├── .EnergyTransport_freeHamiltonian_Thermal.py.swp ├── .ions.py.swp ├── .ipynb_checkpoints └── Untitled0-checkpoint.ipynb ├── Data_Storage ├── 10ions-PhononPopulationAtEndIons-200KHzAxial-HarmonicPotential.png ├── 5ions-InitState(1, 0, 0, 0, 0)_150.0KHzAxial.jpg ├── 5ions-InitState(1, 0, 0, 0, 0)_150.0KHzAxial_Rabifreq0.0_Detuning0.0.jpg ├── 5ions-InitState(1, 0, 0, 0, 0)_150.0KHzAxial_Rabifreq0.0_Detuning0.0.xcf ├── 5ions-InitState(1, 0, 0, 0, 0)_150.0KHzAxial_Rabifreq200.0_Detuning0.0.jpg ├── 5ions-InitState(1, 0, 0, 0, 0)_150.0KHzAxial_Rabifreq200.0_Detuning100.0.jpg ├── 5ions-InitState(1, 0, 0, 0, 0)_150.0KHzAxial_Rabifreq3141592.65359_Detuning100.0.jpg ├── 5ions-InitState(1, 0, 0, 0, 0)_150.0KHzAxial_Rabifreq3141592.65359_Detuning20.0.jpg ├── 5ions-InitState(1, 0, 0, 0, 0)_150.0KHzAxial_Rabifreq500.0_Detuning100.0.jpg ├── 5ions-InitState(1, 0, 0, 0, 0)_150.0KHzAxial_Rabifreq500000.0_Detuning100.0.jpg ├── 5ions-InitState(1, 0, 0, 0, 0)_150.0KHzAxial_Rabifreq500000.0_Detuning300.0.jpg ├── 5ions-InitState(2, 0, 0, 0, 0)_150.0KHzAxial.jpg ├── 5ions-InitState(2, 0, 0, 0, 0)_150.0KHzAxial_Rabifreq200.0_Detuning100.0.jpg ├── 5ions-InitState(2, 0, 0, 0, 1)_150.0KHzAxial.jpg ├── 5ions-InitState(2, 0, 0, 0, 3)_150.0KHzAxial_Rabifreq3141592.65359.jpg ├── 5ions-InitState(2, 0, 0, 1, 1)_150.0KHzAxial.jpg ├── 5ions-InitState(2, 0, 0, 1, 2)_150.0KHzAxial.jpg ├── 5ions-InitState(2, 0, 1, 0, 1)_150.0KHzAxial.jpg ├── 5ions-laser_on_ion3_InitState(1, 0, 0, 0, 0)_150.0KHzAxial_Rabifreq0.0_Detuning0.0.jpg ├── 5ions-laser_on_ion5_InitState(1, 0, 0, 0, 0)_150.0KHzAxial_Rabifreq0.0_Detuning0.0.jpg ├── CouplingEndIons-10ions-PhononPopulationAtEndIons-200KHzAxial-WithX2Z2Term-10KHzPerMicronRadialGradientat100Microns.png ├── CouplingEndIons-10ions-PhononPopulationAtEndIons-200KHzAxial-WithX2Z2Term-14.5KHzPerMicronRadialGradientat100Microns.jpg ├── CouplingEndIons-10ions-PhononPopulationAtEndIons-200KHzAxial-WithX2Z2Term-15KHzPerMicronRadialGradientat100Microns.png ├── CouplingEndIons-10ions_InitiState(1, 0, 0, 0, 0, 0, 0, 0, 0, 0)-PhononPopulationAtEndIons-170.00KHzAxial-WithX2Z2Term_20KHzPerMicronRadialGradientat100Microns.jpg ├── CouplingEndIons-10ions_InitiState{(1, 0, 0, 0, 0, 0, 0, 0, 0, 0)}-PhononPopulationAtEndIons-200KHzAxial-WithX2Z2Term_20KHzPerMicronRadialGradientat100Microns.jpg ├── CouplingEndIons-15ions-PhononPopulationAtEndIons-170KHzAxial-WithX2Z2Term-7KHzPerMicronRadialGradientat100Microns.jpg ├── CouplingEndIons-15ions-PhononPopulationAtEndIons-200KHzAxial-WithX2Z2Term-10KHzPerMicronRadialGradientat100Microns.jpg ├── CouplingEndIons-15ions-PhononPopulationAtEndIons-200KHzAxial-WithX2Z2Term-14.5KHzPerMicronRadialGradientat100Microns.jpg ├── CouplingEndIons-15ions-PhononPopulationAtEndIons-200KHzAxial-WithX2Z2Term-7KHzPerMicronRadialGradientat100Microns.jpg ├── disengagingion.jpg ├── harmonic_vs_equal_distances_5ions_Axial_freq200.0KHz.jpg ├── harmonic_vs_equal_distances_9ions_Axial_freq200.0KHz.jpg ├── harmonic_vs_equal_distances_pulse_on_ion1_13ions_Axial_freq150.0KHz.jpg ├── harmonic_vs_equal_distances_pulse_on_ionmiddle_13ions_Axial_freq150.0KHz.jpg ├── harmonic_vs_equal_distances_pulse_on_ionmiddle_13ions_Axial_freq190.0KHz.jpg └── ouplingEndIons-10ions_InitiState(1, 0, 0, 0, 1, 0, 0, 0, 0, 0)-PhononPopulationAtEndIons-170HzAxial-WithX2Z2Term_20KHzPerMicronRadialGradientat100Microns.jpg ├── EnergyTransport_freeHamiltonian_Thermal.py ├── Independent_Simulations ├── .RData ├── .Rhistory ├── .ipynb_checkpoints │ ├── Aim-for-Equal-Distances-checkpoint.ipynb │ ├── Chain-Scale-Adding-Dynamics-of-Electronic-States-checkpoint.ipynb │ ├── Chain-Scale-Continuous-Laser-Detuning-Intensity-Analysis-checkpoint.ipynb │ ├── Chain-Scale-Coupling-Analysis-checkpoint.ipynb │ ├── Chain-Scale-Equal-Distances-checkpoint.ipynb │ ├── Chain-Scale-checkpoint.ipynb │ ├── Chain-Scale-thermal-states-checkpoint.ipynb │ ├── Finding-ion-equilibrium-positions-checkpoint.ipynb │ ├── Get-Couplings-checkpoint.ipynb │ ├── Harmonic-vs-Equal-Distances-checkpoint.ipynb │ ├── Img-Analysis-Play-checkpoint.ipynb │ ├── LatticePaper-DataAnalysis-checkpoint.ipynb │ ├── LatticePaper-checkpoint.ipynb │ ├── Lattice_thermal-checkpoint.ipynb │ ├── Radial-corrections-norma-withx2z2-mode-analysis-checkpoint.ipynb │ ├── Untitled-checkpoint.ipynb │ ├── Untitled0-checkpoint.ipynb │ ├── Untitled1-checkpoint.ipynb │ ├── Untitled2-checkpoint.ipynb │ ├── Untitled3-checkpoint.ipynb │ └── ipython2-Chain-Scale-Classical-Picture-Analysis-IonRange-with-EqualDistancesvsHarmonic-checkpoint.ipynb ├── Aim-for-Equal-Distances.ipynb ├── Chain-Scale-Adding-Dynamics-of-Electronic-States.ipynb ├── Chain-Scale-Continuous-Laser-Detuning-Intensity-Analysis.ipynb ├── Chain-Scale-Coupling-Analysis.ipynb ├── Chain-Scale-Equal-Distances.ipynb ├── Chain-Scale-thermal-states.ipynb ├── Chain-Scale.ipynb ├── Get-Couplings.ipynb ├── Harmonic-vs-Equal-Distances.ipynb ├── Img-Analysis-Play.ipynb ├── LatticePaper-DataAnalysis.ipynb ├── LatticePaper.ipynb ├── Lattice_thermal.ipynb ├── Radial-corrections-norma-withx2z2-mode-analysis.ipynb ├── Radial-corrections-norma-withx2z2-mode-analysis.ipynb.BACKUP.28947.ipynb ├── Radial-corrections-norma-withx2z2-mode-analysis.ipynb.BASE.28947.ipynb ├── Radial-corrections-norma-withx2z2-mode-analysis.ipynb.LOCAL.28947.ipynb ├── Radial-corrections-norma-withx2z2-mode-analysis.ipynb.REMOTE.28947.ipynb ├── graphs │ ├── 14ions-150KHzAxial.jpg │ ├── 