├── .gitignore ├── Ensemble_seg.py ├── README.md ├── Segmentation.py ├── Uncertainty.py ├── config ├── subtest_0.txt ├── subtest_1.txt ├── subtest_2.txt ├── subtest_3.txt ├── subtest_4.txt ├── subtest_5.txt └── train.txt ├── data_process ├── Preprocess.py ├── __init__.py ├── data_process_func.py ├── label_transfer.py └── transform.py ├── error_rate.py ├── fig ├── 1 └── summary.jpg ├── models ├── ._data_loader.py ├── ._data_process.py ├── LYC_data_loader.py ├── Struseg_dataset.py ├── Unet.py ├── Unet_Separate_3.py ├── layers.py ├── loss_function.py └── module.py ├── seg_img.py ├── train.py ├── util ├── ._.DS_Store ├── ._assd_evaluation.py ├── ._dice_evaluation.py ├── ._pre_process.py ├── ._train_test_func.py ├── ._visualize.py ├── Label_exist.py ├── assd_evaluation.py ├── binary.py ├── collect_organism_hist.py ├── data_augament.py ├── dice_evaluation.py ├── dump_data.py ├── grid_normal.py ├── make_3d_ground_truth_only.py ├── parse_config.py ├── pre_function.py ├── pre_process.py ├── train_test_func.py └── visualization │ ├── 3.py │ ├── evalution.py │ ├── show_Distance.py │ ├── show_Label_contours.py │ ├── show_boxplot.py │ ├── show_multi_hist.py │ ├── show_param.py │ └── visualize_loss.py └── weights_center_crop ├── multi_thresh_1 └── readme ├── multi_thresh_2 └── readme └── multi_thresh_3 └── readme /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/SepNet/HEAD/.gitignore -------------------------------------------------------------------------------- /Ensemble_seg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/SepNet/HEAD/Ensemble_seg.py -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HiLab-git/SepNet/HEAD/README.md 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