195 1678 | NA20875 951635 1.00000 1679085 0.99955 0.00105 0.00032 0.63826 0.01032 1679 | HG03172 984149 1.00000 1558870 0.99947 0.00163 0.00060 0.61300 0.01298 1680 | HG03863 941517 1.00000 1633755 0.99952 0.00194 0.00070 0.63440 0.01265 1681 | NA18620 1058405 1.00000 1553750 0.99954 0.00090 0.00029 0.59482 0.01160 1682 | NA19149 985773 1.00000 1545753 0.99954 0.00078 0.00025 0.61060 0.01288 1683 | HG02810 1008191 1.00000 1505467 0.99944 0.00105 0.00036 0.59891 0.01389 1684 | NA20774 920197 1.00000 1638943 0.99953 0.00089 0.00028 0.64043 0.01179 1685 | HG02790 940395 1.00000 1626410 0.99951 0.00105 0.00033 0.63363 0.01230 1686 | HG03511 993617 1.00000 1580587 0.99953 0.00084 0.00029 0.61401 0.01203 1687 | HG03539 954024 1.00000 1590740 0.99958 0.00080 0.00026 0.62510 0.01227 1688 | HG03195 985745 1.00000 1556624 0.99953 0.00126 0.00045 0.61227 0.01259 1689 | HG02769 1002721 1.00000 1585769 0.99955 0.00158 0.00057 0.61262 0.01076 1690 | HG01516 932563 1.00000 1608192 0.99951 0.00093 0.00029 0.63296 0.01198 1691 | HG00690 1023727 1.00000 1506908 0.99950 0.00131 0.00041 0.59547 0.01279 1692 | HG03967 973091 1.00000 1605669 0.99942 0.00331 0.00123 0.62265 0.01178 1693 | HG01947 957482 1.00000 1576611 0.99950 0.00094 0.00031 0.62216 0.01347 1694 | HG00349 955257 1.00000 1630999 0.99954 0.00103 0.00031 0.63064 0.01100 1695 | HG04188 949928 1.00000 1686911 0.99950 0.00423 0.00155 0.63975 0.01153 1696 | HG03603 953872 1.00000 1730570 0.99956 0.00144 0.00047 0.64467 0.01008 1697 | NA18873 974024 1.00000 1582752 0.99955 0.00077 0.00025 0.61904 0.01242 1698 | NA19380 959318 1.00000 1601419 0.99955 0.00123 0.00040 0.62537 0.01185 1699 | HG01982 1044381 1.00000 1518715 0.99951 0.00077 0.00025 0.59253 0.01164 1700 | HG02562 986262 1.00000 1625833 0.99951 0.00153 0.00055 0.62242 0.01045 1701 | HG04006 956055 1.00000 1713460 0.99953 0.00214 0.00075 0.64186 0.01034 1702 | HG02682 921172 1.00000 1631198 0.99952 0.00096 0.00030 0.63909 0.01268 1703 | HG02084 1021068 1.00000 1511290 0.99945 0.00080 0.00026 0.59679 0.01380 1704 | HG01848 1048970 1.00000 1555628 0.99953 0.00103 0.00033 0.59726 0.01101 1705 | HG02896 998652 1.00000 1547828 0.99946 0.00195 0.00074 0.60783 0.01186 1706 | HG01122 923015 1.00000 1731903 0.99951 0.00102 0.00032 0.65234 0.01097 1707 | HG02360 1015482 1.00000 1505645 0.99932 0.00357 0.00141 0.59721 0.01376 1708 | HG02087 1039633 1.00000 1558859 0.99944 0.00079 0.00025 0.59991 0.01263 1709 | HG00122 921087 1.00000 1667608 0.99953 0.00106 0.00033 0.64419 0.01119 1710 | HG03583 976632 1.00000 1563688 0.99950 0.00104 0.00036 0.61555 0.01268 1711 | HG01311 903812 1.00000 1707509 0.99957 0.00090 0.00028 0.65389 0.01188 1712 | HG00177 924582 1.00000 1584656 0.99953 0.00096 0.00029 0.63153 0.01266 1713 | HG03890 942669 1.00000 1713248 0.99955 0.00170 0.00058 0.64507 0.01155 1714 | NA19473 958914 1.00000 1601266 0.99961 0.00073 0.00024 0.62545 0.01252 1715 | HG01606 898648 1.00000 1583381 0.99953 0.00086 0.00026 0.63794 0.01309 1716 | HG02252 996651 1.00000 1595404 0.99953 0.00085 0.00027 0.61550 0.01083 1717 | HG02613 971519 1.00000 1591662 0.99949 0.00196 0.00076 0.62097 0.01206 1718 | HG01783 916590 1.00000 1613174 0.99955 0.00103 0.00032 0.63768 0.01192 1719 | NA19728 1090951 1.00000 1404928 0.99942 0.00165 0.00060 0.56290 0.01260 1720 | HG03499 1013060 1.00000 1596469 0.99953 0.00131 0.00046 0.61178 0.00972 1721 | HG01811 1040848 1.00000 1514596 0.99948 0.00104 0.00034 0.59269 0.01302 1722 | NA18552 1027244 1.00000 1541398 0.99949 0.00091 0.00029 0.60008 0.01278 1723 | HG01954 1057594 1.00000 1419418 0.99945 0.00078 0.00025 0.57304 0.01432 1724 | NA18951 1053953 1.00000 1565821 0.99947 0.00093 0.00029 0.59769 0.01190 1725 | NA19334 974643 1.00000 1610002 0.99953 0.00078 0.00026 0.62291 0.01226 1726 | HG04209 985077 1.00000 1548469 0.99948 0.00169 0.00057 0.61119 0.01256 1727 | HG02104 1069531 1.00000 1469604 0.99946 0.00080 0.00026 0.57878 0.01202 1728 | NA19786 945681 1.00000 1645302 0.99955 0.00080 0.00025 0.63501 0.01236 1729 | NA19314 983451 1.00000 1639298 0.99949 0.00094 0.00031 0.62503 0.01103 1730 | HG03129 987049 1.00000 1527574 0.99951 0.00103 0.00035 0.60748 0.01249 1731 | HG01551 874508 1.00000 1774943 0.99957 0.00099 0.00031 0.66993 0.01247 1732 | NA11992 915246 1.00000 1621708 0.99951 0.00088 0.00027 0.63923 0.01313 1733 | NA18592 1052094 1.00000 1538774 0.99952 0.00096 0.00030 0.59392 0.01194 1734 | HG01596 1034382 1.00000 1557926 0.99954 0.00084 0.00027 0.60098 0.01144 1735 | HG03015 958667 1.00000 1640546 0.99955 0.00121 0.00039 0.63117 0.01178 1736 | NA18617 1038980 1.00000 1530080 0.99954 0.00120 0.00037 0.59558 0.01272 1737 | NA20894 938339 1.00000 1635407 0.99951 0.00091 0.00028 0.63542 0.01346 1738 | NA19726 964831 1.00000 1625135 0.99954 0.00104 0.00033 0.62747 0.01163 1739 | HG02035 1039268 1.00000 1569330 0.99948 0.00083 0.00026 0.60160 0.01218 1740 | HG00130 899914 1.00000 1604462 0.99955 0.00106 0.00033 0.64066 0.01294 1741 | HG01362 889209 1.00000 1718642 0.99962 0.00097 0.00029 0.65903 0.01190 1742 | HG01757 922874 1.00000 1629984 0.99955 0.00099 0.00030 0.63849 0.01183 1743 | NA20299 815739 1.00000 1835180 0.99954 0.00088 0.00026 0.69228 0.01398 1744 | HG00654 1028272 1.00000 1528656 0.99958 0.00077 0.00024 0.59785 0.01238 1745 | HG03464 963440 1.00000 1567279 0.99941 0.00303 0.00118 0.61930 0.01378 1746 | NA19012 1133206 1.00000 1409644 0.99946 0.00095 0.00031 0.55436 0.01181 1747 | NA20790 930180 1.00000 1636496 0.99953 0.00092 0.00029 0.63759 0.01159 1748 | HG02494 931539 1.00000 1677645 0.99950 0.00234 0.00082 0.64298 0.01144 1749 | HG02811 977407 1.00000 1576035 0.99953 0.00183 0.00067 0.61722 0.01235 1750 | HG01360 900320 1.00000 1697243 0.99952 0.00085 0.00026 0.65340 0.01284 1751 | HG01912 931980 1.00000 1587671 0.99947 0.00118 0.00043 0.63012 0.01388 1752 | NA19900 918346 1.00000 1689171 0.99955 0.00082 0.00026 0.64781 0.01204 1753 | HG00634 1047786 1.00000 1548538 0.99945 0.00080 0.00025 0.59643 0.01274 1754 | HG00284 919703 1.00000 1641712 0.99958 0.00088 0.00027 0.64094 0.01134 1755 | HG01858 1037962 1.00000 1543092 0.99951 0.00180 0.00057 0.59785 0.01244 1756 | HG00185 923210 1.00000 1652007 0.99955 0.00088 0.00028 0.64150 0.01173 1757 | HG04202 929598 1.00000 1634008 0.99942 0.00446 0.00165 0.63739 0.01257 1758 | HG03733 987153 1.00000 1613006 0.99952 0.00101 0.00033 0.62035 0.01052 1759 | HG01625 901488 1.00000 1635025 0.99959 0.00089 0.00027 0.64460 0.01234 1760 | NA20586 900125 1.00000 1632206 0.99959 0.00090 0.00028 0.64455 0.01193 1761 | NA12043 940975 1.00000 1649631 0.99957 0.00108 0.00033 0.63677 0.01108 1762 | NA19107 979513 1.00000 1560085 0.99951 0.00086 0.00028 0.61430 0.01273 1763 | HG00383 947169 1.00000 1618381 0.99955 0.00087 0.00027 0.63081 0.01182 1764 | NA19030 974553 1.00000 1585224 0.99957 0.00079 0.00026 0.61928 0.01168 1765 | HG00116 953247 1.00000 1663695 0.99959 0.00122 0.00039 0.63574 0.00938 1766 | HG03048 970755 1.00000 1569098 0.99944 0.00307 0.00114 0.61779 0.01229 1767 | HG02888 937911 1.00000 1535021 0.99947 0.00091 0.00031 0.62073 0.01369 1768 | HG00181 916575 1.00000 1666447 0.99954 0.00087 0.00027 0.64515 0.01191 1769 | HG03593 946215 1.00000 1667288 0.99953 0.00118 0.00039 0.63795 0.01289 1770 | NA19058 1024873 1.00000 1529220 0.99952 0.00087 0.00027 0.59873 0.01283 1771 | HG00708 1042762 1.00000 1532957 0.99947 0.00085 0.00027 0.59516 0.01231 1772 | HG01312 896126 1.00000 1709088 0.99960 0.00099 0.00030 0.65603 0.01187 1773 | HG03557 991578 1.00000 1584425 0.99954 0.00086 0.00029 0.61507 0.01116 1774 | NA18621 1036994 1.00000 1516785 0.99952 0.00102 0.00032 0.59394 0.01291 1775 | NA20531 908418 1.00000 1609288 0.99956 0.00135 0.00041 0.63919 0.01224 1776 | HG01522 937822 1.00000 1588733 0.99946 0.00094 0.00030 0.62881 0.01250 1777 | NA20798 916204 1.00000 1604684 0.99950 0.00139 0.00043 0.63656 0.01302 1778 | HG00099 948386 1.00000 1646089 0.99955 0.00093 0.00029 0.63446 0.01041 1779 | HG03668 934257 1.00000 1692881 0.99947 0.00227 0.00082 0.64438 0.01193 1780 | HG03615 986279 1.00000 1642367 0.99954 0.00100 0.00031 0.62480 0.01138 1781 | HG01403 878552 1.00000 1704385 0.99953 0.00133 0.00040 0.65986 0.01232 1782 | HG01384 908312 1.00000 1673022 0.99950 0.00130 0.00039 0.64812 0.01203 1783 | HG01170 870184 1.00000 1665075 0.99959 0.00085 0.00026 0.65677 0.01265 1784 | HG00851 1057105 1.00000 1532843 0.99808 0.01378 0.00550 0.59184 0.01336 1785 | HG01402 895090 1.00000 1727110 0.99961 0.00090 0.00028 0.65865 0.01107 1786 | HG00565 1013134 1.00000 1519665 0.99949 0.00111 0.00035 0.59999 0.01336 1787 | NA18549 1039102 1.00000 1553690 0.99951 0.00096 0.00031 0.59923 0.01284 1788 | NA18579 1027309 1.00000 1553503 0.99947 0.00108 0.00034 0.60194 0.01294 1789 | HG01061 929880 1.00000 1659854 0.99946 0.00337 0.00125 0.64094 0.01213 1790 | NA19079 1065516 1.00000 1578275 0.99949 0.00111 0.00035 0.59697 0.00999 1791 | NA20858 920916 1.00000 1700491 0.99954 0.00104 0.00034 0.64869 0.01171 1792 | NA19909 936629 1.00000 1628184 0.99954 0.00085 0.00027 0.63482 0.01280 1793 | HG03714 938056 1.00000 1703495 0.99954 0.00090 0.00028 0.64488 0.01207 1794 | NA18948 1030504 1.00000 1525484 0.99946 0.00086 0.00027 0.59683 0.01334 1795 | NA18643 1051151 1.00000 1556924 0.99950 0.00098 0.00031 0.59696 0.01133 1796 | HG02814 991095 1.00000 1624177 0.99950 0.00174 0.00065 0.62104 0.01148 1797 | HG00598 1050772 1.00000 1546621 0.99945 0.00101 0.00032 0.59545 0.01202 1798 | HG01863 1041086 1.00000 1543267 0.99945 0.00091 0.00029 0.59716 0.01234 1799 | HG02716 984685 1.00000 1585924 0.99954 0.00132 0.00048 0.61694 0.01185 1800 | HG01280 923580 1.00000 1698041 0.99946 0.00086 0.00027 0.64771 0.01282 1801 | HG03781 936022 1.00000 1666239 0.99959 0.00112 0.00036 0.64030 0.01235 1802 | HG03109 987612 1.00000 1598478 0.99954 0.00126 0.00046 0.61811 0.01104 1803 | HG01443 946936 1.00000 1626437 0.99951 0.00087 0.00027 0.63203 0.01268 1804 | HG03078 963470 1.00000 1543465 0.99952 0.00094 0.00032 0.61568 0.01353 1805 | HG02156 1057049 1.00000 1519562 0.99951 0.00087 0.00028 0.58975 0.01192 1806 | HG04038 944107 1.00000 1639208 0.99957 0.00153 0.00052 0.63454 0.01227 1807 | NA19984 932515 1.00000 1677939 0.99960 0.00085 0.00027 0.64278 0.01177 1808 | HG02976 985878 1.00000 1589178 0.99955 0.00095 0.00032 0.61714 0.01181 1809 | NA19200 979257 1.00000 1551088 0.99954 0.00075 0.00025 0.61299 0.01319 1810 | HG00689 1077257 1.00000 1568492 0.99958 0.00152 0.00049 0.59283 0.00857 1811 | HG00464 1052554 1.00000 1538138 0.99949 0.00101 0.00032 0.59372 0.01222 1812 | HG00143 913572 1.00000 1636877 0.99948 0.00129 0.00039 0.64180 0.01236 1813 | HG02594 959854 1.00000 1562148 0.99949 0.00130 0.00048 0.61941 0.01342 1814 | HG02233 911131 1.00000 1658294 0.99953 0.00087 0.00027 0.64539 0.01228 1815 | HG03514 965796 1.00000 1576625 0.99952 0.00111 0.00038 0.62013 0.01297 1816 | HG03738 995432 1.00000 1585391 0.99954 0.00117 0.00040 0.61430 0.01202 1817 | HG03792 962589 1.00000 1616216 0.99947 0.00124 0.00042 0.62673 0.01224 1818 | HG02887 975890 1.00000 1553984 0.99908 0.00101 0.00035 0.61425 0.01968 1819 | NA20853 951763 1.00000 1671942 0.99951 0.00109 0.00034 0.63724 0.01197 1820 | NA19664 918738 1.00000 1624534 0.99952 0.00077 0.00024 0.63876 0.01370 1821 | HG01067 894534 1.00000 1686727 0.99954 0.00112 0.00034 0.65345 0.01183 1822 | HG00536 1030478 1.00000 1514336 0.99945 0.00084 0.00027 0.59507 0.01431 1823 | HG01805 1008804 1.00000 1505409 0.99943 0.00100 0.00031 0.59876 0.01365 1824 | HG02470 949297 1.00000 1618137 0.99949 0.00089 0.00031 0.63025 0.01255 1825 | HG04171 937084 1.00000 1724579 0.99956 0.00155 0.00050 0.64793 0.01112 1826 | NA20348 939381 1.00000 1694067 0.99956 0.00087 0.00028 0.64329 0.01168 1827 | NA20874 929611 1.00000 1697320 0.99955 0.00093 0.00028 0.64612 0.01209 1828 | HG02479 947777 1.00000 1642107 0.99952 0.00100 0.00035 0.63405 0.01212 1829 | HG02023 1020226 1.00000 1560120 0.99950 0.00089 0.00029 0.60462 0.01265 1830 | NA20897 946799 1.00000 1654292 0.99950 0.00102 0.00031 0.63600 0.01237 1831 | NA18853 991087 1.00000 1597539 0.99953 0.00101 0.00036 0.61714 0.01158 1832 | HG02595 969943 1.00000 1553305 0.99949 0.00111 0.00040 0.61560 0.01260 1833 | NA18868 971177 1.00000 1586895 0.99950 0.00086 0.00028 0.62035 0.01212 1834 | HG03199 978148 1.00000 1561226 0.99946 0.00171 0.00063 0.61481 0.01322 1835 | NA12249 941862 1.00000 1638737 0.99949 0.00108 0.00033 0.63502 0.01149 1836 | HG02150 1100944 1.00000 1388750 0.99946 0.00081 0.00027 0.55780 0.01205 1837 | HG00343 918558 1.00000 1636422 0.99955 0.00092 0.00029 0.64048 0.01201 1838 | HG02696 915773 1.00000 1728078 0.99946 0.00254 0.00089 0.65362 0.01239 1839 | HG01892 988213 1.00000 1578129 0.99954 0.00083 0.00027 0.61493 0.01241 1840 | HG01518 932008 1.00000 1596211 0.99955 0.00091 0.00028 0.63136 0.01219 1841 | NA12890 915101 1.00000 1617414 0.99954 0.00089 0.00027 0.63866 0.01240 1842 | HG02235 914138 1.00000 1627948 0.99952 0.00086 0.00028 0.64040 0.01243 1843 | HG02013 972235 1.00000 1609845 0.99958 0.00088 0.00029 0.62347 0.01148 1844 | HG03624 910641 1.00000 1648229 0.99951 0.00106 0.00034 0.64412 0.01215 1845 | HG00736 897337 1.00000 1661395 0.99956 0.00142 0.00043 0.64930 0.01170 1846 | HG03270 1008998 1.00000 1616627 0.99964 0.00202 0.00074 0.61571 0.00811 1847 | NA18995 1069598 1.00000 1530905 0.99947 0.00094 0.00031 0.58870 0.01209 1848 | NA20339 969102 1.00000 1637804 0.99955 0.00091 0.00029 0.62826 0.01206 1849 | HG02166 1030049 1.00000 1515468 0.99930 0.00420 0.00162 0.59535 0.01327 1850 | HG00443 1048438 1.00000 1562857 0.99949 0.00095 0.00031 0.59850 0.01153 1851 | HG01798 1065223 1.00000 1577450 0.99950 0.00122 0.00040 0.59691 0.00964 1852 | HG01702 914598 1.00000 1578959 0.99956 0.00085 0.00026 0.63322 0.01322 1853 | HG00500 1060298 1.00000 1553372 0.99952 0.00121 0.00037 0.59433 0.01085 1854 | HG00672 1015125 1.00000 1484009 0.99943 0.00094 0.00030 0.59381 0.01487 1855 | HG01513 879999 1.00000 1583171 0.99952 0.00091 0.00028 0.64274 0.01333 1856 | NA18957 1027653 1.00000 1526387 0.99949 0.00097 0.00031 0.59764 0.01289 1857 | NA18970 1069019 1.00000 1572253 0.99950 0.00097 0.00031 0.59526 0.01068 1858 | HG00121 927501 1.00000 1611971 0.99948 0.00106 0.00033 0.63477 0.01287 1859 | HG00334 933767 1.00000 1618542 0.99955 0.00103 0.00033 0.63415 0.01210 1860 | HG02970 948581 1.00000 1530483 0.99945 0.00113 0.00039 0.61736 0.01415 1861 | HG03342 986110 1.00000 1593130 0.99951 0.00183 0.00069 0.61767 0.01209 1862 | NA18942 1042807 1.00000 1556388 0.99944 0.00108 0.00037 0.59880 0.01268 1863 | HG01357 901440 1.00000 1631048 0.99945 0.00136 0.00042 0.64405 0.01620 1864 | HG01377 909346 1.00000 1729121 0.99958 0.00094 0.00029 0.65535 0.01076 1865 | HG03133 1000683 1.00000 1594031 0.99959 0.00092 0.00031 0.61434 0.01008 1866 | NA18749 1019272 1.00000 1509017 0.99947 0.00076 0.00024 0.59685 0.01418 1867 | NA19147 982674 1.00000 1567065 0.99950 0.00084 0.00028 0.61460 0.01347 1868 | HG01918 1015602 1.00000 1519862 0.99950 0.00088 0.00029 0.59944 0.01239 1869 | HG02356 1030736 1.00000 1520711 0.99951 0.00119 0.00039 0.59602 0.01280 1870 | HG01303 884068 1.00000 1669314 0.99952 0.00131 0.00039 0.65377 0.01449 1871 | HG00631 1021316 1.00000 1517689 0.99950 0.00083 0.00027 0.59775 0.01336 1872 | HG04106 973638 1.00000 1654509 0.99956 0.00250 0.00090 0.62953 0.00967 1873 | HG02375 1068829 1.00000 1545986 0.99946 0.00122 0.00040 0.59124 0.01168 1874 | HG00127 939793 1.00000 1627271 0.99957 0.00105 0.00033 0.63390 0.01134 1875 | HG00373 930137 1.00000 1606445 0.99952 0.00083 0.00026 0.63331 0.01287 1876 | NA18934 969634 1.00000 1540912 0.99946 0.00080 0.00028 0.61378 0.01445 1877 | HG02772 994030 1.00000 1586924 0.99949 0.00109 0.00037 0.61486 0.01263 1878 | HG04140 960973 1.00000 1685558 0.99956 0.00153 0.00049 0.63689 0.01043 1879 | HG04118 938588 1.00000 1681739 0.99950 0.00201 0.00071 0.64181 0.01155 1880 | NA19375 983016 1.00000 1602406 0.99954 0.00080 0.00026 0.61979 0.01210 1881 | NA20543 919761 1.00000 1659547 0.99955 0.00175 0.00062 0.64341 0.01145 1882 | HG02807 989332 1.00000 1636309 0.99957 0.00185 0.00068 0.62320 0.00953 1883 | HG03947 950274 1.00000 1694697 0.99955 0.00179 0.00062 0.64072 0.01094 1884 | NA19210 991575 1.00000 1588116 0.99952 0.00086 0.00029 0.61562 0.01212 1885 | HG01631 900879 1.00000 1597843 0.99950 0.00100 0.00032 0.63946 0.01293 1886 | NA20291 940192 1.00000 1579312 0.99957 0.00088 0.00028 0.62683 0.01322 1887 | NA19731 1082863 1.00000 1403007 0.99943 0.00077 0.00025 0.56439 0.01359 1888 | NA19434 972634 1.00000 1608578 0.99953 0.00100 0.00032 0.62319 0.01194 1889 | NA12275 881028 1.00000 1574882 0.99958 0.00094 0.00029 0.64126 0.01378 1890 | NA18612 1058257 1.00000 1586305 0.99955 0.00123 0.00040 0.59984 0.00926 1891 | NA19729 1044617 1.00000 1461661 0.99949 0.00078 0.00025 0.58320 0.01250 1892 | NA19099 999670 1.00000 1603125 0.99950 0.00084 0.00028 0.61592 0.01120 1893 | HG00345 922329 1.00000 1633863 0.99953 0.00098 0.00030 0.63918 0.01176 1894 | HG00234 942582 1.00000 1659264 0.99953 0.00114 0.00036 0.63773 0.01088 1895 | NA20351 882552 1.00000 1778211 0.99958 0.00086 0.00027 0.66831 0.01189 1896 | HG01085 877465 1.00000 1712914 0.99958 0.00103 0.00031 0.66126 0.01172 1897 | HG01695 908975 1.00000 1618100 0.99952 0.00096 0.00030 0.64031 0.01260 1898 | NA12761 920674 1.00000 1636670 0.99953 0.00103 0.00033 0.63999 0.01145 1899 | HG02784 943869 1.00000 1652760 0.99949 0.00103 0.00033 0.63650 0.01246 1900 | HG02836 973975 1.00000 1591905 0.99957 0.00113 0.00038 0.62041 0.01189 1901 | HG03055 993273 1.00000 1580433 0.99950 0.00119 0.00042 0.61407 0.01216 1902 | HG03476 966334 1.00000 1552878 0.99951 0.00086 0.00029 0.61641 0.01339 1903 | HG04070 1092320 1.00000 1369271 0.99938 0.00193 0.00070 0.55625 0.01288 1904 | HG02385 1008005 1.00000 1482959 0.99947 0.00089 0.00028 0.59534 0.01339 1905 | HG01850 1046817 1.00000 1577631 0.99955 0.00084 0.00027 0.60113 0.01220 1906 | HG02230 931130 1.00000 1633764 0.99960 0.00087 0.00028 0.63697 0.01162 1907 | HG03086 975632 1.00000 1562651 0.99950 0.00138 0.00047 0.61563 0.01593 1908 | HG02611 989408 1.00000 1529183 0.99949 0.00105 0.00037 0.60716 0.01321 1909 | HG01372 939612 1.00000 1681079 0.99949 0.00088 0.00027 0.64146 0.01150 1910 | NA19010 1056416 1.00000 1534323 0.99949 0.00111 0.00035 0.59223 0.01171 1911 | HG01668 899785 1.00000 1632545 0.99956 0.00087 0.00026 0.64468 0.01206 1912 | HG00663 1035455 1.00000 1531213 0.99942 0.00087 0.00027 0.59658 0.01304 1913 | HG03538 974892 1.00000 1582836 0.99946 0.00162 0.00060 0.61884 0.01334 1914 | HG03585 946230 1.00000 1678833 0.99951 0.00129 0.00043 0.63954 0.01260 1915 | NA21143 962437 1.00000 1696319 0.99956 0.00106 0.00033 0.63801 0.01063 1916 | HG03786 988716 1.00000 1607672 0.99952 0.00139 0.00048 0.61920 0.01155 1917 | HG02224 914689 1.00000 1644210 0.99956 0.00101 0.00033 0.64255 0.01203 1918 | HG03039 968254 1.00000 1543316 0.99948 0.00109 0.00038 0.61448 0.01389 1919 | HG00324 949471 1.00000 1578553 0.99950 0.00086 0.00027 0.62442 0.01215 1920 | NA19654 944537 1.00000 1642952 0.99955 0.00088 0.00028 0.63496 0.01245 1921 | HG00276 905438 1.00000 1565186 0.99946 0.00103 0.00032 0.63352 0.01403 1922 | NA21106 974863 1.00000 1692852 0.99960 0.00121 0.00037 0.63457 0.00824 1923 | HG03802 942899 1.00000 1692880 0.99951 0.00098 0.00031 0.64227 0.01180 1924 | NA18548 1040796 1.00000 1566416 0.99932 0.00247 0.00092 0.60080 0.02018 1925 | NA21108 937939 1.00000 1620035 0.99953 0.00110 0.00034 0.63333 0.01313 1926 | HG00171 937521 1.00000 1642746 0.99955 0.00132 0.00041 0.63666 0.01130 1927 | HG01630 891845 1.00000 1630042 0.99950 0.00088 0.00027 0.64636 0.01261 1928 | HG03857 921612 1.00000 1659197 0.99953 0.00209 0.00072 0.64290 0.01282 1929 | NA18963 1054371 1.00000 1532457 0.99948 0.00090 0.00029 0.59241 0.01339 1930 | HG03436 993565 1.00000 1578340 0.99950 0.00184 0.00070 0.61369 0.01236 1931 | HG03054 1002784 1.00000 1594102 0.99947 0.00352 0.00136 0.61385 0.01139 1932 | HG00246 919396 1.00000 1652324 0.99954 0.00112 0.00034 0.64250 0.01174 1933 | NA10851 937811 1.00000 1609459 0.99946 0.00210 0.00075 0.63184 0.01234 1934 | NA18519 952750 1.00000 1511480 0.99953 0.00086 0.00028 0.61337 0.01345 1935 | HG00671 1040811 1.00000 1563172 0.99953 0.00082 0.00026 0.60030 0.01197 1936 | HG01938 1129068 1.00000 1386974 0.99945 0.00083 0.00028 0.55125 0.01189 1937 | NA19131 1003897 1.00000 1609798 0.99953 0.00087 0.00029 0.61591 0.01083 1938 | NA20518 907851 1.00000 1640328 0.99951 0.00131 0.00040 0.64373 0.01243 1939 | HG02855 999194 1.00000 1614885 0.99954 0.00096 0.00032 0.61776 0.01158 1940 | HG00530 1058230 1.00000 1538106 0.99956 0.00090 0.00028 0.59241 0.01152 1941 | HG01842 1026128 1.00000 1562254 0.99950 0.00096 0.00031 0.60356 0.01234 1942 | HG02860 972836 1.00000 1587977 0.99946 0.00088 0.00030 0.62011 0.01208 1943 | HG03784 982553 1.00000 1613330 0.99954 0.00098 0.00031 0.62150 0.01200 1944 | HG02019 1006106 1.00000 1519829 0.99952 0.00089 0.00029 0.60169 0.01346 1945 | HG04214 951177 1.00000 1702906 0.99947 0.00350 0.00127 0.64162 0.01108 1946 | HG00581 1021793 1.00000 1509551 0.99941 0.00088 0.00028 0.59634 0.01429 1947 | HG01519 914495 1.00000 1616936 0.99945 0.00217 0.00079 0.63874 0.01275 1948 | HG03894 973212 1.00000 1635046 0.99939 0.00303 0.00112 0.62687 0.01246 1949 | HG04017 983006 1.00000 1664780 0.99956 0.00201 0.00072 0.62874 0.01029 1950 | HG03073 998232 1.00000 1597585 0.99949 0.00237 0.00087 0.61545 0.01092 1951 | HG03990 964636 1.00000 1679639 0.99948 0.00350 0.00129 0.63520 0.01053 1952 | HG02026 1003963 1.00000 1487998 0.99941 0.00079 0.00025 0.59712 0.01496 1953 | HG03575 990049 1.00000 1579600 0.99950 0.00128 0.00046 0.61471 0.01292 1954 | NA18915 1007339 1.00000 1595487 0.99954 0.00099 0.00033 0.61298 0.00972 1955 | HG01855 1052702 1.00000 1560430 0.99949 0.00090 0.00029 0.59715 0.01186 1956 | HG03809 948576 1.00000 1691403 0.99951 0.00146 0.00050 0.64069 0.01193 1957 | HG01857 1044013 1.00000 1544585 0.99946 0.00087 0.00028 0.59669 0.01239 1958 | HG01525 905866 1.00000 1671800 0.99954 0.00095 0.00030 0.64857 0.01148 1959 | NA18595 1051300 1.00000 1508747 0.99949 0.00079 0.00026 0.58934 0.01291 1960 | NA18597 1019988 1.00000 1528509 0.99952 0.00098 0.00032 0.59977 0.01300 1961 | HG03625 1035360 1.00000 1532304 0.99944 0.00278 0.00105 0.59677 0.01082 1962 | HG01256 922486 1.00000 1707044 0.99952 0.00083 0.00026 0.64918 0.01068 1963 | HG01921 1007560 1.00000 1508449 0.99948 0.00084 0.00027 0.59954 0.01322 1964 | HG03689 995976 1.00000 1633318 0.99954 0.00141 0.00047 0.62120 0.01053 1965 | HG00537 1018279 1.00000 1506195 0.99946 0.00128 0.00039 0.59664 0.01352 1966 | HG01859 1031003 1.00000 1518740 0.99950 0.00093 0.00030 0.59564 0.01292 1967 | NA18980 1043784 1.00000 1540356 0.99947 0.00113 0.00035 0.59608 0.01257 1968 | NA18640 1045384 1.00000 1542344 0.99953 0.00092 0.00029 0.59602 0.01184 1969 | HG02401 1026865 1.00000 1522293 0.99950 0.00113 0.00038 0.59717 0.01328 1970 | HG02031 1029597 1.00000 1541156 0.99949 0.00133 0.00047 0.59950 0.01302 1971 | HG01350 933628 1.00000 1648773 0.99954 0.00082 0.00025 0.63847 0.01217 1972 | NA19020 967324 1.00000 1615469 0.99957 0.00079 0.00026 0.62547 0.01181 1973 | HG03298 1002373 1.00000 1574648 0.99947 0.00200 0.00075 0.61103 0.01208 1974 | HG00145 907509 1.00000 1601427 0.99948 0.00083 0.00025 0.63829 0.01301 1975 | HG00475 1040998 1.00000 1542105 0.99950 0.00087 0.00027 0.59700 0.01300 1976 | HG03267 1001929 1.00000 1593575 0.99958 0.00138 0.00049 0.61398 0.01070 1977 | HG03457 1000856 1.00000 1603747 0.99956 0.00143 0.00049 0.61574 0.01029 1978 | HG03691 951306 1.00000 1692925 0.99958 0.00102 0.00032 0.64023 0.01148 1979 | HG03088 981029 1.00000 1578457 0.99951 0.00144 0.00053 0.61671 0.01242 1980 | HG02952 954965 1.00000 1545649 0.99946 0.00141 0.00050 0.61811 0.01387 1981 | HG00369 949093 1.00000 1674389 0.99955 0.00110 0.00035 0.63823 0.00925 1982 | NA12154 919007 1.00000 1649929 0.99953 0.00099 0.00030 0.64226 0.01239 1983 | HG02008 1016928 1.00000 1464939 0.99943 0.00083 0.00027 0.59026 0.01352 1984 | NA18956 1030169 1.00000 1517566 0.99949 0.00088 0.00028 0.59565 0.01339 1985 | NA18639 1025438 1.00000 1512840 0.99948 0.00103 0.00032 0.59601 0.01258 1986 | NA20862 913838 1.00000 1656470 0.99961 0.00090 0.00028 0.64446 0.01247 1987 | HG03169 993950 1.00000 1552448 0.99952 0.00113 0.00040 0.60966 0.01227 1988 | HG01595 1041901 1.00000 1538423 0.99949 0.00102 0.00032 0.59621 0.01288 1989 | HG02634 1001138 1.00000 1600556 0.99949 0.00221 0.00085 0.61520 0.01193 1990 | HG03455 978481 1.00000 1576947 0.99944 0.00234 0.00089 0.61710 0.01307 1991 | NA19138 978484 1.00000 1566591 0.99953 0.00118 0.00040 0.61554 0.01237 1992 | HG01603 915373 1.00000 1628611 0.99955 0.00090 0.00028 0.64018 0.01191 1993 | HG02573 977417 1.00000 1594863 0.99953 0.00118 0.00041 0.62002 0.01222 1994 | HG00133 957108 1.00000 1673738 0.99961 0.00107 0.00035 0.63620 0.00901 1995 | NA19175 998236 1.00000 1606495 0.99951 0.00087 0.00029 0.61676 0.01176 1996 | HG00179 917770 1.00000 1618681 0.99955 0.00104 0.00032 0.63817 0.01223 1997 | NA18998 1046437 1.00000 1548122 0.99890 0.00701 0.00287 0.59668 0.01293 1998 | HG00844 1017745 1.00000 1540825 0.99953 0.00103 0.00032 0.60222 0.01289 1999 | NA20544 928406 1.00000 1643402 0.99952 0.00135 0.00042 0.63901 0.01234 2000 | HG03449 987794 1.00000 1581747 0.99945 0.00209 0.00080 0.61558 0.01322 2001 | HG01174 929518 1.00000 1640859 0.99952 0.00096 0.00030 0.63837 0.01244 2002 | HG02736 918401 1.00000 1676957 0.99958 0.00135 0.00045 0.64614 0.01177 2003 | HG02885 994552 1.00000 1634051 0.99939 0.00543 0.00215 0.62164 0.01081 2004 | NA18577 1043679 1.00000 1538206 0.99954 0.00093 0.00030 0.59577 0.01143 2005 | NA20287 955245 1.00000 1707615 0.99964 0.00106 0.00035 0.64127 0.00894 2006 | NA20321 913703 1.00000 1649418 0.99956 0.00092 0.00030 0.64352 0.01225 2007 | NA21142 963265 1.00000 1672271 0.99956 0.00109 0.00034 0.63451 0.01015 2008 | HG01920 1119125 1.00000 1345106 0.99943 0.00075 0.00025 0.54585 0.01331 2009 | NA12778 909551 1.00000 1554766 0.99947 0.00114 0.00038 0.63091 0.01380 2010 | HG00238 889425 1.00000 1575964 0.99951 0.00103 0.00032 0.63924 0.01342 2011 | HG01707 913365 1.00000 1626022 0.99955 0.00086 0.00027 0.64032 0.01221 2012 | NA12775 911967 1.00000 1635549 0.99910 0.00684 0.00261 0.64202 0.01259 2013 | HG01948 943616 1.00000 1724854 0.99953 0.00125 0.00042 0.64638 0.01099 2014 | HG02657 912914 1.00000 1669585 0.99949 0.00151 0.00049 0.64650 0.01312 2015 | HG01965 942379 1.00000 1636046 0.99952 0.00094 0.00029 0.63451 0.01278 2016 | HG03202 945521 1.00000 1514022 0.99947 0.00151 0.00054 0.61557 0.01386 2017 | HG00105 889474 1.00000 1577028 0.99947 0.00107 0.00033 0.63938 0.01391 2018 | HG04003 953891 1.00000 1713351 0.99952 0.00379 0.00138 0.64237 0.01001 2019 | HG01507 911144 1.00000 1613626 0.99955 0.00091 0.00029 0.63912 0.01211 2020 | HG01669 910259 1.00000 1622905 0.99959 0.00097 0.00030 0.64066 0.01200 2021 | HG02667 1001138 1.00000 1488607 0.99951 0.00123 0.00045 0.59790 0.01264 2022 | HG03136 987475 1.00000 1549374 0.99958 0.00086 0.00028 0.61075 0.01236 2023 | HG00566 1071435 1.00000 1562706 0.99951 0.00098 0.00031 0.59325 0.00961 2024 | HG03779 935294 1.00000 1683066 0.99956 0.00099 0.00032 0.64279 0.01156 2025 | HG01883 937849 1.00000 1660817 0.99950 0.00084 0.00027 0.63910 0.01306 2026 | HG02219 946480 1.00000 1646667 0.99960 0.00098 0.00031 0.63501 0.01039 2027 | HG02317 929812 1.00000 1557455 0.99949 0.00091 0.00031 0.62617 0.01325 2028 | HG03871 939964 1.00000 1666704 0.99952 0.00239 0.00084 0.63940 0.01169 2029 | HG03914 914285 1.00000 1642485 0.99950 0.00191 0.00068 0.64241 0.01292 2030 | HG04176 909803 1.00000 1628361 0.99947 0.00222 0.00077 0.64155 0.01317 2031 | NA19717 958883 1.00000 1658414 0.99957 0.00099 0.00030 0.63364 0.01226 2032 | HG02731 904319 1.00000 1683248 0.99950 0.00134 0.00045 0.65051 0.01331 2033 | HG02325 969020 1.00000 1604224 0.99954 0.00104 0.00035 0.62342 0.01154 2034 | NA19401 969866 1.00000 1603910 0.99954 0.00086 0.00028 0.62317 0.01263 2035 | HG01069 934541 1.00000 1748556 0.99961 0.00099 0.00031 0.65169 0.00839 2036 | HG01130 912029 1.00000 1701420 0.99953 0.00090 0.00028 0.65102 0.01237 2037 | HG02582 982830 1.00000 1554974 0.99952 0.00149 0.00056 0.61272 0.01266 2038 | NA19378 934379 1.00000 1561563 0.99951 0.00072 0.00024 0.62564 0.01382 2039 | HG02793 944174 1.00000 1665357 0.99956 0.00166 0.00057 0.63818 0.01186 2040 | HG02878 974376 1.00000 1602013 0.99952 0.00091 0.00031 0.62181 0.01227 2041 | HG03844 953188 1.00000 1605907 0.99943 0.00229 0.00083 0.62753 0.01268 2042 | NA12872 941850 1.00000 1672881 0.99955 0.00116 0.00036 0.63979 0.00957 2043 | HG00589 1060829 1.00000 1531553 0.99946 0.00105 0.00034 0.59079 0.01178 2044 | HG02702 959758 1.00000 1560130 0.99957 0.00093 0.00032 0.61913 0.01248 2045 | HG03521 987749 1.00000 1572804 0.99952 0.00146 0.00053 0.61424 0.01207 2046 | HG02688 940248 1.00000 1658685 0.99955 0.00113 0.00037 0.63822 0.01185 2047 | HG01808 1045758 1.00000 1543635 0.99949 0.00092 0.00029 0.59614 0.01242 2048 | HG01988 860610 1.00000 1737790 0.99954 0.00077 0.00024 0.66879 0.01220 2049 | NA19209 1001377 1.00000 1604872 0.99951 0.00077 0.00026 0.61578 0.01162 2050 | NA19438 974630 1.00000 1612267 0.99953 0.00077 0.00026 0.62324 0.01198 2051 | NA19795 911454 1.00000 1691929 0.99953 0.00078 0.00024 0.64990 0.01246 2052 | HG00534 1047361 1.00000 1562238 0.99950 0.00085 0.00027 0.59865 0.01184 2053 | NA18748 1051786 1.00000 1566593 0.99947 0.00100 0.00032 0.59831 0.01157 2054 | HG00472 1013540 1.00000 1497762 0.99951 0.00089 0.00028 0.59641 0.01364 2055 | NA20502 932089 1.00000 1620319 0.99953 0.00098 0.00031 0.63482 0.01200 2056 | HG01441 926164 1.00000 1660773 0.99955 0.00094 0.00029 0.64198 0.01161 2057 | NA19468 971944 1.00000 1603260 0.99956 0.00079 0.00026 0.62258 0.01198 2058 | NA20582 936775 1.00000 1586915 0.99959 0.00132 0.00040 0.62881 0.01143 2059 | HG01133 924245 1.00000 1677769 0.99955 0.00089 0.00028 0.64480 0.01133 2060 | NA11995 899897 1.00000 1576256 0.99953 0.00084 0.00026 0.63657 0.01292 2061 | NA12763 922925 1.00000 1647082 0.99956 0.00097 0.00030 0.64089 0.01354 2062 | HG01277 930055 1.00000 1623256 0.99952 0.00091 0.00028 0.63575 0.01248 2063 | NA21103 918750 1.00000 1639192 0.99953 0.00092 0.00029 0.64082 0.01271 2064 | HG02505 923288 1.00000 1605097 0.99954 0.00078 0.00025 0.63483 0.01333 2065 | HG04100 963419 1.00000 1719419 0.99947 0.00326 0.00121 0.64090 0.01042 2066 | HG04090 970802 1.00000 1663580 0.99951 0.00332 0.00122 0.63149 0.01064 2067 | NA18940 1036755 1.00000 1564252 0.99953 0.00104 0.00033 0.60140 0.01202 2068 | NA19723 940719 1.00000 1643309 0.99953 0.00095 0.00030 0.63595 0.01235 2069 | NA20505 912979 1.00000 1614588 0.99952 0.00134 0.00041 0.63879 0.01265 2070 | HG00327 947173 1.00000 1619481 0.99953 0.00083 0.00026 0.63097 0.01156 2071 | HG01413 907812 1.00000 1705775 0.99954 0.00092 0.00029 0.65266 0.01176 2072 | HG01917 1028205 1.00000 1474751 0.99947 0.00095 0.00031 0.58920 0.01394 2073 | NA12341 935296 1.00000 1654109 0.99959 0.00089 0.00028 0.63880 0.01146 2074 | HG00766 1035518 1.00000 1540781 0.99955 0.00084 0.00027 0.59806 0.01153 2075 | HG00154 928995 1.00000 1622577 0.99952 0.00092 0.00029 0.63591 0.01124 2076 | NA19818 915726 1.00000 1692156 0.99954 0.00105 0.00033 0.64886 0.01276 2077 | NA12777 935344 1.00000 1593081 0.99950 0.00091 0.00030 0.63007 0.01202 2078 | HG03085 977330 1.00000 1565393 0.99950 0.00099 0.00034 0.61564 0.01358 2079 | HG02660 958993 1.00000 1634925 0.99948 0.00129 0.00043 0.63029 0.01247 2080 | HG01251 908669 1.00000 1657313 0.99957 0.00089 0.00027 0.64588 0.01203 2081 | HG03096 967155 1.00000 1550222 0.99946 0.00155 0.00056 0.61581 0.01416 2082 | HG01869 1013363 1.00000 1531859 0.99952 0.00096 0.00031 0.60186 0.01283 2083 | HG01915 931584 1.00000 1606172 0.99952 0.00078 0.00025 0.63291 0.01331 2084 | HG03241 991361 1.00000 1589996 0.99947 0.00212 0.00081 0.61595 0.01287 2085 | HG00273 948739 1.00000 1635731 0.99955 0.00094 0.00029 0.63291 0.01073 2086 | HG00258 929562 1.00000 1675346 0.99951 0.00110 0.00034 0.64315 0.01061 2087 | HG04093 952583 1.00000 1644216 0.99920 0.00643 0.00251 0.63317 0.01195 2088 | NA18570 1022008 1.00000 1533807 0.99948 0.00082 0.00026 0.60012 0.01303 2089 | HG01997 1036083 1.00000 1414163 0.99945 0.00082 0.00027 0.57715 0.01357 2090 | HG01776 901661 1.00000 1590595 0.99951 0.00090 0.00027 0.63821 0.01302 2091 | HG02265 1058476 1.00000 1392437 0.99940 0.00238 0.00090 0.56813 0.01324 2092 | HG01139 914555 1.00000 1723713 0.99953 0.00095 0.00030 0.65335 0.01191 2093 | HG03976 942465 1.00000 1667050 0.99953 0.00188 0.00067 0.63884 0.01186 2094 | HG02250 1041062 1.00000 1523432 0.99952 0.00092 0.00029 0.59405 0.01280 2095 | NA20524 929695 1.00000 1646811 0.99954 0.00163 0.00056 0.63916 0.01073 2096 | HG01182 904930 1.00000 1721280 0.99950 0.00093 0.00028 0.65542 0.01198 2097 | NA20770 917295 1.00000 1654449 0.99953 0.00104 0.00033 0.64332 0.01136 2098 | HG00186 933042 1.00000 1623835 0.99959 0.00107 0.00033 0.63509 0.01130 2099 | NA18498 962886 1.00000 1546024 0.99956 0.00075 0.00025 0.61621 0.01366 2100 | HG03052 973012 1.00000 1561189 0.99949 0.00162 0.00060 0.61605 0.01332 2101 | NA19055 1066477 1.00000 1577057 0.99953 0.00111 0.00037 0.59657 0.01015 2102 | NA19764 901893 1.00000 1677445 0.99952 0.00076 0.00023 0.65034 0.01297 2103 | HG03160 946359 1.00000 1514607 0.99945 0.00097 0.00032 0.61545 0.01423 2104 | HG03945 964597 1.00000 1650032 0.99952 0.00163 0.00053 0.63108 0.01203 2105 | HG00406 1032950 1.00000 1543118 0.99950 0.00088 0.00028 0.59902 0.01225 2106 | HG03869 937562 1.00000 1696794 0.99953 0.00279 0.00101 0.64410 0.01131 2107 | NA18547 1073366 1.00000 1567927 0.99950 0.00106 0.00034 0.59362 0.01085 2108 | HG03744 946084 1.00000 1686542 0.99954 0.00095 0.00030 0.64063 0.01204 2109 | HG01447 920659 1.00000 1715638 0.99955 0.00094 0.00029 0.65078 0.01138 2110 | HG02136 1016505 1.00000 1541906 0.99954 0.00101 0.00034 0.60268 0.01247 2111 | NA21107 922826 1.00000 1647579 0.99953 0.00094 0.00029 0.64098 0.01279 2112 | NA19093 990898 1.00000 1588678 0.99955 0.00090 0.00030 0.61587 0.01139 2113 | NA19064 1044166 