├── .gitignore ├── LICENSE ├── README.md ├── docs ├── .debug.yml ├── Documentation │ └── README.md ├── Gemfile ├── Makefile ├── README.md ├── _config.yml ├── history.txt ├── index.md ├── make.bat └── source │ ├── api.rst │ ├── conf.py │ ├── index.rst │ ├── installation.rst │ ├── modules.rst │ ├── pymic.io.rst │ ├── pymic.layer.rst │ ├── pymic.loss.cls.rst │ ├── pymic.loss.rst │ ├── pymic.loss.seg.rst │ ├── pymic.net.cls.rst │ ├── pymic.net.net2d.rst │ ├── pymic.net.net3d.rst │ ├── pymic.net.rst │ ├── pymic.net_run.noisy_label.rst │ ├── pymic.net_run.rst │ ├── pymic.net_run.self_sup.rst │ ├── pymic.net_run.semi_sup.rst │ ├── pymic.net_run.weak_sup.rst │ ├── pymic.rst │ ├── pymic.transform.rst │ ├── pymic.util.rst │ ├── setup.rst │ ├── usage.fsl.rst │ ├── usage.nll.rst │ ├── usage.quickstart.rst │ ├── usage.rst │ ├── usage.ssl.rst │ └── usage.wsl.rst ├── pymic ├── __init__.py ├── io │ ├── __init__.py │ ├── h5_dataset.py │ ├── image_read_write.py │ └── nifty_dataset.py ├── layer │ ├── __init__.py │ ├── activation.py │ ├── convolution.py │ ├── deconvolution.py │ └── space2channel.py ├── loss │ ├── __init__.py │ ├── cls │ │ ├── __init__.py │ │ ├── basic.py │ │ ├── infoNCE.py │ │ └── util.py │ ├── loss_dict_cls.py │ ├── loss_dict_seg.py │ └── seg │ │ ├── __init__.py │ │ ├── abstract.py │ │ ├── ars_tversky.py │ │ ├── ce.py │ │ ├── combined.py │ │ ├── deep_sup.py │ │ ├── dice.py │ │ ├── exp_log.py │ │ ├── gatedcrf.py │ │ ├── mse.py │ │ ├── mumford_shah.py │ │ ├── slsr.py │ │ ├── ssl.py │ │ └── util.py ├── net │ ├── __init__.py │ ├── cls │ │ ├── __init__.py │ │ └── torch_pretrained_net.py │ ├── multi_net.py │ ├── net2d │ │ ├── __init__.py │ │ ├── cople_net.py │ │ ├── scse2d.py │ │ ├── trans2d │ │ │ ├── __init__.py │ │ │ ├── swinunet.py │ │ │ ├── swinunet_sys.py │ │ │ ├── transunet.py │ │ │ ├── transunet_cfg.py │ │ │ └── transunet_resnet.py │ │ ├── umamba.py │ │ ├── unet2d.py │ │ ├── unet2d_attention.py │ │ ├── unet2d_canet.py │ │ ├── unet2d_cct.py │ │ ├── unet2d_dual_branch.py │ │ ├── unet2d_mcnet.py │ │ ├── unet2d_multi_decoder.py │ │ ├── unet2d_pp.py │ │ ├── unet2d_scse.py │ │ ├── unet2d_vm.py │ │ └── unet2d_vm_light.py │ ├── net3d │ │ ├── __init__.py │ │ ├── fmunet.py │ │ ├── fmunetv3.py │ │ ├── grunet.py │ │ ├── lcovnet.py │ │ ├── scse3d.py │ │ ├── trans3d │ │ │ ├── __init__.py │ │ │ └── transunet3d.py │ │ ├── unet2d5.py │ │ ├── unet3d.py │ │ ├── unet3d_dual_branch.py │ │ └── unet3d_scse.py │ ├── net_dict_cls.py │ ├── net_dict_seg.py │ └── net_init.py ├── net_run │ ├── __init__.py │ ├── agent_abstract.py │ ├── agent_cls.py │ ├── agent_preprocess.py │ ├── agent_rec.py │ ├── agent_seg.py │ ├── get_optimizer.py │ ├── infer_func.py │ ├── noisy_label │ │ ├── __init__.py │ │ ├── nll_clslsr.py │ │ ├── nll_co_teaching.py │ │ ├── nll_dast.py │ │ └── nll_trinet.py │ ├── predict.py │ ├── preprocess.py │ ├── self_sup │ │ ├── __init__.py │ │ ├── self_genesis.py │ │ ├── self_patch_swapping.py │ │ ├── self_sl_agent.py │ │ ├── self_volf.py │ │ ├── self_vox2vec.py │ │ └── util.py │ ├── semi_sup │ │ ├── __init__.py │ │ ├── ssl_abstract.py │ │ ├── ssl_cct.py │ │ ├── ssl_cps.py │ │ ├── ssl_em.py │ │ ├── ssl_mcnet.py │ │ ├── ssl_mt.py │ │ ├── ssl_uamt.py │ │ └── ssl_urpc.py │ ├── train.py │ └── weak_sup │ │ ├── __init__.py │ │ ├── wsl_abstract.py │ │ ├── wsl_dmpls.py │ │ ├── wsl_dmsps.py │ │ ├── wsl_em.py │ │ ├── wsl_gatedcrf.py │ │ ├── wsl_mumford_shah.py │ │ ├── wsl_tv.py │ │ └── wsl_ustm.py ├── test │ ├── all_scalars.json │ ├── mnist │ │ ├── processed │ │ │ ├── test.pt │ │ │ └── training.pt │ │ └── raw │ │ │ ├── t10k-images-idx3-ubyte │ │ │ ├── t10k-labels-idx1-ubyte │ │ │ ├── train-images-idx3-ubyte │ │ │ └── train-labels-idx1-ubyte │ ├── runs │ │ └── Feb19_16-56-35_uestc-MW50-SV0 │ │ │ ├── 00000 │ │ │ └── default │ │ │ │ ├── metadata.tsv │ │ │ │ ├── sprite.png │ │ │ │ └── tensors.tsv │ │ │ ├── 00001 │ │ │ └── noMetadata │ │ │ │ └── tensors.tsv │ │ │ ├── 00002 │ │ │ └── default │ │ │ │ ├── metadata.tsv │ │ │ │ ├── sprite.png │ │ │ │ └── tensors.tsv │ │ │ ├── data │ │ │ └── scalar_group │ │ │ │ ├── arctanx │ │ │ │ └── events.out.tfevents.1550566595.uestc-MW50-SV0 │ │ │ │ ├── xcosx │ │ │ │ └── events.out.tfevents.1550566595.uestc-MW50-SV0 │ │ │ │ └── xsinx │ │ │ │ └── events.out.tfevents.1550566595.uestc-MW50-SV0 │ │ │ ├── events.out.tfevents.1550566595.uestc-MW50-SV0 │ │ │ └── projector_config.pbtxt │ ├── test_assd.py │ ├── test_net2d.py │ ├── test_net3d.py │ ├── test_nifty_dataset.py │ └── test_tensorboard.py ├── transform │ ├── __init__.py │ ├── abstract_transform.py │ ├── affine.py │ ├── crop.py │ ├── crop4dino.py │ ├── crop4vf.py │ ├── crop4voco.py │ ├── crop4vox2vec.py │ ├── extract_channel.py │ ├── flip.py │ ├── intensity.py │ ├── label_convert.py │ ├── mix.py │ ├── normalize.py │ ├── pad.py │ ├── rescale.py │ ├── rotate.py │ ├── threshold.py │ ├── trans_dict.py │ └── transpose.py └── util │ ├── __init__.py │ ├── evaluation_cls.py │ ├── evaluation_seg.py │ ├── general.py │ ├── image_process.py │ ├── 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