├── .gitignore ├── LICENSE ├── README.md ├── config ├── data │ ├── data_test.csv │ ├── data_train.csv │ ├── eval_gt_seg.csv │ ├── fold1_train.csv │ ├── fold1_valid.csv │ ├── fold2_train.csv │ ├── fold2_valid.csv │ ├── fold3_train.csv │ ├── fold3_valid.csv │ ├── fold4_train.csv │ ├── fold4_valid.csv │ ├── fold5_train.csv │ └── fold5_valid.csv ├── evaluation.cfg ├── test.cfg └── train_val.cfg ├── create_dataset_json.py ├── crop_for_coarse_stage.py ├── crop_for_fine_stage.py ├── get_final_test.py ├── myops_run.py ├── myops_test.py ├── path_config.py ├── picture └── method.png ├── postprocess.py ├── requirements.txt └── write_csv_files.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/README.md -------------------------------------------------------------------------------- /config/data/data_test.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/data/data_test.csv -------------------------------------------------------------------------------- /config/data/data_train.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/data/data_train.csv -------------------------------------------------------------------------------- /config/data/eval_gt_seg.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/data/eval_gt_seg.csv -------------------------------------------------------------------------------- /config/data/fold1_train.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/data/fold1_train.csv -------------------------------------------------------------------------------- /config/data/fold1_valid.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/data/fold1_valid.csv -------------------------------------------------------------------------------- /config/data/fold2_train.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/data/fold2_train.csv -------------------------------------------------------------------------------- /config/data/fold2_valid.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/data/fold2_valid.csv -------------------------------------------------------------------------------- /config/data/fold3_train.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/data/fold3_train.csv -------------------------------------------------------------------------------- /config/data/fold3_valid.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/data/fold3_valid.csv -------------------------------------------------------------------------------- /config/data/fold4_train.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/data/fold4_train.csv -------------------------------------------------------------------------------- /config/data/fold4_valid.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/data/fold4_valid.csv -------------------------------------------------------------------------------- /config/data/fold5_train.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/data/fold5_train.csv -------------------------------------------------------------------------------- /config/data/fold5_valid.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/data/fold5_valid.csv -------------------------------------------------------------------------------- /config/evaluation.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/evaluation.cfg -------------------------------------------------------------------------------- /config/test.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/test.cfg -------------------------------------------------------------------------------- /config/train_val.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/config/train_val.cfg -------------------------------------------------------------------------------- /create_dataset_json.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/create_dataset_json.py -------------------------------------------------------------------------------- /crop_for_coarse_stage.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/crop_for_coarse_stage.py -------------------------------------------------------------------------------- /crop_for_fine_stage.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/crop_for_fine_stage.py -------------------------------------------------------------------------------- /get_final_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/get_final_test.py -------------------------------------------------------------------------------- /myops_run.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/myops_run.py -------------------------------------------------------------------------------- /myops_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/myops_test.py -------------------------------------------------------------------------------- /path_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/path_config.py -------------------------------------------------------------------------------- /picture/method.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/picture/method.png -------------------------------------------------------------------------------- /postprocess.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/postprocess.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/requirements.txt -------------------------------------------------------------------------------- /write_csv_files.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/MyoPS2020/HEAD/write_csv_files.py --------------------------------------------------------------------------------