1.00000 1561898 0.99950 0.00085 0.00028 0.59933 0.01192 2114 | HG00351 904453 1.00000 1591382 0.99952 0.00085 0.00027 0.63762 0.01362 2115 | HG02111 945882 1.00000 1638200 0.99958 0.00080 0.00027 0.63396 0.01248 2116 | HG02666 974626 1.00000 1572821 0.99948 0.00153 0.00056 0.61741 0.01323 2117 | HG02588 977686 1.00000 1585318 0.99948 0.00157 0.00060 0.61854 0.01291 2118 | HG01501 915158 1.00000 1655461 0.99950 0.00094 0.00029 0.64399 0.01267 2119 | NA19308 987950 1.00000 1645855 0.99956 0.00096 0.00032 0.62490 0.00945 2120 | HG02139 1026070 1.00000 1566343 0.99949 0.00082 0.00025 0.60420 0.01318 2121 | HG00111 918835 1.00000 1600918 0.99950 0.00147 0.00047 0.63535 0.01198 2122 | HG00628 1049686 1.00000 1554916 0.99950 0.00093 0.00030 0.59699 0.01172 2123 | NA12813 945764 1.00000 1675064 0.99961 0.00108 0.00034 0.63914 0.00909 2124 | HG03343 1012684 1.00000 1590618 0.99955 0.00112 0.00039 0.61100 0.00920 2125 | HG03887 934111 1.00000 1645474 0.99935 0.00448 0.00168 0.63788 0.01267 2126 | HG04047 957728 1.00000 1675615 0.99953 0.00255 0.00090 0.63631 0.01095 2127 | NA12340 909910 1.00000 1625399 0.99959 0.00148 0.00048 0.64110 0.01140 2128 | NA11892 923596 1.00000 1639088 0.99950 0.00095 0.00030 0.63960 0.01171 2129 | NA20876 937583 1.00000 1681402 0.99952 0.00143 0.00049 0.64201 0.01226 2130 | HG02408 1027969 1.00000 1491966 0.99948 0.00089 0.00028 0.59207 0.01342 2131 | HG01817 1050018 1.00000 1533417 0.99952 0.00084 0.00027 0.59356 0.01269 2132 | HG00350 951622 1.00000 1666267 0.99952 0.00118 0.00037 0.63649 0.00934 2133 | HG03943 921829 1.00000 1594643 0.99951 0.00144 0.00048 0.63368 0.01356 2134 | NA19160 971872 1.00000 1563383 0.99952 0.00093 0.00031 0.61666 0.01257 2135 | HG00102 915891 1.00000 1620399 0.99959 0.00084 0.00026 0.63889 0.01204 2136 | NA18633 1068505 1.00000 1577544 0.99953 0.00099 0.00031 0.59619 0.00995 2137 | NA19328 1012511 1.00000 1612951 0.99950 0.00099 0.00033 0.61435 0.01042 2138 | NA18634 1032454 1.00000 1509107 0.99948 0.00096 0.00031 0.59377 0.01378 2139 | HG01980 966099 1.00000 1502858 0.99945 0.00136 0.00048 0.60870 0.01391 2140 | HG00675 1025629 1.00000 1520250 0.99947 0.00084 0.00027 0.59714 0.01371 2141 | HG01455 925427 1.00000 1659359 0.99951 0.00091 0.00028 0.64197 0.01240 2142 | HG03460 994156 1.00000 1585879 0.99947 0.00164 0.00061 0.61467 0.01172 2143 | NA19102 972842 1.00000 1551499 0.99951 0.00074 0.00025 0.61462 0.01311 2144 | NA19916 964087 1.00000 1694884 0.99956 0.00090 0.00029 0.63742 0.01072 2145 | HG01396 900744 1.00000 1742163 0.99952 0.00094 0.00028 0.65918 0.01175 2146 | HG03800 933066 1.00000 1702863 0.99960 0.00087 0.00027 0.64602 0.01181 2147 | HG04238 931305 1.00000 1664235 0.99949 0.00238 0.00084 0.64119 0.01208 2148 | HG03081 989095 1.00000 1592539 0.99947 0.00194 0.00073 0.61687 0.01137 2149 | HG03520 978068 1.00000 1569083 0.99953 0.00104 0.00038 0.61601 0.01231 2150 | HG03672 995918 1.00000 1662493 0.99960 0.00160 0.00055 0.62537 0.00870 2151 | NA18912 987821 1.00000 1582142 0.99950 0.00083 0.00028 0.61563 0.01183 2152 | HG03097 995043 1.00000 1569962 0.99951 0.00241 0.00093 0.61207 0.01225 2153 | HG01615 951764 1.00000 1641261 0.99935 0.00625 0.00243 0.63295 0.01043 2154 | NA20859 964712 1.00000 1667093 0.99956 0.00095 0.00030 0.63344 0.01163 2155 | NA18865 975895 1.00000 1583138 0.99957 0.00071 0.00024 0.61865 0.01233 2156 | HG02580 920365 1.00000 1665981 0.99956 0.00145 0.00051 0.64414 0.01158 2157 | HG01365 903428 1.00000 1749754 0.99954 0.00088 0.00027 0.65949 0.01112 2158 | NA19922 897428 1.00000 1738405 0.99954 0.00120 0.00038 0.65953 0.01112 2159 | HG00151 947229 1.00000 1624358 0.99952 0.00089 0.00028 0.63166 0.01129 2160 | HG03850 954058 1.00000 1652169 0.99940 0.00393 0.00148 0.63393 0.01275 2161 | NA18486 973682 1.00000 1570866 0.99950 0.00087 0.00028 0.61735 0.01330 2162 | HG03934 932239 1.00000 1681370 0.99946 0.00160 0.00054 0.64331 0.01279 2163 | HG01326 908739 1.00000 1709384 0.99953 0.00099 0.00031 0.65290 0.01178 2164 | HG01272 897574 1.00000 1732201 0.99954 0.00086 0.00026 0.65869 0.01155 2165 | HG03040 952178 1.00000 1542970 0.99955 0.00103 0.00034 0.61839 0.01335 2166 | NA19346 966805 1.00000 1573479 0.99952 0.00153 0.00053 0.61941 0.01219 2167 | HG02496 947603 1.00000 1623755 0.99955 0.00086 0.00028 0.63148 0.01193 2168 | HG01936 963739 1.00000 1595972 0.99953 0.00084 0.00027 0.62350 0.01306 2169 | HG01049 894161 1.00000 1799783 0.99955 0.00095 0.00029 0.66808 0.01051 2170 | NA18560 1031595 1.00000 1543986 0.99948 0.00090 0.00029 0.59947 0.01306 2171 | HG03838 994352 1.00000 1596083 0.99949 0.00140 0.00049 0.61614 0.01242 2172 | NA19788 946197 1.00000 1632728 0.99954 0.00114 0.00037 0.63310 0.01323 2173 | HG02277 1006087 1.00000 1547193 0.99953 0.00080 0.00025 0.60596 0.01226 2174 | NA19445 959229 1.00000 1591185 0.99951 0.00072 0.00024 0.62389 0.01345 2175 | HG02661 916526 1.00000 1667980 0.99954 0.00124 0.00040 0.64538 0.01241 2176 | HG01896 961994 1.00000 1578230 0.99953 0.00079 0.00026 0.62130 0.01226 2177 | HG03846 941885 1.00000 1677926 0.99949 0.00185 0.00064 0.64048 0.01224 2178 | HG03291 966310 1.00000 1547889 0.99951 0.00140 0.00051 0.61566 0.01306 2179 | NA19028 959340 1.00000 1611086 0.99954 0.00087 0.00029 0.62678 0.01270 2180 | NA18953 1048731 1.00000 1521532 0.99950 0.00123 0.00041 0.59198 0.01234 2181 | NA19747 947447 1.00000 1608824 0.99948 0.00139 0.00043 0.62936 0.01239 2182 | NA21087 943001 1.00000 1664011 0.99956 0.00091 0.00028 0.63828 0.01167 2183 | HG03473 946043 1.00000 1498528 0.99944 0.00173 0.00064 0.61300 0.01456 2184 | HG02589 1001089 1.00000 1629310 0.99958 0.00124 0.00044 0.61942 0.00972 2185 | HG03175 986314 1.00000 1582139 0.99954 0.00102 0.00035 0.61599 0.01204 2186 | NA11932 917336 1.00000 1648849 0.99952 0.00103 0.00032 0.64253 0.01199 2187 | HG00259 905429 1.00000 1625079 0.99953 0.00090 0.00028 0.64219 0.01237 2188 | HG00285 960977 1.00000 1616689 0.99949 0.00087 0.00028 0.62719 0.01168 2189 | HG00593 1045827 1.00000 1535057 0.99948 0.00105 0.00034 0.59478 0.01214 2190 | HG02511 975905 1.00000 1653598 0.99953 0.00082 0.00027 0.62886 0.01116 2191 | HG03045 987396 1.00000 1582788 0.99951 0.00126 0.00046 0.61583 0.01215 2192 | HG03378 967195 1.00000 1561245 0.99943 0.00193 0.00075 0.61747 0.01391 2193 | HG01323 898648 1.00000 1733873 0.99955 0.00090 0.00028 0.65864 0.01177 2194 | HG02465 965852 1.00000 1543596 0.99947 0.00094 0.00033 0.61511 0.01376 2195 | HG03941 945369 1.00000 1667565 0.99949 0.00298 0.00111 0.63820 0.01220 2196 | NA12234 913924 1.00000 1602970 0.99953 0.00096 0.00030 0.63688 0.01266 2197 | NA20864 946817 1.00000 1690391 0.99952 0.00090 0.00028 0.64098 0.01045 2198 | HG00275 913560 1.00000 1624746 0.99958 0.00083 0.00026 0.64009 0.01168 2199 | NA12717 941077 1.00000 1609474 0.99949 0.00105 0.00033 0.63103 0.01247 2200 | HG01914 919651 1.00000 1630001 0.99954 0.00073 0.00024 0.63930 0.01352 2201 | HG02513 1053540 1.00000 1530028 0.99954 0.00086 0.00028 0.59222 0.01148 2202 | HG03718 938551 1.00000 1592297 0.99942 0.00237 0.00086 0.62916 0.01353 2203 | NA12716 932818 1.00000 1621389 0.99954 0.00113 0.00035 0.63479 0.01179 2204 | HG02977 956192 1.00000 1525943 0.99948 0.00118 0.00041 0.61477 0.01378 2205 | NA20274 837326 1.00000 1840101 0.99955 0.00103 0.00030 0.68726 0.01234 2206 | HG02571 967811 1.00000 1575262 0.99950 0.00102 0.00035 0.61943 0.01330 2207 | HG00551 938833 1.00000 1718151 0.99957 0.00104 0.00033 0.64665 0.00948 2208 | HG02536 922040 1.00000 1692821 0.99954 0.00080 0.00026 0.64738 0.01181 2209 | NA19153 999331 1.00000 1580701 0.99949 0.00088 0.00030 0.61267 0.01267 2210 | NA19780 927160 1.00000 1636708 0.99951 0.00094 0.00029 0.63837 0.01273 2211 | NA20755 935048 1.00000 1647438 0.99957 0.00093 0.00029 0.63793 0.01149 2212 | NA19463 972449 1.00000 1598416 0.99955 0.00072 0.00024 0.62174 0.01193 2213 | HG01586 914907 1.00000 1653496 0.99952 0.00096 0.00030 0.64378 0.01305 2214 | HG00136 924119 1.00000 1623937 0.99954 0.00077 0.00024 0.63732 0.01264 2215 | HG00437 1032987 1.00000 1533160 0.99947 0.00089 0.00028 0.59746 0.01288 2216 | HG02679 970811 1.00000 1597282 0.99945 0.00186 0.00070 0.62197 0.01250 2217 | HG03366 996493 1.00000 1594554 0.99954 0.00134 0.00048 0.61541 0.01010 2218 | HG04019 946479 1.00000 1691888 0.99955 0.00247 0.00089 0.64126 0.01085 2219 | HG00239 942275 1.00000 1627649 0.99958 0.00123 0.00038 0.63335 0.01075 2220 | HG04056 1007890 1.00000 1469472 0.99945 0.00136 0.00045 0.59316 0.01327 2221 | HG02239 909415 1.00000 1646870 0.99948 0.00149 0.00052 0.64424 0.01346 2222 | HG00599 1043545 1.00000 1535093 0.99951 0.00094 0.00030 0.59531 0.01222 2223 | HG03380 988234 1.00000 1574033 0.99948 0.00153 0.00057 0.61431 0.01282 2224 | HG03900 963709 1.00000 1600091 0.99951 0.00091 0.00029 0.62411 0.01301 2225 | NA20514 924184 1.00000 1596785 0.99950 0.00141 0.00043 0.63340 0.01242 2226 | HG02102 1055991 1.00000 1452265 0.99945 0.00094 0.00031 0.57899 0.01329 2227 | HG03756 994023 1.00000 1586572 0.99940 0.00313 0.00119 0.61481 0.01287 2228 | HG02837 1021211 1.00000 1482740 0.99949 0.00111 0.00041 0.59216 0.01310 2229 | NA18959 1064164 1.00000 1584336 0.99959 0.00095 0.00031 0.59820 0.00905 2230 | NA19443 971780 1.00000 1605958 0.99950 0.00069 0.00023 0.62301 0.01276 2231 | HG02722 970080 1.00000 1563054 0.99952 0.00089 0.00030 0.61704 0.01318 2232 | NA19225 965508 1.00000 1551444 0.99951 0.00097 0.00032 0.61640 0.01317 2233 | NA20807 904075 1.00000 1641179 0.99954 0.00096 0.00030 0.64480 0.01153 2234 | HG02804 983922 1.00000 1593209 0.99952 0.00116 0.00040 0.61821 0.01207 2235 | HG01867 1048992 1.00000 1539183 0.99944 0.00093 0.00029 0.59470 0.01299 2236 | HG03224 970098 1.00000 1558041 0.99956 0.00080 0.00026 0.61628 0.01292 2237 | NA19732 1109432 1.00000 1361215 0.99946 0.00073 0.00024 0.55095 0.01376 2238 | HG04161 939244 1.00000 1677417 0.99957 0.00170 0.00057 0.64105 0.01144 2239 | HG00138 941449 1.00000 1641345 0.99953 0.00091 0.00028 0.63549 0.01093 2240 | HG00476 1030435 1.00000 1488603 0.99948 0.00090 0.00028 0.59094 0.01408 2241 | HG03559 981591 1.00000 1580563 0.99953 0.00111 0.00039 0.61689 0.01218 2242 | HG01359 901886 1.00000 1680116 0.99954 0.00096 0.00029 0.65070 0.01237 2243 | HG03861 964885 1.00000 1611005 0.99951 0.00216 0.00078 0.62542 0.01213 2244 | HG02728 955612 1.00000 1709058 0.99958 0.00110 0.00035 0.64138 0.00984 2245 | HG00310 916208 1.00000 1628349 0.99951 0.00103 0.00032 0.63993 0.01216 2246 | NA12814 916734 1.00000 1616871 0.99952 0.00094 0.00030 0.63817 0.01172 2247 | HG03190 981964 1.00000 1517189 0.99952 0.00122 0.00040 0.60708 0.01327 2248 | HG00155 914359 1.00000 1604634 0.99951 0.00099 0.00031 0.63701 0.01306 2249 | HG00232 939848 1.00000 1667665 0.99964 0.00098 0.00031 0.63956 0.00857 2250 | HG03985 988233 1.00000 1623962 0.99944 0.00184 0.00064 0.62168 0.01254 2251 | HG01613 930734 1.00000 1618143 0.99950 0.00090 0.00028 0.63485 0.01288 2252 | HG02953 972281 1.00000 1533960 0.99947 0.00168 0.00060 0.61206 0.01362 2253 | NA18573 1027526 1.00000 1558843 0.99951 0.00103 0.00032 0.60271 0.01229 2254 | NA20536 898174 1.00000 1628603 0.99952 0.00142 0.00043 0.64454 0.01250 2255 | NA20528 910089 1.00000 1622538 0.99955 0.00140 0.00042 0.64065 0.01232 2256 | NA19782 906405 1.00000 1663721 0.99952 0.00100 0.00031 0.64733 0.01256 2257 | HG02561 992619 1.00000 1618701 0.99955 0.00156 0.00057 0.61988 0.01025 2258 | HG00332 930693 1.00000 1655295 0.99961 