├── .gitignore ├── CNN-meme-motifs.py ├── CNN-motifs.py ├── Compare-10folds.py ├── Joint-MRT.py ├── Joint-adaptive-sampling.py ├── LICENSE ├── Model ├── Joint_MRT.py ├── Joint_ada_sampling_model.py ├── __init__.py └── __pycache__ │ ├── GAT.cpython-36.pyc │ ├── RGCN.cpython-36.pyc │ └── __init__.cpython-36.pyc ├── README.md ├── Visualize_dataleak.py ├── lib ├── AMSGrad.py ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-36.pyc │ ├── clr.cpython-36.pyc │ ├── dataloader.cpython-36.pyc │ ├── gat_utils.cpython-36.pyc │ ├── general_utils.cpython-36.pyc │ ├── logger.cpython-36.pyc │ ├── plot.cpython-36.pyc │ ├── rgcn_utils.cpython-36.pyc │ └── rna_utils.cpython-36.pyc ├── clr.py ├── dataloader.py ├── general_utils.py ├── graphprot_dataloader.py ├── logger.py ├── ops │ ├── Conv1D.py │ ├── LSTM.py │ ├── Linear.py │ ├── Utils.py │ ├── __init__.py │ └── __pycache__ │ │ ├── BatchNorm.cpython-36.pyc │ │ ├── LSTM.cpython-36.pyc │ │ ├── Linear.cpython-36.pyc │ │ └── __init__.cpython-36.pyc ├── plot.py ├── resutils.py ├── rgcn_utils.py ├── rna_utils.py └── tf_ghm_loss.py └── small-GNN-motifs.py /.gitignore: -------------------------------------------------------------------------------- 1 | /Cached/ 2 | /Model/Legacy/ 3 | -------------------------------------------------------------------------------- /CNN-meme-motifs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HarveyYan/RNAonGraph/HEAD/CNN-meme-motifs.py -------------------------------------------------------------------------------- /CNN-motifs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HarveyYan/RNAonGraph/HEAD/CNN-motifs.py -------------------------------------------------------------------------------- /Compare-10folds.py: -------------------------------------------------------------------------------- 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