20ions-150KHzAxial.jpg │ ├── 20ions-EqualDistances-ChainLengthSameAsWith150KHzAxial.jpg │ ├── 20ions-EqualDistances-Longtime-ChainLengthSameAsHarmonic150KHzAxial.jpg │ ├── 20ions-EqualDistancesVsHarmonic-ChainLengthSameAsHarmonic150KHzAxial.jpg │ ├── 20ions-EqualDistancesVsHarmonic-ChainLengthSameAsWith150KHzAxial.jpg │ ├── 41ionsVisibility.jpg │ ├── CouplingEndIons-10ions_InitiState(1, 0, 0, 0, 0, 0, 0, 0, 0, 0)-PhononPopulationAtEndIons-200KHzAxial-WithX2Z2Term_20KHzPerMicronRadialGradientat100Microns.jpg │ ├── CouplingEndIons-10ions_InitiState(1, 0, 0, 0, 1, 0, 0, 0, 0, 0)-PhononPopulationAtEndIons-200KHzAxial-WithX2Z2Term_14.5KHzPerMicronRadialGradientat100Microns.jpg │ ├── CouplingEndIons-10ions_InitiState(1, 0, 0, 0, 1, 0, 0, 0, 0, 0)-PhononPopulationAtEndIons-200KHzAxial-WithX2Z2Term_20KHzPerMicronRadialGradientat100Microns.jpg │ ├── CouplingEndIons-10ions_InitiState(1, 1, 0, 0, 0, 0, 0, 0, 1, 0)-PhononPopulationAtEndIons-170KHzAxial-WithX2Z2Term-7KHzPerMicronRadialGradientat100Microns.jpg │ ├── CouplingEndIons-10ions_InitiState{(1, 0, 0, 0, 0, 0, 0, 0, 0, 0)}-PhononPopulationAtEndIons-200KHzAxial-WithX2Z2Term_20KHzPerMicronRadialGradientat100Microns.jpg │ ├── Rplot.png │ ├── harmonic-170KHzAxial.jpg │ └── harmonic-200KHzAxial.jpg ├── ipython2-Chain-Scale-Classical-Picture-Analysis-IonRange-with-EqualDistancesvsHarmonic.ipynb ├── qdynamics_with_anharmonicities │ ├── data │ │ ├── 10ions_all_ions_radial_freq_modification_with_gradient_at_100microns_of_-10.00KHzPerMicrons_example6_EqualDistancesFalse_Radial2.00MHz_Axial100.00KHz_NeighborTunneling5.42KHz.jpg │ │ ├── 10ions_all_ions_radial_freq_modification_with_gradient_at_100microns_of_-10.00KHzPerMicrons_example6_EqualDistancesFalse_Radial2.00MHz_Axial100.00KHz_NeighborTunneling5.42KHz_data.qu │ │ ├── 10ions_all_ions_radial_freq_modification_with_gradient_at_100microns_of_0.00KHzPerMicrons_example6_EqualDistancesFalse_Radial2.00MHz_Axial100.00KHz_NeighborTunneling5.42KHz.jpg │ │ ├── 10ions_all_ions_radial_freq_modification_with_gradient_at_100microns_of_0.00KHzPerMicrons_example6_EqualDistancesFalse_Radial2.00MHz_Axial100.00KHz_NeighborTunneling5.42KHz_data.qu │ │ ├── 10ions_all_ions_radial_freq_modification_with_gradient_at_100microns_of_10.00KHzPerMicrons_example6_EqualDistancesFalse_Radial2.00MHz_Axial100.00KHz_NeighborTunneling5.42KHz.jpg │ │ ├── 10ions_all_ions_radial_freq_modification_with_gradient_at_100microns_of_10.00KHzPerMicrons_example6_EqualDistancesFalse_Radial2.00MHz_Axial100.00KHz_NeighborTunneling5.42KHz_data.qu │ │ ├── 10ions_all_ions_radial_freq_modification_with_gradient_at_100microns_of_2.00KHzPerMicrons_example6_EqualDistancesFalse_Radial2.00MHz_Axial100.00KHz_NeighborTunneling5.42KHz.jpg │ │ ├── 10ions_all_ions_radial_freq_modification_with_gradient_at_100microns_of_2.00KHzPerMicrons_example6_EqualDistancesFalse_Radial2.00MHz_Axial100.00KHz_NeighborTunneling5.42KHz_data.qu │ │ ├── 10ions_all_ions_radial_freq_modification_with_gradient_at_100microns_of_4.00KHzPerMicrons_example6_EqualDistancesFalse_Radial2.00MHz_Axial100.00KHz_NeighborTunneling5.42KHz.jpg │ │ ├── 10ions_all_ions_radial_freq_modification_with_gradient_at_100microns_of_4.00KHzPerMicrons_example6_EqualDistancesFalse_Radial2.00MHz_Axial100.00KHz_NeighborTunneling5.42KHz_data.qu │ │ ├── 10ions_all_ions_radial_freq_modification_with_gradient_at_100microns_of_6.00KHzPerMicrons_example6_EqualDistancesFalse_Radial2.00MHz_Axial100.00KHz_NeighborTunneling5.42KHz.jpg │ │ ├── 10ions_all_ions_radial_freq_modification_with_gradient_at_100microns_of_6.00KHzPerMicrons_example6_EqualDistancesFalse_Radial2.00MHz_Axial100.00KHz_NeighborTunneling5.42KHz_data.qu │ │ ├── 10ions_all_ions_radial_freq_modification_with_gradient_at_100microns_of_8.00KHzPerMicrons_example6_EqualDistancesFalse_Radial2.00MHz_Axial100.00KHz_NeighborTunneling5.42KHz.jpg │ │ ├── 10ions_all_ions_radial_freq_modification_with_gradient_at_100microns_of_8.00KHzPerMicrons_example6_EqualDistancesFalse_Radial2.00MHz_Axial100.00KHz_NeighborTunneling5.42KHz_data.qu │ │ ├── 5ions_ion1_example4_EqualDistancesFalse_Radial2.25MHz_Axial144.04KHz_NeighborTunneling5.86KHz.jpg │ │ ├── 5ions_ion1_example4_EqualDistancesFalse_Radial2.25MHz_Axial144.04KHz_NeighborTunneling5.86KHz_data.qu │ │ ├── 5ions_ion1_example4_EqualDistancesTrue_Radial2.25MHz_Axial144.04KHz_NeighborTunneling10.00KHz.jpg │ │ ├── 5ions_ion1_example4_EqualDistancesTrue_Radial2.25MHz_Axial144.04KHz_NeighborTunneling10.00KHz_data.qu │ │ ├── radial_freq_modification-100.00KHz_5ions_ion1_example5_EqualDistancesFalse_Radial2.25MHz_Axial144.04KHz_NeighborTunneling5.86KHz.jpg │ │ ├── radial_freq_modification-100.00KHz_5ions_ion1_example5_EqualDistancesFalse_Radial2.25MHz_Axial144.04KHz_NeighborTunneling5.86KHz_data.qu │ │ ├── radial_freq_modification-100.00KHz_5ions_ion1_example5_EqualDistancesTrue_Radial2.25MHz_Axial144.04KHz_NeighborTunneling10.00KHz.jpg │ │ ├── radial_freq_modification-100.00KHz_5ions_ion1_example5_EqualDistancesTrue_Radial2.25MHz_Axial144.04KHz_NeighborTunneling10.00KHz_data.qu │ │ ├── radial_freq_modification100.00KHz_5ions_ion1_example5_EqualDistancesFalse_Radial2.25MHz_Axial144.04KHz_NeighborTunneling5.86KHz.jpg │ │ ├── radial_freq_modification100.00KHz_5ions_ion1_example5_EqualDistancesFalse_Radial2.25MHz_Axial144.04KHz_NeighborTunneling5.86KHz_data.qu │ │ ├── radial_freq_modification100.00KHz_5ions_ion1_example5_EqualDistancesTrue_Radial2.25MHz_Axial144.04KHz_NeighborTunneling10.00KHz.jpg │ │ └── radial_freq_modification100.00KHz_5ions_ion1_example5_EqualDistancesTrue_Radial2.25MHz_Axial144.04KHz_NeighborTunneling10.00KHz_data.qu │ ├── equilibrium_positions.py │ ├── equilibrium_positions.pyc │ ├── qdynamics_with_anharmonicities.py │ ├── simulation_parameters.py │ └── simulation_parameters.pyc └── tuning-radial-frequencies.ipynb ├── LICENSE ├── Optimization ├── Results │ ├── global_optimization_results_2modes_isolation.txt │ ├── global_optimization_results_2modes_isolation_corrected_spectrum.txt │ └── global_optimization_results_wrong_spectra.txt ├── global_optimization_results.py ├── global_optimization_results_2modes_isolation.txt └── optimize.py ├── Tests ├── .ipynb_checkpoints │ ├── .ipynb_checkpoints │ │ ├── Testing_equilibrium_positions_for_arbitrary_potential-checkpoint-checkpoint.ipynb │ │ └── Testing_spectrum_for_arbitrary_potential-checkpoint-checkpoint.ipynb │ ├── Test10SP-checkpoint.ipynb │ ├── TestingSpinTimeEvolution-checkpoint.ipynb │ ├── Testing_Simulated_Annealing-checkpoint.ipynb │ ├── Testing_Simulated_Annealing_Symmetric_Voltages-checkpoint.ipynb │ ├── Testing_for_arbitrary_potential_electrode_voltages_and_positions-checkpoint.ipynb │ ├── Untitled0-checkpoint.ipynb │ ├── Untitled1-checkpoint.ipynb │ ├── Untitled2-checkpoint.ipynb │ └── Untitled3-checkpoint.ipynb ├── Test10SP.ipynb ├── TestingSpinTimeEvolution.ipynb ├── Testing_Simulated_Annealing.ipynb ├── Testing_Simulated_Annealing_Symmetric_Voltages.ipynb ├── Testing_for_arbitrary_potential_electrode_voltages_and_positions.ipynb ├── Tests.ipynb ├── Untitled0.ipynb ├── Untitled1.ipynb ├── Untitled2.ipynb ├── Untitled3.ipynb └── testing_trapping_for_arbitrary_electrode_voltages.py ├── __init__.py ├── __pycache__ ├── equilibrium_positions.cpython-34.pyc ├── error_handling.cpython-34.pyc ├── ion_trap.cpython-34.pyc ├── ions.cpython-34.pyc ├── laser.cpython-34.pyc ├── operator_zoo.cpython-34.pyc ├── quantum_dynamics.cpython-34.pyc └── simulation_parameters.cpython-34.pyc ├── aramsey_experiment.py ├── data_plotter.py ├── equilibrium_positions.py ├── error_handling.py ├── experiment.py ├── ion_trap.py ├── ions.py ├── ions_copy.py ├── laser.py ├── observables.py ├── operator_zoo.py ├── quantum_dynamics.py ├── scrap.py ├── setup.py ├── simulation_parameters.py └── spectral_optimization.py /.EnergyTransport_freeHamiltonian_Thermal.py.swp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HaeffnerLab/ion-trap-qsim/HEAD/.EnergyTransport_freeHamiltonian_Thermal.py.swp -------------------------------------------------------------------------------- /.ions.py.swp: 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