0.00102 0.00032 0.64010 0.01050 2259 | NA19682 949918 1.00000 1635437 0.99950 0.00099 0.00031 0.63258 0.01274 2260 | HG00596 1078011 1.00000 1559251 0.99955 0.00093 0.00030 0.59124 0.00945 2261 | HG03642 946615 1.00000 1673604 0.99949 0.00118 0.00040 0.63873 0.01308 2262 | HG00245 947390 1.00000 1676438 0.99957 0.00135 0.00041 0.63893 0.00945 2263 | HG01985 924698 1.00000 1583851 0.99960 0.00080 0.00026 0.63138 0.01377 2264 | NA18983 1030554 1.00000 1509656 0.99947 0.00111 0.00035 0.59430 0.01319 2265 | NA20832 924207 1.00000 1635661 0.99958 0.00097 0.00031 0.63896 0.01164 2266 | HG02699 971869 1.00000 1552771 0.99954 0.00129 0.00044 0.61505 0.01210 2267 | HG03072 1008362 1.00000 1612357 0.99952 0.00373 0.00143 0.61523 0.01014 2268 | HG00180 947499 1.00000 1641633 0.99952 0.00113 0.00035 0.63405 0.01118 2269 | NA19391 973290 1.00000 1588895 0.99951 0.00081 0.00026 0.62013 0.01251 2270 | NA19321 964207 1.00000 1611244 0.99955 0.00068 0.00023 0.62562 0.01267 2271 | HG02651 918624 1.00000 1669989 0.99948 0.00167 0.00057 0.64513 0.01347 2272 | HG03995 958608 1.00000 1712485 0.99947 0.00471 0.00180 0.64112 0.00990 2273 | HG02392 1076552 1.00000 1482273 0.99949 0.00116 0.00039 0.57928 0.01208 2274 | HG02979 989298 1.00000 1565701 0.99948 0.00085 0.00029 0.61280 0.01196 2275 | HG03189 977618 1.00000 1566721 0.99950 0.00097 0.00034 0.61577 0.01280 2276 | HG02678 1012209 1.00000 1493711 0.99947 0.00118 0.00043 0.59607 0.01334 2277 | HG03279 1001561 1.00000 1594205 0.99951 0.00264 0.00100 0.61416 0.01082 2278 | HG02231 921956 1.00000 1598555 0.99947 0.00154 0.00056 0.63422 0.01299 2279 | NA20908 920939 1.00000 1636469 0.99954 0.00103 0.00031 0.63989 0.01305 2280 | HG02808 990617 1.00000 1532047 0.99944 0.00136 0.00049 0.60731 0.01365 2281 | HG01979 1003970 1.00000 1564497 0.99946 0.00104 0.00034 0.60912 0.01220 2282 | HG03280 1020647 1.00000 1576266 0.99956 0.00101 0.00034 0.60698 0.01115 2283 | HG01610 911142 1.00000 1590766 0.99952 0.00087 0.00027 0.63582 0.01268 2284 | NA19172 965773 1.00000 1540638 0.99947 0.00109 0.00039 0.61468 0.01299 2285 | HG02861 977143 1.00000 1586361 0.99953 0.00126 0.00045 0.61883 0.01274 2286 | HG01073 910843 1.00000 1685879 0.99954 0.00088 0.00027 0.64923 0.01132 2287 | NA21137 922643 1.00000 1631367 0.99949 0.00105 0.00032 0.63875 0.01304 2288 | NA20589 918292 1.00000 1628159 0.99952 0.00132 0.00040 0.63938 0.01207 2289 | HG02621 966077 1.00000 1547653 0.99951 0.00140 0.00051 0.61568 0.01295 2290 | NA18539 1068402 1.00000 1551779 0.99949 0.00107 0.00034 0.59224 0.01121 2291 | HG02014 926373 1.00000 1644978 0.99956 0.00097 0.00033 0.63973 0.01230 2292 | HG01390 889846 1.00000 1752769 0.99956 0.00090 0.00028 0.66327 0.01101 2293 | HG00595 1032500 1.00000 1518826 0.99945 0.00079 0.00025 0.59531 0.01315 2294 | NA20892 941045 1.00000 1620359 0.99960 0.00106 0.00032 0.63261 0.01188 2295 | HG02805 1022272 1.00000 1458210 0.99950 0.00124 0.00043 0.58787 0.01273 2296 | HG00707 1041307 1.00000 1523107 0.99949 0.00093 0.00029 0.59394 0.01260 2297 | HG01844 1026184 1.00000 1539445 0.99948 0.00097 0.00031 0.60003 0.01342 2298 | HG01054 883572 1.00000 1649853 0.99952 0.00095 0.00030 0.65123 0.01387 2299 | HG03372 1005709 1.00000 1592999 0.99955 0.00118 0.00042 0.61300 0.01055 2300 | HG00449 1042966 1.00000 1523433 0.99952 0.00083 0.00027 0.59361 0.01221 2301 | NA20282 877867 1.00000 1701262 0.99928 0.00096 0.00031 0.65963 0.01805 2302 | HG02002 1030671 1.00000 1527619 0.99946 0.00081 0.00026 0.59713 0.01234 2303 | HG02737 924102 1.00000 1690963 0.99953 0.00111 0.00034 0.64662 0.01216 2304 | HG02178 1044980 1.00000 1520873 0.99950 0.00085 0.00027 0.59274 0.01219 2305 | NA19734 949795 1.00000 1578416 0.99957 0.00076 0.00024 0.62432 0.01272 2306 | HG02585 954769 1.00000 1521435 0.99935 0.00338 0.00135 0.61442 0.01408 2307 | NA19655 909381 1.00000 1693055 0.99833 0.01423 0.00545 0.65057 0.01368 2308 | HG00458 1044348 1.00000 1552411 0.99950 0.00090 0.00029 0.59783 0.01214 2309 | HG01183 927123 1.00000 1727284 0.99953 0.00120 0.00038 0.65072 0.01098 2310 | HG03354 973221 1.00000 1549735 0.99937 0.00321 0.00126 0.61425 0.01323 2311 | HG03750 952016 1.00000 1657807 0.99955 0.00087 0.00028 0.63522 0.01133 2312 | HG03848 923742 1.00000 1674374 0.99949 0.00263 0.00096 0.64446 0.01228 2313 | HG03951 894193 1.00000 1628586 0.99950 0.00151 0.00051 0.64555 0.01384 2314 | NA18516 989667 1.00000 1559381 0.99952 0.00086 0.00029 0.61175 0.01251 2315 | HG01709 895781 1.00000 1655318 0.99954 0.00102 0.00032 0.64886 0.01232 2316 | HG03124 984020 1.00000 1565968 0.99952 0.00129 0.00046 0.61411 0.01196 2317 | NA18870 999940 1.00000 1574827 0.99955 0.00094 0.00033 0.61164 0.01133 2318 | NA20538 913488 1.00000 1626306 0.99954 0.00140 0.00043 0.64033 0.01251 2319 | NA19327 984821 1.00000 1645614 0.99960 0.00100 0.00032 0.62561 0.00977 2320 | NA18614 1022098 1.00000 1513927 0.99949 0.00086 0.00027 0.59697 0.01349 2321 | HG02073 1046468 1.00000 1526360 0.99951 0.00080 0.00026 0.59326 0.01221 2322 | HG01923 1078612 1.00000 1378914 0.99944 0.00082 0.00027 0.56110 0.01308 2323 | HG03680 924491 1.00000 1638383 0.99948 0.00170 0.00057 0.63928 0.01309 2324 | NA19338 948283 1.00000 1603351 0.99954 0.00077 0.00025 0.62836 0.01341 2325 | HG03986 932322 1.00000 1651418 0.99949 0.00293 0.00107 0.63916 0.01237 2326 | NA19914 879632 1.00000 1696095 0.99954 0.00078 0.00024 0.65849 0.01284 2327 | NA18510 951164 1.00000 1542744 0.99945 0.00077 0.00026 0.61861 0.01489 2328 | HG00879 1015733 1.00000 1485156 0.99943 0.00087 0.00028 0.59385 0.01428 2329 | HG02052 951654 1.00000 1559705 0.99953 0.00081 0.00026 0.62106 0.01290 2330 | NA12006 904499 1.00000 1630561 0.99950 0.00125 0.00039 0.64320 0.01265 2331 | NA20359 908575 1.00000 1647817 0.99953 0.00128 0.00040 0.64459 0.01282 2332 | HG00513 1083977 1.00000 1561744 0.99967 0.00109 0.00035 0.59029 0.00828 2333 | NA19720 973609 1.00000 1661048 0.99955 0.00115 0.00035 0.63046 0.01080 2334 | NA07056 911468 1.00000 1611610 0.99956 0.00097 0.00031 0.63875 0.01219 2335 | HG00379 938130 1.00000 1632786 0.99950 0.00086 0.00027 0.63510 0.01180 2336 | HG01786 951602 1.00000 1664984 0.99963 0.00094 0.00030 0.63632 0.00843 2337 | HG01565 1005822 1.00000 1622432 0.99952 0.00100 0.00032 0.61730 0.00991 2338 | HG03882 930797 1.00000 1646335 0.99950 0.00087 0.00028 0.63882 0.01253 2339 | HG03479 987802 1.00000 1616465 0.99950 0.00120 0.00043 0.62070 0.01151 2340 | NA20126 882474 1.00000 1727725 0.99953 0.00096 0.00030 0.66191 0.01298 2341 | HG02586 969060 1.00000 1559888 0.99949 0.00120 0.00045 0.61681 0.01326 2342 | HG01945 1030980 1.00000 1521779 0.99946 0.00084 0.00027 0.59613 0.01321 2343 | NA19678 923551 1.00000 1737447 0.99958 0.00105 0.00033 0.65293 0.00958 2344 | HG01860 1034130 1.00000 1533832 0.99952 0.00094 0.00030 0.59730 0.01343 2345 | HG01162 892618 1.00000 1670749 0.99958 0.00092 0.00028 0.65178 0.01286 2346 | HG02658 1054328 1.00000 1419833 0.99943 0.00113 0.00037 0.57386 0.01386 2347 | HG03775 959558 1.00000 1641876 0.99952 0.00118 0.00039 0.63114 0.01220 2348 | HG02353 1016378 1.00000 1521841 0.99950 0.00090 0.00029 0.59957 0.01332 2349 | NA19006 1039751 1.00000 1518118 0.99951 0.00100 0.00031 0.59351 0.01290 2350 | HG02490 975395 1.00000 1615102 0.99954 0.00108 0.00036 0.62347 0.01096 2351 | HG01872 1044197 1.00000 1561239 0.99951 0.00083 0.00026 0.59922 0.01153 2352 | HG03082 998033 1.00000 1578151 0.99957 0.00180 0.00068 0.61259 0.01107 2353 | HG01797 1043823 1.00000 1541172 0.99948 0.00088 0.00028 0.59620 0.01292 2354 | NA20503 949317 1.00000 1647828 0.99957 0.00100 0.00032 0.63448 0.01101 2355 | NA12046 911118 1.00000 1616281 0.99952 0.00098 0.00030 0.63950 0.01262 2356 | HG02127 1052673 1.00000 1531119 0.99947 0.00080 0.00025 0.59259 0.01257 2357 | HG02371 1029140 1.00000 1511636 0.99947 0.00093 0.00029 0.59495 0.01364 2358 | HG02312 954005 1.00000 1640171 0.99951 0.00087 0.00027 0.63225 0.01211 2359 | HG02105 1069743 1.00000 1383435 0.99951 0.00080 0.00027 0.56394 0.01378 2360 | HG00463 1059347 1.00000 1537131 0.99947 0.00098 0.00032 0.59201 0.01232 2361 | HG02819 998087 1.00000 1563509 0.99924 0.00620 0.00255 0.61037 0.01225 2362 | HG02420 840364 1.00000 1775808 0.99954 0.00089 0.00027 0.67878 0.01339 2363 | HG00436 1022417 1.00000 1528275 0.99947 0.00085 0.00027 0.59916 0.01362 2364 | HG02003 1026718 1.00000 1478805 0.99945 0.00100 0.00034 0.59022 0.01356 2365 | HG02681 912864 1.00000 1671895 0.99955 0.00166 0.00056 0.64683 0.01192 2366 | HG00580 1054484 1.00000 1551727 0.99946 0.00091 0.00029 0.59540 0.01253 2367 | NA19118 987795 1.00000 1626706 0.99954 0.00087 0.00029 0.62219 0.01085 2368 | NA20509 938504 1.00000 1649191 0.99954 0.00095 0.00030 0.63732 0.01223 2369 | HG00355 953138 1.00000 1676044 0.99958 0.00097 0.00031 0.63748 0.00916 2370 | HG03547 973186 1.00000 1574318 0.99945 0.00148 0.00054 0.61798 0.01309 2371 | HG03515 981551 1.00000 1557514 0.99953 0.00128 0.00047 0.61342 0.01320 2372 | HG03367 1014522 1.00000 1588357 0.99952 0.00130 0.00048 0.61023 0.01119 2373 | HG03910 961946 1.00000 1646997 0.99952 0.00112 0.00036 0.63129 0.01209 2374 | HG02130 1031322 1.00000 1540885 0.99951 0.00092 0.00030 0.59905 0.01180 2375 | HG01762 938356 1.00000 1592110 0.99954 0.00093 0.00029 0.62918 0.01158 2376 | HG01474 900574 1.00000 1628118 0.99951 0.00091 0.00028 0.64386 0.01295 2377 | HG01781 929381 1.00000 1665495 0.99951 0.00107 0.00034 0.64184 0.01102 2378 | NA19083 1009563 1.00000 1508881 0.99944 0.00084 0.00027 0.59913 0.01451 2379 | HG03963 956191 1.00000 1707594 0.99954 0.00244 0.00087 0.64104 0.00998 2380 | HG02760 939208 1.00000 1525329 0.99953 0.00093 0.00032 0.61891 0.01354 2381 | HG01583 937129 1.00000 1711556 0.99962 0.00088 0.00027 0.64619 0.01149 2382 | HG04134 926890 1.00000 1701945 0.99944 0.00264 0.00092 0.64741 0.01262 2383 | NA10847 927325 1.00000 1615262 0.99954 0.00100 0.00031 0.63528 0.01217 2384 | HG01765 917068 1.00000 1599386 0.99953 0.00104 0.00032 0.63557 0.01270 2385 | HG04033 970476 1.00000 1690391 0.99950 0.00292 0.00107 0.63528 0.01064 2386 | NA20866 948069 1.00000 1685234 0.99954 0.00090 0.00028 0.63997 0.01087 2387 | HG03271 980915 1.00000 1563951 0.99947 0.00147 0.00055 0.61455 0.01433 2388 | HG04042 941369 1.00000 1689942 0.99950 0.00410 0.00154 0.64224 0.01129 2389 | HG03112 965522 1.00000 1562657 0.99953 0.00098 0.00032 0.61810 0.01202 2390 | NA20869 953857 1.00000 1688104 0.99954 0.00109 0.00034 0.63896 0.01069 2391 | HG03829 930871 1.00000 1608275 0.99952 0.00117 0.00038 0.63339 0.01330 2392 | NA20320 883193 1.00000 1556014 0.99954 0.00139 0.00044 0.63792 0.01457 2393 | HG02386 1003332 1.00000 1507217 0.99948 0.00093 0.00030 0.60035 0.01322 2394 | HG03437 969692 1.00000 1577748 0.99952 0.00143 0.00052 0.61935 0.01256 2395 | HG01353 926099 1.00000 1739470 0.99957 0.00102 0.00032 0.65257 0.00901 2396 | NA19455 957997 1.00000 1606586 0.99958 0.00078 0.00026 0.62645 0.01197 2397 | HG02654 926429 1.00000 1689523 0.99954 0.00196 0.00068 0.64585 0.01160 2398 | HG02839 985220 1.00000 1588536 0.99951 0.00100 0.00034 0.61721 0.01221 2399 | HG04222 961709 1.00000 1712763 0.99954 0.00138 0.00044 0.64041 0.01003 2400 | HG02675 972485 1.00000 1556214 0.99950 0.00111 0.00038 0.61542 0.01284 2401 | HG03433 995126 1.00000 1603673 0.99958 0.00114 0.00040 0.61708 0.00997 2402 | NA18644 1060609 1.00000 1574229 0.99960 0.00152 0.00047 0.59747 0.00870 2403 | HG01275 965792 1.00000 1527402 0.99945 0.00089 