├── BasicOpticalWavePropagation ├── Math │ ├── coortrans.m │ └── pupilInterp.m ├── PupilFunctionLib │ ├── aberration │ │ ├── zernike function │ │ │ ├── Noll2RA.m │ │ │ └── zernfun.m │ │ └── zernikeDecomposition.m │ ├── amplitude │ │ ├── GaussAmp.m │ │ └── LaguerreGaussAmp.m │ ├── circularpupil.m │ ├── genCircularMask.m │ ├── phase │ │ ├── focusShiftPhasePlate.m │ │ └── vortexPhasePlate.m │ ├── polarization │ │ ├── gen │ │ │ ├── CircularPolarization.m │ │ │ ├── cylindVecPolarization.m │ │ │ └── randomPolarization.m │ │ └── representation │ │ │ └── plrBasisTransform.m │ └── pupilshow.m └── singleobjectivepsf_noT_MM.m ├── Phase Retrieval ├── easy diffraction calculator │ ├── simple_PR_MM.m │ └── simple_singleobjectivepsf_MM.m ├── pr │ ├── PR_MM.m │ └── singleobjectivepr.m ├── utils │ ├── add_noise.m │ ├── fftconv3.m │ ├── psfDenoise.m │ ├── psf_cent_size.m │ ├── pupilregen.m │ ├── pupilreini.m │ └── rand_phase_gen_inv_grad.m ├── vec nbeam │ ├── SysInit.m │ ├── vecPrPar_nbeam.m │ └── vec_phasediversity_nbeam.m └── vec │ ├── phs_plr_correction.m │ └── pupilfuntion_decode.m ├── README.md ├── SingleObjectivePSF.m ├── Tools ├── Fig_principles.png ├── clamp.m └── mathematics │ ├── angle2pi.m │ ├── intgrad2.m │ ├── metrics │ ├── complex_correction.m │ └── rmse.m │ ├── pagemtimes.m │ └── randAB.m └── focus_tomography.m /BasicOpticalWavePropagation/Math/coortrans.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Hao-Laboratory/Tightly-focused-field-tomography/HEAD/BasicOpticalWavePropagation/Math/coortrans.m -------------------------------------------------------------------------------- /BasicOpticalWavePropagation/Math/pupilInterp.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Hao-Laboratory/Tightly-focused-field-tomography/HEAD/BasicOpticalWavePropagation/Math/pupilInterp.m 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