├── FPL-plus.png ├── PyMIC ├── .gitignore ├── LICENSE ├── README.md ├── __init__.py ├── docs │ ├── .debug.yml │ ├── Documentation │ │ └── README.md │ ├── Gemfile │ ├── Makefile │ ├── README.md │ ├── _config.yml │ ├── index.md │ ├── make.bat │ └── source │ │ ├── api.rst │ │ ├── conf.py │ │ ├── index.rst │ │ ├── installation.rst │ │ ├── modules.rst │ │ ├── pymic.io.rst │ │ ├── pymic.layer.rst │ │ ├── pymic.loss.cls.rst │ │ ├── pymic.loss.rst │ │ ├── pymic.loss.seg.rst │ │ ├── pymic.net.cls.rst │ │ ├── pymic.net.net2d.rst │ │ ├── pymic.net.net3d.rst │ │ ├── pymic.net.rst │ │ ├── pymic.net_run.rst │ │ ├── pymic.net_run_nll.rst │ │ ├── pymic.net_run_ssl.rst │ │ ├── pymic.net_run_wsl.rst │ │ ├── pymic.rst │ │ ├── pymic.transform.rst │ │ ├── pymic.util.rst │ │ ├── usage.fsl.rst │ │ ├── usage.nll.rst │ │ ├── usage.quickstart.rst │ │ ├── usage.rst │ │ ├── usage.ssl.rst │ │ └── usage.wsl.rst ├── pymic │ ├── __init__.py │ ├── io │ │ ├── __init__.py │ │ ├── h5_dataset.py │ │ ├── image_read_write.py │ │ └── nifty_dataset.py │ ├── layer │ │ ├── __init__.py │ │ ├── activation.py │ │ ├── convolution.py │ │ ├── deconvolution.py │ │ └── space2channel.py │ ├── loss │ │ ├── __init__.py │ │ ├── cls │ │ │ ├── __init__.py │ │ │ ├── basic.py │ │ │ └── util.py │ │ ├── loss_dict_cls.py │ │ ├── loss_dict_seg.py │ │ └── seg │ │ │ ├── __init__.py │ │ │ ├── abstract.py │ │ │ ├── ce.py │ │ │ ├── combined.py │ │ │ ├── deep_sup.py │ │ │ ├── dice.py │ │ │ ├── exp_log.py │ │ │ ├── gatedcrf.py │ │ │ ├── mse.py │ │ │ ├── mumford_shah.py │ │ │ ├── slsr.py │ │ │ ├── ssl.py │ │ │ └── util.py │ ├── net │ │ ├── __init__.py │ │ ├── cls │ │ │ ├── __init__.py │ │ │ └── torch_pretrained_net.py │ │ ├── net3d │ │ │ ├── __init__.py │ │ │ ├── scse3d.py │ │ │ ├── unet2d5.py │ │ │ ├── unet2d5_dsbn.py │ │ │ ├── unet3d.py │ │ │ └── unet3d_scse.py │ │ ├── net_dict_cls.py │ │ └── net_dict_seg.py │ ├── net_run │ │ ├── __init__.py │ │ ├── agent_abstract.py │ │ ├── agent_cls.py │ │ ├── agent_seg.py │ │ ├── get_optimizer.py │ │ ├── infer_func.py │ │ └── net_run.py │ ├── net_run_dsbn │ │ ├── __init__.py │ │ ├── agent_abstract.py │ │ ├── agent_cls.py │ │ ├── agent_seg.py │ │ ├── dsbn.py │ │ ├── get_optimizer.py │ │ ├── infer_func.py │ │ └── net_run.py │ ├── net_run_nll │ │ ├── __init__.py │ │ ├── nll_clslsr.py │ │ ├── nll_co_teaching.py │ │ ├── nll_dast.py │ │ ├── nll_main.py │ │ └── nll_trinet.py │ ├── net_run_ssl │ │ ├── __init__.py │ │ ├── ssl_abstract.py │ │ ├── ssl_cct.py │ │ ├── ssl_cps.py │ │ ├── ssl_em.py │ │ ├── ssl_main.py │ │ ├── ssl_mt.py │ │ ├── ssl_uamt.py │ │ └── ssl_urpc.py │ ├── net_run_wsl │ │ ├── __init__.py │ │ ├── wsl_abstract.py │ │ ├── wsl_dmpls.py │ │ ├── wsl_em.py │ │ ├── wsl_gatedcrf.py │ │ ├── wsl_main.py │ │ ├── wsl_mumford_shah.py │ │ ├── wsl_tv.py │ │ └── wsl_ustm.py │ ├── transform │ │ ├── __init__.py │ │ ├── abstract_transform.py │ │ ├── crop.py │ │ ├── flip.py │ │ ├── intensity.py │ │ ├── label_convert.py │ │ ├── normalize.py │ │ ├── pad.py │ │ ├── rescale.py │ │ ├── rotate.py │ │ ├── threshold.py │ │ └── trans_dict.py │ └── util │ │ ├── __init__.py │ │ ├── evaluation_cls.py │ │ ├── evaluation_seg.py │ │ ├── evaluation_seg_train.py │ │ ├── general.py │ │ ├── image_process.py │ │ ├── make_noise.py │ │ ├── model_operate.py │ │ ├── parse_config.py │ │ ├── post_process.py │ │ ├── preprocess.py │ │ └── ramps.py ├── pyproject.toml ├── requirements.txt └── setup.py ├── README.md ├── __init__.py ├── config_dual ├── data_vs │ ├── test_hrT2.csv │ ├── train_ceT1.csv │ ├── train_ceT1_like.csv │ ├── train_hrT2-ceT1_cyc.csv │ ├── train_hrT2.csv │ ├── train_hrT2_like.csv │ ├── train_hrT2_pair.csv │ ├── train_vs_t1s_wi+wp.csv │ ├── valid_hrT2.csv │ ├── vs_t1s_S.cfg │ ├── vs_t1s_g.cfg │ ├── vs_t1s_g_fake.cfg │ └── vs_t1s_weights.cfg └── evaluation.cfg ├── data ├── get image_weight.py ├── get_pixel_weight.py ├── preprocess_bst.py ├── preprocess_mmwhs.py ├── preprocess_vs.py └── write_csv.py ├── dataset ├── ceT1_train │ ├── img │ │ └── vs_gk_99_t1.nii.gz │ └── lab │ │ └── vs_gk_99_t1.nii.gz ├── fake_data │ ├── ceT1-hrT2-ceT1_ac │ │ └── vs_gk_99_t1.nii.gz │ ├── ceT1-hrT2-ceT1_cc │ │ └── vs_gk_99_t1.nii.gz │ ├── ceT1-hrT2_auxcyc │ │ └── vs_gk_99_t1.nii.gz │ ├── ceT1-hrT2_cyc │ │ └── vs_gk_99_t1.nii.gz │ └── hrT2-ceT1_train_cyc │ │ └── vs_gk_98_t2.nii.gz ├── hrT2_test │ ├── vs_gk_9_t2.nii.gz │ └── vs_gk_9_t2_seg.nii.gz ├── hrT2_train │ ├── img │ │ └── vs_gk_98_t2.nii.gz │ └── lab │ │ └── vs_gk_98_t2.nii.gz ├── hrT2_valid │ ├── vs_gk_95_t2.nii.gz │ └── vs_gk_95_t2_seg.nii.gz └── weight │ └── cyc121_vst1s-gan.npy ├── docs └── image_info.odt ├── merge_pixelw.py └── run.sh /FPL-plus.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/FPL-plus/HEAD/FPL-plus.png -------------------------------------------------------------------------------- /PyMIC/.gitignore: -------------------------------------------------------------------------------- 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