0.00029 0.61263 0.01301 2404 | HG02343 905558 1.00000 1665764 0.99957 0.00130 0.00046 0.64782 0.01285 2405 | NA19384 964902 1.00000 1586676 0.99956 0.00072 0.00023 0.62184 0.01329 2406 | NA19752 946144 1.00000 1615940 0.99952 0.00079 0.00025 0.63071 0.01277 2407 | HG04189 947698 1.00000 1695541 0.99944 0.00355 0.00131 0.64146 0.01140 2408 | HG03311 994307 1.00000 1565308 0.99955 0.00103 0.00036 0.61154 0.01169 2409 | HG00684 1021832 1.00000 1498123 0.99952 0.00084 0.00027 0.59450 0.01332 2410 | HG00739 907967 1.00000 1679842 0.99952 0.00144 0.00045 0.64914 0.01148 2411 | HG01710 917388 1.00000 1658053 0.99959 0.00098 0.00030 0.64379 0.01112 2412 | HG02187 1024134 1.00000 1538625 0.99947 0.00127 0.00042 0.60038 0.01288 2413 | HG01794 1058822 1.00000 1498251 0.99949 0.00092 0.00029 0.58592 0.01261 2414 | HG02086 1013217 1.00000 1528822 0.99951 0.00106 0.00035 0.60142 0.01294 2415 | NA20891 919793 1.00000 1633940 0.99927 0.00476 0.00183 0.63982 0.01412 2416 | HG01784 916375 1.00000 1633729 0.99953 0.00086 0.00027 0.64065 0.01207 2417 | HG01598 1034316 1.00000 1550080 0.99953 0.00081 0.00026 0.59978 0.01280 2418 | HG00524 1022842 1.00000 1563960 0.99951 0.00096 0.00031 0.60459 0.01232 2419 | HG03388 995332 1.00000 1569073 0.99949 0.00225 0.00087 0.61187 0.01186 2420 | HG01882 959949 1.00000 1602997 0.99955 0.00075 0.00025 0.62545 0.01212 2421 | NA20821 910631 1.00000 1645422 0.99950 0.00087 0.00027 0.64374 0.01220 2422 | NA19372 980510 1.00000 1598973 0.99959 0.00089 0.00030 0.61988 0.01159 2423 | NA19625 879758 1.00000 1792979 0.99954 0.00091 0.00028 0.67084 0.01209 2424 | HG02286 1003087 1.00000 1531993 0.99948 0.00079 0.00025 0.60432 0.01286 2425 | HG01485 893162 1.00000 1772656 0.99957 0.00089 0.00028 0.66496 0.01131 2426 | HG03722 991817 1.00000 1583427 0.99951 0.00159 0.00057 0.61486 0.01138 2427 | NA20520 933803 1.00000 1680562 0.99955 0.00098 0.00030 0.64282 0.01048 2428 | HG02128 1037882 1.00000 1528531 0.99952 0.00085 0.00027 0.59559 0.01256 2429 | NA20783 930672 1.00000 1650122 0.99947 0.00093 0.00029 0.63939 0.01253 2430 | NA12751 934544 1.00000 1660171 0.99954 0.00108 0.00033 0.63983 0.01101 2431 | HG03247 975835 1.00000 1600132 0.99953 0.00102 0.00035 0.62118 0.01293 2432 | NA21129 919780 1.00000 1593818 0.99957 0.00093 0.00029 0.63408 0.01369 2433 | HG01405 912835 1.00000 1716342 0.99951 0.00092 0.00028 0.65281 0.01206 2434 | HG01976 991847 1.00000 1565844 0.99957 0.00090 0.00029 0.61221 0.01196 2435 | HG03709 927591 1.00000 1677586 0.99958 0.00134 0.00044 0.64394 0.01227 2436 | NA19068 1052585 1.00000 1539685 0.99950 0.00124 0.00039 0.59395 0.01177 2437 | HG01412 894495 1.00000 1711035 0.99957 0.00100 0.00030 0.65669 0.01170 2438 | NA18973 1050645 1.00000 1566579 0.99949 0.00105 0.00034 0.59857 0.01187 2439 | HG02471 966888 1.00000 1626914 0.99952 0.00087 0.00029 0.62723 0.01180 2440 | HG02783 954631 1.00000 1660437 0.99950 0.00100 0.00032 0.63495 0.01221 2441 | HG03815 948948 1.00000 1707289 0.99955 0.00140 0.00047 0.64275 0.01092 2442 | NA12286 918599 1.00000 1634522 0.99952 0.00139 0.00044 0.64021 0.01193 2443 | NA19320 968683 1.00000 1603952 0.99955 0.00076 0.00025 0.62347 0.01215 2444 | HG03130 1018950 1.00000 1595239 0.99952 0.00148 0.00055 0.61022 0.01048 2445 | NA18488 962799 1.00000 1561743 0.99954 0.00084 0.00027 0.61862 0.01365 2446 | HG00240 893146 1.00000 1574395 0.99951 0.00159 0.00057 0.63804 0.01351 2447 | HG03021 954749 1.00000 1659035 0.99952 0.00162 0.00055 0.63473 0.01250 2448 | NA21094 971412 1.00000 1685488 0.99951 0.00107 0.00033 0.63438 0.00952 2449 | HG00261 925097 1.00000 1596478 0.99954 0.00099 0.00030 0.63313 0.01278 2450 | HG02315 910848 1.00000 1628353 0.99953 0.00083 0.00027 0.64129 0.01343 2451 | HG01991 1002958 1.00000 1498508 0.99943 0.00078 0.00025 0.59905 0.01462 2452 | HG03870 907159 1.00000 1610683 0.99945 0.00284 0.00102 0.63971 0.01403 2453 | NA19312 970128 1.00000 1610036 0.99950 0.00081 0.00027 0.62401 0.01208 2454 | NA18960 1055306 1.00000 1554290 0.99951 0.00093 0.00030 0.59561 0.01202 2455 | HG01167 920051 1.00000 1768113 0.99959 0.00098 0.00031 0.65774 0.00915 2456 | HG02624 1000409 1.00000 1610282 0.99944 0.00191 0.00073 0.61680 0.01174 2457 | HG03518 974772 1.00000 1576856 0.99956 0.00161 0.00059 0.61798 0.01179 2458 | HG00131 938373 1.00000 1615934 0.99957 0.00093 0.00029 0.63263 0.01188 2459 | HG02816 993739 1.00000 1600923 0.99949 0.00102 0.00034 0.61701 0.01232 2460 | HG03960 916906 1.00000 1627152 0.99948 0.00228 0.00082 0.63959 0.01351 2461 | NA19761 931793 1.00000 1601879 0.99950 0.00099 0.00031 0.63224 0.01390 2462 | NA20533 928686 1.00000 1623194 0.99939 0.00133 0.00041 0.63608 0.01406 2463 | HG01173 884987 1.00000 1673561 0.99953 0.00090 0.00028 0.65411 0.01268 2464 | NA21088 956837 1.00000 1669283 0.99953 0.00141 0.00043 0.63565 0.01139 2465 | HG02419 938936 1.00000 1574462 0.99955 0.00086 0.00028 0.62643 0.01336 2466 | HG02152 1052976 1.00000 1511528 0.99957 0.00078 0.00025 0.58940 0.01243 2467 | HG01140 939525 1.00000 1685636 0.99955 0.00097 0.00030 0.64211 0.01058 2468 | HG01879 920786 1.00000 1682315 0.99952 0.00110 0.00038 0.64627 0.01253 2469 | NA12546 910474 1.00000 1605580 0.99956 0.00097 0.00030 0.63813 0.01218 2470 | HG02351 1041777 1.00000 1570188 0.99944 0.00093 0.00030 0.60115 0.01283 2471 | HG03920 910845 1.00000 1626795 0.99942 0.00210 0.00074 0.64107 0.01322 2472 | HG01479 909535 1.00000 1664738 0.99956 0.00090 0.00028 0.64668 0.01220 2473 | HG00097 927997 1.00000 1618657 0.99954 0.00095 0.00030 0.63560 0.01187 2474 | NA18949 1044896 1.00000 1524500 0.99947 0.00092 0.00029 0.59333 0.01230 2475 | NA20504 921947 1.00000 1644098 0.99949 0.00155 0.00050 0.64071 0.01164 2476 | NA20901 934368 1.00000 1697492 0.99955 0.00103 0.00032 0.64498 0.01208 2477 | HG00592 1045627 1.00000 1563157 0.99949 0.00109 0.00034 0.59919 0.01163 2478 | NA18602 1016321 1.00000 1508732 0.99938 0.00143 0.00050 0.59751 0.01472 2479 | HG01886 934673 1.00000 1649827 0.99947 0.00340 0.00132 0.63835 0.01199 2480 | HG01942 1045987 1.00000 1494208 0.99949 0.00084 0.00027 0.58823 0.01216 2481 | HG02546 955764 1.00000 1626392 0.99956 0.00082 0.00026 0.62986 0.01221 2482 | HG01398 925229 1.00000 1659363 0.99954 0.00092 0.00029 0.64202 0.01189 2483 | NA20801 924405 1.00000 1659387 0.99949 0.00096 0.00030 0.64223 0.01216 2484 | HG01259 911910 1.00000 1662912 0.99956 0.00110 0.00034 0.64584 0.01098 2485 | HG02558 952613 1.00000 1634346 0.99950 0.00139 0.00050 0.63176 0.01224 2486 | HG03517 1011474 1.00000 1589597 0.99949 0.00183 0.00068 0.61113 0.01017 2487 | HG01250 941248 1.00000 1718339 0.99953 0.00093 0.00029 0.64609 0.01065 2488 | NA18533 1037006 1.00000 1516264 0.99952 0.00074 0.00024 0.59385 0.01307 2489 | HG01254 912536 1.00000 1766894 0.99960 0.00116 0.00036 0.65943 0.00956 2490 | HG03369 1002797 1.00000 1601057 0.99955 0.00156 0.00055 0.61488 0.01021 2491 | NA19184 961326 1.00000 1535966 0.99953 0.00070 0.00023 0.61505 0.01383 2492 | HG00309 927241 1.00000 1643164 0.99950 0.00087 0.00027 0.63926 0.01228 2493 | HG01051 875244 1.00000 1690189 0.99950 0.00099 0.00033 0.65883 0.01292 2494 | NA19351 975926 1.00000 1593297 0.99952 0.00098 0.00033 0.62015 0.01258 2495 | HG02384 1013217 1.00000 1493283 0.99947 0.00092 0.00030 0.59576 0.01426 2496 | HG03899 964404 1.00000 1624513 0.99952 0.00195 0.00068 0.62749 0.01128 2497 | NA11918 894390 1.00000 1596188 0.99954 0.00144 0.00047 0.64089 0.01292 2498 | NA19393 978447 1.00000 1614122 0.99956 0.00088 0.00028 0.62260 0.01179 2499 | NA19750 913677 1.00000 1668484 0.99956 0.00092 0.00030 0.64616 0.01231 2500 | HG03297 969749 1.00000 1539357 0.99949 0.00127 0.00046 0.61351 0.01264 2501 | NA19792 917282 1.00000 1694854 0.99957 0.00077 0.00024 0.64884 0.01187 2502 | HG01072 871452 1.00000 1615589 0.99953 0.00084 0.00026 0.64960 0.01382 2503 | HG03968 957272 1.00000 1685165 0.99951 0.00228 0.00081 0.63773 0.01092 2504 | NA19017 980638 1.00000 1626342 0.99952 0.00097 0.00032 0.62384 0.01109 2505 | HG03370 977140 1.00000 1560227 0.99947 0.00103 0.00036 0.61490 0.01361 2506 | -------------------------------------------------------------------------------- /example/Contamination_CHARR_FREEMIX_scatter.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HTGenomeAnalysisUnit/SCE-VCF/37366a05d0b59f89c37292dc5e0233b817de1e1d/example/Contamination_CHARR_FREEMIX_scatter.png -------------------------------------------------------------------------------- /example/Contamination_CHARR_FREEMIX_upset.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HTGenomeAnalysisUnit/SCE-VCF/37366a05d0b59f89c37292dc5e0233b817de1e1d/example/Contamination_CHARR_FREEMIX_upset.png -------------------------------------------------------------------------------- /example/GATKvsDV_metric_distribution.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HTGenomeAnalysisUnit/SCE-VCF/37366a05d0b59f89c37292dc5e0233b817de1e1d/example/GATKvsDV_metric_distribution.png -------------------------------------------------------------------------------- /example/GATKvsDV_metric_distribution.tsv: -------------------------------------------------------------------------------- 1 | skim_type skim_variable cohort n_missing complete_rate numeric.mean numeric.sd numeric.p0 numeric.p25 numeric.p50 numeric.p75 numeric.p100 numeric.hist 2 | numeric HQ_HOM 1000G_DV 0 1 993046.562699681 51980.4747511067 822850 952003.75 982652 1027265.5 1187164 ▁▇▇▅▁ 3 | numeric HQ_HOM 1000G_GATK 0 1 966094.978833866 51406.1891690688 797941 925807.25 956191.5 1001533.25 1158798 ▁▇▇▅▁ 4 | numeric HQ_HOM_RATE 1000G_DV 0 1 1 0 1 1 1 1 1 ▁▁▇▁▁ 5 | numeric HQ_HOM_RATE 1000G_GATK 0 1 1 0 1 1 1 1 1 ▁▁▇▁▁ 6 | numeric HQ_HET 1000G_DV 0 1 1635474.96285942 67868.4185990925 1366229 1585131.25 1638983 1683104.25 1914083 ▁▃▇▃▁ 7 | numeric HQ_HET 1000G_GATK 0 1 1606735.19129393 68478.0025615727 1338634 1559059.75 1608867.5 1654729.75 1875731 ▁▃▇▃▁ 8 | numeric HQ_HET_RATE 1000G_DV 0 1 0.977066325878594 0.000872943276093752 0.97244 0.97657 0.97717 0.9776625 0.97963 ▁▁▃▇▁ 9 | numeric HQ_HET_RATE 1000G_GATK 0 1 0.999511749201278 6.96229744342938e-05 0.99808 0.99949 0.99952 0.99955 0.99972 ▁▁▁▁▇ 10 | numeric CHARR 1000G_DV 0 1 0.00433170926517572 0.000900664043289932 0.00302 0.00384 0.00414 0.00458 0.01646 ▇▁▁▁▁ 11 | numeric CHARR 1000G_GATK 0 1 0.00123703674121406 0.000817865001852028 0.00067 0.00088 0.00098 0.00125 0.01423 ▇▁▁▁▁ 12 | numeric MEAN_REF_AB_HOM_ALT 1000G_DV 0 1 0.00138748801916933 0.000332898084246269 0.00099 0.00121 0.00131 0.00146 0.00609 ▇▁▁▁▁ 13 | numeric MEAN_REF_AB_HOM_ALT 1000G_GATK 0 1 0.000417220447284345 0.00032533547289119 0.00022 0.00028 0.00031 0.00041 0.0055 ▇▁▁▁▁ 14 | numeric HETEROZYGOSITY_RATE 1000G_DV 0 1 0.622092907348243 0.0210560497239589 0.53575 0.6083175 0.62764 0.63801 0.69935 ▁▅▇▇▁ 15 | numeric HETEROZYGOSITY_RATE 1000G_GATK 0 1 0.62438625399361 0.0210073481680226 0.53854 0.611015 0.630085 0.6401225 0.70156 ▁▅▇▇▁ 16 | numeric INCONSISTENT_AB_HET_RATE 1000G_DV 0 1 0.0111438817891374 0.00156913603047832 0.00372 0.01054 0.01132 0.01204 0.02415 ▁▇▃▁▁ 17 | numeric INCONSISTENT_AB_HET_RATE 1000G_GATK 0 1 0.0122158506389776 0.00125348603604688 0.00732 0.01157 0.01227 0.01292 0.02745 ▂▇▁▁▁ 18 | -------------------------------------------------------------------------------- /example/README.md: -------------------------------------------------------------------------------- 1 | # Example datasets and simulations 2 | 3 | ## Simulation results 4 | 5 | To simulate contamination we generated mixed samples using 2 samples from the GIAB reference datasets. Briefly, we generated a 30X BAM file of NA24631 GIAB sample and then mixed this with various proportion of reads from NA24385. See results below and plots in the example folder. 