├── .gitignore ├── LICENSE ├── Pipfile ├── Pipfile.lock ├── README.md ├── docs ├── 16S.md ├── 16S_mothur.md ├── annotation.md ├── assembly.md ├── command_line.md ├── data │ ├── 16S.Rmd │ ├── 16S_metadata.txt │ ├── DHN_Pig_60K.fastq.gz │ ├── fastqc │ │ ├── SRR957824_500K_R1_fastqc.html │ │ ├── SRR957824_500K_R2_fastqc.html │ │ ├── SRR957824_trimmed_R1_fastqc.html │ │ ├── SRR957824_trimmed_R2_fastqc.html │ │ ├── multiqc_report.html │ │ └── report.html │ ├── pangenome.tar.gz │ └── samples.txt ├── file_formats.md ├── img │ └── plasmid.png ├── index.md ├── mapping.md ├── meta_assembly.md ├── meta_assembly_2.md ├── metavir.md ├── nanopore.md ├── pan_genome.md ├── qc.md ├── rna.md └── wms.md ├── images ├── blast1.png ├── tablet1.png ├── tablet2.png └── tablet3.png └── mkdocs.yml /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HadrienG/tutorials/HEAD/.gitignore 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