├── .github └── workflows │ └── rust.yml ├── .gitignore ├── Cargo.lock ├── Cargo.toml ├── README.md ├── input ├── ref.fa ├── sampleOutputpath3.vcf └── samplePath3.gfa └── src ├── bubble_detection.rs ├── file_io.rs ├── main.rs └── variant_identification.rs /.github/workflows/rust.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HopedWall/rs-gfatovcf/HEAD/.github/workflows/rust.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | /input 2 | /target 3 | .idea 4 | -------------------------------------------------------------------------------- /Cargo.lock: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HopedWall/rs-gfatovcf/HEAD/Cargo.lock -------------------------------------------------------------------------------- /Cargo.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HopedWall/rs-gfatovcf/HEAD/Cargo.toml -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HopedWall/rs-gfatovcf/HEAD/README.md -------------------------------------------------------------------------------- /input/ref.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HopedWall/rs-gfatovcf/HEAD/input/ref.fa -------------------------------------------------------------------------------- /input/sampleOutputpath3.vcf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HopedWall/rs-gfatovcf/HEAD/input/sampleOutputpath3.vcf -------------------------------------------------------------------------------- /input/samplePath3.gfa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HopedWall/rs-gfatovcf/HEAD/input/samplePath3.gfa -------------------------------------------------------------------------------- /src/bubble_detection.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HopedWall/rs-gfatovcf/HEAD/src/bubble_detection.rs -------------------------------------------------------------------------------- /src/file_io.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HopedWall/rs-gfatovcf/HEAD/src/file_io.rs -------------------------------------------------------------------------------- /src/main.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HopedWall/rs-gfatovcf/HEAD/src/main.rs -------------------------------------------------------------------------------- /src/variant_identification.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HopedWall/rs-gfatovcf/HEAD/src/variant_identification.rs --------------------------------------------------------------------------------