6 | 7 | |SAMPLE |HQ_HOM |HQ_HOM_RATE|HQ_HET |HQ_HET_RATE|CHARR |MEAN_REF_AB_HOM_ALT|HETEROZYGOSITY_RATE|INCONSISTENT_AB_HET_RATE| 8 | |---------------|-------|-----------|-------|-----------|-------|-------------------|-------------------|------------------------| 9 | |original_sample|1101063|1.00000 |1516921|0.96191 |0.01144|0.00371 |0.57942 |0.00999 | 10 | |cont_0.99_0.01 |1092683|1.00000 |1515890|0.96113 |0.01669|0.00598 |0.58112 |0.01068 | 11 | |cont_0.98_0.02 |1079498|1.00000 |1514989|0.95938 |0.02134|0.00794 |0.58393 |0.01249 | 12 | |cont_0.97_0.03 |1062034|1.00000 |1514340|0.95648 |0.02543|0.00963 |0.58778 |0.01580 | 13 | |cont_0.96_0.04 |1040781|1.00000 |1514274|0.95240 |0.02899|0.01107 |0.59266 |0.02079 | 14 | |cont_0.95_0.05 |1027437|1.00000 |1512849|0.94977 |0.03044|0.01164 |0.59554 |0.02412 | 15 | |cont_0.85_0.15 |741203 |1.00000 |1578589|0.86162 |0.04422|0.01578 |0.68049 |0.15782 | 16 | |cont_0.9_0.1 |874280 |1.00000 |1532181|0.90654 |0.04179|0.01559 |0.63669 |0.08385 | 17 | |cont_0.8_0.2 |635342 |1.00000 |1652251|0.82522 |0.04192|0.01431 |0.72227 |0.22597 | 18 | |cont_0.7_0.3 |505642 |1.00000 |1832859|0.78729 |0.03092|0.00972 |0.78378 |0.29380 | 19 | |cont_0.5_0.5 |409987 |1.00000 |2103835|0.78209 |0.01383|0.00371 |0.83691 |0.29484 | 20 | 21 | The simulation results are in simulation_results.tsv, and the plot_simulation_results.R script can be used to generate the plot below. 22 | 23 | ### Metrics plot 24 | 25 | ![Metrics plot](simulation_metric_plot.png) 26 | 27 | ## Comparison with freemix 28 | 29 | We compared our computed metrics with the popular freemix tool on a set of 3474 WGS samples sequenced at 15-20X mean coverage. The results showed that combining the 3 computed metrics and especially CHARR and INCONSISTENT_AB_HET_RATE, we can detect contamination with high accuracy across the whole spectrum of contamination levels. 30 | 31 | In the following plot, we applied the warning (dashed line) and fail (solid line) criteria described in the README to mark the samples and compared CHARR and FREEMIX values. 32 | 33 | ![Metrics plot](Contamination_CHARR_FREEMIX_scatter.png) 34 | 35 | The upset plot shows that evaluating together CHARR and INCONSISTENT_AB_HET_RATE, we can detect contamination with high accuracy and results are consistent with the freemix tool. 36 | 37 | ![Upset plot](Contamination_CHARR_FREEMIX_upset.png) 38 | 39 | 40 | ## Reference datasets 41 | 42 | We used 1000G cohort variant calling generated using GATK or DeepVariant from [Yun T. et al., 2021](https://academic.oup.com/bioinformatics/article/36/24/5582/6064144) to generate two reference datasets using our tool. The reference datasets are available in the example folder as 1000G_DeepVar.sce.tsv and 1000G_GATK.sce.tsv. 43 | 44 | Comparing these 2 datasets, we observed that data generated with the 2 variant callers have specific distributions of the CHARR values. 45 | 46 | ![CHARR plot](GATKvsDV_metric_distribution.png) 47 | -------------------------------------------------------------------------------- /example/compare.R: -------------------------------------------------------------------------------- 1 | library(ggplot2) 2 | library(tidyr) 3 | library(dplyr) 4 | library(skimr) 5 | 6 | cont_1000g_dv <- read.csv("1000G_DeepVar.sce.tsv", header=T, sep="\t") 7 | cont_1000g_GATK <- read.csv("1000G_GATK.sce.tsv", header=T, sep="\t") 8 | 9 | cont_1000g_dv$cohort <- "1000G_DV" 10 | cont_1000g_GATK$cohort <- "1000G_GATK" 11 | 12 | df <- rbind(cont_1000g_dv, cont_1000g_GATK) 13 | df_plot <- df %>% rename( SAMPLE = X.SAMPLE ) %>% select(-HQ_HOM_RATE,-HQ_HET_RATE) %>% 14 | pivot_longer(HQ_HOM:INCONSISTENT_AB_HET_RATE, names_to="metric", values_to = "value") 15 | 16 | p <- ggplot(df_plot, aes(x=value, color=cohort)) + geom_density() + facet_wrap(~metric, scales="free") + theme_bw() 17 | ggsave(plot = p, filename = "GATKvsDV_metric_distribution.png", device="png", height = 7, width = 10) 18 | 19 | sum_df <- df %>% group_by(cohort) %>% skim(HQ_HOM:INCONSISTENT_AB_HET_RATE) 20 | write.table(sum_df, file = "GATKvsDV_metric_distribution.tsv", sep="\t", row.names=F, quote=F) 21 | -------------------------------------------------------------------------------- /example/plot_simulation_results.R: -------------------------------------------------------------------------------- 1 | library(ggplot2) 2 | library(tidyr) 3 | library(dplyr) 4 | 5 | df <- read.table("simulation_results.tsv", header=T, comment.char = "", sep="\t") 6 | df <- df %>% separate(X.SAMPLE, into=c("id","original","cont_fraction"),sep="_") %>% 7 | select(-original) %>% replace_na(list(cont_fraction="0")) 8 | df <- df %>% mutate(across(cont_fraction:INCONSISTENT_AB_HET_RATE, as.numeric)) 9 | 10 | df_plot <- df %>% select(cont_fraction,CHARR, HETEROZYGOSITY_RATE, INCONSISTENT_AB_HET_RATE) %>% 11 | pivot_longer(CHARR:INCONSISTENT_AB_HET_RATE, names_to = "metric", values_to = "value") 12 | p <- ggplot(df_plot, aes(x=cont_fraction, y=value)) + geom_point() + geom_smooth() + 13 | facet_wrap(~metric, scales="free_y") + theme_bw() 14 | ggsave(p, file="simulation_metric_plot.pdf", device="pdf", height=4, width=8, dpi=150) 15 | ggsave(p, file="simulation_metric_plot.png", device="png", height=4, width=8, dpi=150) 16 | -------------------------------------------------------------------------------- /example/simulation_metric_plot.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HTGenomeAnalysisUnit/SCE-VCF/37366a05d0b59f89c37292dc5e0233b817de1e1d/example/simulation_metric_plot.pdf -------------------------------------------------------------------------------- /example/simulation_metric_plot.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HTGenomeAnalysisUnit/SCE-VCF/37366a05d0b59f89c37292dc5e0233b817de1e1d/example/simulation_metric_plot.png -------------------------------------------------------------------------------- /example/simulation_results.tsv: -------------------------------------------------------------------------------- 1 | #SAMPLE HQ_HOM HQ_HOM_RATE HQ_HET HQ_HET_RATE CHARR MEAN_REF_AB_HOM_ALT HETEROZYGOSITY_RATE INCONSISTENT_AB_HET_RATE 2 | original_sample 1101063 1.00000 1516921 0.96191 0.01144 0.00371 0.57942 0.00999 3 | cont_0.99_0.01 1092683 1.00000 1515890 0.96113 0.01669 0.00598 0.58112 0.01068 4 | cont_0.98_0.02 1079498 1.00000 1514989 0.95938 0.02134 0.00794 0.58393 0.01249 5 | cont_0.97_0.03 1062034 1.00000 1514340 0.95648 0.02543 0.00963 0.58778 0.01580 6 | cont_0.96_0.04 1040781 1.00000 1514274 0.95240 0.02899 0.01107 0.59266 0.02079 7 | cont_0.95_0.05 1027437 1.00000 1512849 0.94977 0.03044 0.01164 0.59554 0.02412 8 | cont_0.85_0.15 741203 1.00000 1578589 0.86162 0.04422 0.01578 0.68049 0.15782 9 | cont_0.9_0.1 874280 1.00000 1532181 0.90654 0.04179 0.01559 0.63669 0.08385 10 | cont_0.8_0.2 635342 1.00000 1652251 0.82522 0.04192 0.01431 0.72227 0.22597 11 | cont_0.7_0.3 505642 1.00000 1832859 0.78729 0.03092 0.00972 0.78378 0.29380 12 | cont_0.5_0.5 409987 1.00000 2103835 0.78209 0.01383 0.00371 0.83691 0.29484 13 | -------------------------------------------------------------------------------- /nim_compile.sh: -------------------------------------------------------------------------------- 1 | #Compile a static build with no dependencies on hts lib 2 | #See: https://github.com/brentp/hts-nim#static-builds 3 | #Adjust the third bind to the path containing your nimble packages dir 4 | 5 | pkg_name="sceVCF" 6 | 7 | singularity exec \ 8 | --bind $PWD \ 9 | --bind $PWD:/load/ \ 10 | --bind /nimble/packages/dir \ 11 | docker://brentp/musl-hts-nim:latest \ 12 | /usr/local/bin/nsb \ 13 | -s $PWD/src/${pkg_name}.nim \ 14 | --nimble-file $PWD/${pkg_name}.nimble -- -d:danger -d:release 15 | -------------------------------------------------------------------------------- /sceVCF.nimble: -------------------------------------------------------------------------------- 1 | # Package 2 | 3 | version = "0.1.2" 4 | author = "edoardo.giacopuzzi" 5 | description = "Fast calculation of metric useful to estimate sample contamination" 6 | license = "MIT" 7 | srcDir = "src" 8 | bin = @["bin/sceVCF"] 9 | skipDirs = @["test"] 10 | 11 | 12 | # Dependencies 13 | 14 | requires "nim >= 1.4.8", "hts >= 0.3.21", "argparse >= 3.0.0" 15 | -------------------------------------------------------------------------------- /src/sceVCF.nim: -------------------------------------------------------------------------------- 1 | # This is just an example to get you started. A typical binary package 2 | # uses this file as the main entry point of the application. 3 | import hts 4 | import times 5 | import strformat 6 | import strutils 7 | import sequtils 8 | import streams 9 | import tables 10 | import math 11 | from os import fileExists 12 | import scevcf/arg_parse 13 | import scevcf/utils 14 | 15 | const VERSION = "0.1.3" 16 | const TSV_HEADER = "#SAMPLE\tHOM_TOTAL\tHOM_COVERED\tHQ_HOM\tHQ_HOM_RATE\tHET_TOTAL\tHET_COVERED\tHQ_HET\tHQ_HET_RATE\tCHARR\tMEAN_REF_AB_HOM_ALT\tHETEROZYGOSITY_RATE\tINCONSISTENT_AB_HET_RATE" 17 | const AUTOSOMES = map(to_seq(1..22), proc(x: int): string = $x) 18 | 19 | type Contamination_data = object 20 | charr: float 21 | ref_ab: float 22 | het: tuple[n: int, covered: int, hq: int, bad: int] 23 | hom: tuple[n: int, covered: int, hq: int] 24 | 25 | iterator readvar(v: VCF, regions: seq[string]): Variant = 26 | if regions.len == 0: 27 | for variant in v: yield variant 28 | else: 29 | for r in regions: 30 | for variant in v.query(r): yield variant 31 | 32 | proc update_values(sdata: var Table[string, Contamination_data], genos: Genotypes, ads: seq[int32], refAF: float32, gqs: seq[int32], dps: seq[int32], samples: seq[string], het_ab_limit: (float,float), minGQ: int, dp_limit: seq[int]) = 33 | for i in 0..samples.high: 34 | let 35 | sid = samples[i] 36 | ref_ad = ads[i*2] 37 | alt_ad = ads[i*2+1] 38 | tot_ad = ref_ad + alt_ad 39 | 40 | case genos[i].alts: 41 | of 2: #compute charr for hom alt vars 42 | sdata[sid].hom.n += 1 43 | if dps[i] < dp_limit[0] or dps[i] > dp_limit[1]: continue 44 | sdata[sid].hom.covered += 1 45 | if gqs[i] < minGQ: continue 46 | let 47 | ref_af = (if refAF < 0: 0.0 else: refAF) 48 | ref_ab = ref_ad / tot_ad 49 | charr = ref_ab * (1/ref_af) 50 | if charr.classify != fcNan and charr.classify != fcInf: 51 | sdata[sid].charr += charr 52 | sdata[sid].hom.hq += 1 53 | if ref_ab.classify != fcNan and ref_ab.classify != fcInf: 54 | sdata[sid].ref_ab += ref_ab 55 | of 1: #check 56 | sdata[sid].het.n += 1 57 | if dps[i] < dp_limit[0] or dps[i] > dp_limit[1]: continue 58 | sdata[sid].het.covered += 1 59 | if gqs[i] >= minGQ: sdata[sid].het.hq += 1 60 | let het_ab = alt_ad / tot_ad 61 | if het_ab < het_ab_limit[0] or het_ab > het_ab_limit[1]: 62 | sdata[sid].het.bad += 1 63 | else: 64 | discard 65 | 66 | proc main* () = 67 | log("INFO", fmt"SCE-VCF v{VERSION}") 68 | 69 | #Parse command line arguments 70 | var opts = parseCmdLine() 71 | opts.logArgs() 72 | 73 | let 74 | regions = read_list(opts.region, "region") 75 | minGQ = parseInt(opts.min_GQ) 76 | dp_lims_opts = opts.dp_limit.split(",") 77 | dp_lims = @[parseInt(dp_lims_opts[0]), parseInt(dp_lims_opts[1])] 78 | refAF_lims_opts = opts.refaf_limit.split(",") 79 | refAF_lims = @[parseFloat(refAF_lims_opts[0]), parseFloat(refAF_lims_opts[1])] 80 | var samples = read_list(opts.samples, "samples") 81 | var het_ab_limit: (float, float) 82 | try: 83 | het_ab_limit = ( 84 | parseFloat(opts.het_ab_limit.split(",")[0]), 85 | parseFloat(opts.het_ab_limit.split(",")[1]) 86 | ) 87 | except ValueError: 88 | log("FATAL", fmt"Cannot parse float values from het_ab_limit '{opts.het_ab_limit}'") 89 | 90 | #Open output file and write header 91 | var write_to_file = false 92 | if opts.out != "": write_to_file = true 93 | 94 | var out_tsv:FileStream 95 | if write_to_file: 96 | out_tsv = newFileStream(opts.out, fmWrite) 97 | if isNil(out_tsv): 98 | log("FATAL", "Could not open output file " & opts.out) 99 | quit "", QuitFailure 100 | 101 | for f in opts.vcf: 102 | if not fileExists(f): 103 | log("FATAL", "Could not open input VCF file " & f) 104 | quit "", QuitFailure 105 | 106 | #Process input files 107 | log("INFO", "Variant processing started") 108 | var 109 | start_time = cpuTime() 110 | t0 = cpuTime() 111 | interval = 50000 112 | n = 0 113 | sample_data: Table[string, Contamination_data] 114 | n_multiallele = 0 115 | n_indels = 0 116 | n_large_af = 0 117 | n_no_aftag = 0 118 | n_nopass = 0 119 | n_noautosome = 0 120 | 121 | var 122 | ads: seq[int32] 123 | gts: seq[int32] 124 | afs: seq[float32] 125 | gqs: seq[int32] 126 | dps: seq[int32] 127 | 128 | for f in opts.vcf: 129 | 130 | log("INFO", fmt"Processing file {f}") 131 | var vcf:VCF 132 | discard open(vcf, f, samples=samples) 133 | 134 | for s in vcf.samples: 135 | var x: Contamination_data 136 | discard sample_data.hasKeyOrPut(s, x) 137 | 138 | var desc: string 139 | try: 140 | desc = vcf.header.get(opts.af_field, BCF_HEADER_TYPE.BCF_HL_INFO)["Description"] 141 | except: 142 | log("FATAL", fmt"Didn't find {opts.af_field} INFO in header in {vcf.fname}") 143 | 144 | try: 145 | desc = vcf.header.get(opts.ad_field, BCF_HEADER_TYPE.BCF_HL_FMT)["Description"] 146 | except: 147 | log("FATAL", fmt"Didn't find {opts.ad_field} FORMAT in header in {vcf.fname}") 148 | 149 | for v in vcf.readvar(regions): 150 | n = n + 1 151 | var (dolog, log_msg) = progress_counter(n, interval, t0) 152 | if dolog: log("INFO", log_msg) 153 | 154 | #consider only PASS vars from autosomes 155 | if v.FILTER != "PASS" and v.FILTER != ".": 156 | n_nopass += 1 157 | continue 158 | var chrom = $v.CHROM 159 | if chrom.replace("chr","") notin AUTOSOMES: 160 | n_noautosome += 1 161 | continue 162 | 163 | #consider only biallelic sites 164 | if len(v.ALT) > 1: 165 | n_multiallele += 1 166 | continue 167 | 168 | #skip indels 169 | if v.REF.len > 1 or v.ALT[0].len > 1: 170 | n_indels += 1 171 | continue 172 | 173 | doAssert v.format.get(opts.ad_field, ads) == Status.OK 174 | doAssert v.format.get("GQ", gqs) == Status.OK 175 | doAssert v.format.get("DP", dps) == Status.OK 176 | let genos = v.format.genotypes(gts) 177 | 178 | #skip variant if the selected AF field is not found 179 | if v.info.get(opts.af_field, afs) != Status.OK: 180 | n_no_aftag += 1 181 | continue 182 | 183 | #skip var where ref AF is too low or high 184 | #because this will results in outlier CHARR values 185 | var refAF = 1-afs[0] 186 | if (opts.is_refAF): 187 | refAF = afs[0] 188 | 189 | if refAF < refAF_lims[0] or refAF > refAF_lims[1]: 190 | n_large_af += 1 191 | continue 192 | 193 | sample_data.update_values(genos, ads, refAF, gqs, dps, vcf.samples, het_ab_limit, minGQ, dp_lims) 194 | 195 | close(vcf) 196 | 197 | let tot_skipped = n_multiallele + n_large_af + n_no_aftag + n_indels + n_nopass + n_noautosome 198 | log("INFO", fmt"{n} variants processed, {tot_skipped} vars ignored") 199 | log("INFO", fmt"{n_nopass} no PASS variants, {n_noautosome} not in autosomes, {n_multiallele} multiallelic, {n_indels} indels, {n_large_af} outside ref AF limits, {n_no_aftag} missing AF tag") 200 | 201 | if tot_skipped == n: 202 | log("FATAL", fmt"No variants remaining for analysis") 203 | quit(QuitFailure) 204 | 205 | # Write header to output 206 | if write_to_file: 207 | out_tsv.writeLine(fmt"## {n - tot_skipped} variants considered for analysis, {tot_skipped}/{n} vars ignored") 208 | out_tsv.writeLine(TSV_HEADER) 209 | else: 210 | stdout.writeLine(fmt"## {n - tot_skipped} variants considered for analysis, {tot_skipped}/{n} vars ignored") 211 | stdout.writeLine(TSV_HEADER) 212 | 213 | log("INFO", "Computing contamination values") 214 | var 215 | written_samples = 0 216 | warn_no_hq_hom = 0 217 | warn_no_hq_het = 0 218 | for sample_id, values in sample_data.pairs: 219 | written_samples += 1 220 | let 221 | charr_value = (values.charr / values.hom.hq.float).formatFloat(ffDecimal, 5) 222 | het_rate = (values.het.hq / (values.hom.hq + values.het.hq)).formatFloat(ffDecimal, 5) 223 | bad_het_rate = (values.het.bad / values.het.covered).formatFloat(ffDecimal, 5) 224 | mean_ref_ab = (values.ref_ab / values.hom.hq.float).formatFloat(ffDecimal, 5) 225 | hom_hq_rate = (values.hom.hq / values.hom.covered).formatFloat(ffDecimal, 5) 226 | het_hq_rate = (values.het.hq / values.het.covered).formatFloat(ffDecimal, 5) 227 | 228 | let result_line = &"{sample_id}\t{values.hom.n}\t{values.hom.covered}\t{values.hom.hq}\t{hom_hq_rate}\t{values.het.n}\t{values.het.covered}\t{values.het.hq}\t{het_hq_rate}\t{charr_value}\t{mean_ref_ab}\t{het_rate}\t{bad_het_rate}" 229 | if values.hom.hq == 0: warn_no_hq_hom += 1 230 | if values.het.hq == 0: warn_no_hq_het += 1 231 | 232 | if write_to_file: 233 | out_tsv.writeLine(result_line) 234 | else: 235 | stdout.writeLine(result_line) 236 | 237 | if write_to_file: close(out_tsv) 238 | log("INFO", fmt"Written contamination values for {written_samples} sample(s) in {elapsed_time(start_time)}") 239 | 240 | if warn_no_hq_hom > 0: 241 | log("WARN", fmt"{warn_no_hq_hom} sample(s) have no HQ homozygous ALT sites, CHARR value will not be computed for those. These have HQ_HOM == 0") 242 | 243 | if warn_no_hq_het > 0: 244 | log("WARN", fmt"{warn_no_hq_het} sample(s) have no HQ heterozygous sites, het rate computation will be unreliable for those. These have HQ_HET == 0") 245 | 246 | when isMainModule: 247 | main() -------------------------------------------------------------------------------- /src/scevcf/arg_parse.nim: -------------------------------------------------------------------------------- 1 | import argparse 2 | import strformat 3 | from ./utils import log 4 | 5 | var p = newParser("sceVCF"): 6 | help("Fast computation of contamination metrics from VCF file(s)") 7 | arg("vcf", nargs = -1, help="input VCF/BCF file(s). Glob pattern allowed") 8 | option("-o", "--out", help="Output file (TSV). If not provided output to stdout") 9 | option("-f", "--ad_field", help="FORMAT field containing the AD values", default = some("AD")) 10 | option("-a", "--af_field", help="INFO field containing the allele frequency", default = some("AF")) 11 | flag("-i", "--is_refAF", help="AF in the af_field is the REF AF") 12 | option("-t", "--refaf_limit", help="Limits of REF AF. Comma-separated lower and upper limit", default = some("0.1,0.9")) 13 | option("-l", "--het_ab_limit", help="Comma separated min and max allele balance accepted for het calls", default = some("0.25,0.75")) 14 | option("-q", "--min_GQ", help="Min GQ for hom var to be included in charr computation", default = some("20")) 15 | option("-d", "--dp_limit", help="Limits of genotype DP. Comma-separated lower and upper limit", default = some("20,100")) 16 | option("-s", "--samples", help="Restrict analysis to the given samples. Comma separated list or file wiht one sample per line") 17 | option("-r", "--region", help="Specify genomic region for processing. Format is chr[:start-end]. Comma-separated list of regions or file with 1 region per line.") 18 | 19 | proc parseCmdLine*(): ref = 20 | try: 21 | result = p.parse() 22 | except ShortCircuit as e: 23 | if e.flag == "argparse_help": 24 | echo p.help 25 | quit QuitSuccess 26 | except UsageError: 27 | stderr.writeLine getCurrentExceptionMsg() 28 | echo "Use --help for usage information" 29 | quit QuitSuccess 30 | 31 | proc logArgs*(opts: ref) {.discardable.} = 32 | log("ARG", fmt"Input VCF: {opts.vcf}") 33 | let out_stream = (if opts.out != "": opts.out else: "stdout") 34 | log("ARG", fmt"Output: {out_stream}") 35 | log("ARG", fmt"AD field: {opts.ad_field}") 36 | log("ARG", fmt"AF field: {opts.af_field}") 37 | log("ARG", fmt"Is refAF: {opts.is_refAF}") 38 | log("ARG", fmt"REF AF limits: {opts.refaf_limit}") 39 | log("ARG", fmt"Het AB limit: {opts.het_ab_limit}") 40 | log("ARG", fmt"Min GQ: {opts.min_GQ}") 41 | log("ARG", fmt"DP limit: {opts.dp_limit}") 42 | if opts.samples != "": 43 | log("ARG", fmt"Samples {opts.samples}") 44 | -------------------------------------------------------------------------------- /src/scevcf/utils.nim: -------------------------------------------------------------------------------- 1 | import times 2 | import strutils 3 | import strformat 4 | import system 5 | import math 6 | import os 7 | 8 | proc log* (level: string = "INFO", msg: string) {.discardable.} = 9 | let t = now() 10 | let f = initTimeFormat("HH:mm:ss-fff") 11 | var time_string = format(t, f) 12 | let log_msg = fmt"[{time_string}] - {level}: {msg}" 13 | stderr.write(log_msg & "\n") 14 | 15 | proc elapsed_time* (start_time: float): string = 16 | let interval = cpuTime() - start_time 17 | let s = floor(interval) 18 | let m = floor(((interval - s) * 1000)) 19 | let time_interval = initDuration(seconds = int(s), milliseconds = int(m)) 20 | result = $time_interval 21 | 22 | proc progress_counter* (n:int, interval: var int, t0: var float): (bool, string) {.discardable.} = 23 | result = (false, "") 24 | 25 | if floorMod(n, interval) == 0: 26 | result = (true, fmt"{n} variants processed. Last batch: {interval} in {elapsed_time(t0)}") 27 | t0 = cpuTime() 28 | 29 | case n 30 | #of 50000: interval = 25000 31 | of 150000: interval = 50000 32 | of 500000: interval = 100000 33 | of 1000000: interval = 500000 34 | else: discard 35 | 36 | proc read_list* (list: string, name: string = ""): seq[string] = 37 | if list == "": 38 | result = @[] 39 | else: 40 | if os.fileExists(list): 41 | log("INFO", fmt"Reading {name} list from file: {list}") 42 | for line in lines(list): 43 | result.add(line) 44 | else: 45 | log("INFO", fmt"Reading {name} list from comma-separated string") 46 | result = list.split(",") 47 | 48 | log("INFO", fmt"Imported {result.len} {name}s") -------------------------------------------------------------------------------- /test/input_test.vcf.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HTGenomeAnalysisUnit/SCE-VCF/37366a05d0b59f89c37292dc5e0233b817de1e1d/test/input_test.vcf.gz -------------------------------------------------------------------------------- /test/input_test.vcf.gz.csi: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HTGenomeAnalysisUnit/SCE-VCF/37366a05d0b59f89c37292dc5e0233b817de1e1d/test/input_test.vcf.gz.csi -------------------------------------------------------------------------------- /test/samples.list: -------------------------------------------------------------------------------- 1 | HG00096 2 | HG00097 3 | HG00099 4 | --------------------------------------------------------------------------------