├── .gitignore ├── LICENSE ├── README.md ├── datasets ├── __init__.py └── data3dunet.py ├── losses ├── __init__.py └── losses.py ├── models ├── RPLFUnet.py └── __init__.py ├── requirements.txt ├── resources ├── Fig1.png ├── Fig2.png ├── Fig3.png ├── Fig4.png ├── Fig5.png ├── Fig6.png ├── Fig7.png ├── Fig8.png ├── __init__.py ├── config.py └── train_config.yaml ├── train.py └── trainer ├── trainerunet3d.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/README.md -------------------------------------------------------------------------------- /datasets/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /datasets/data3dunet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/datasets/data3dunet.py -------------------------------------------------------------------------------- /losses/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /losses/losses.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/losses/losses.py -------------------------------------------------------------------------------- /models/RPLFUnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/models/RPLFUnet.py -------------------------------------------------------------------------------- /models/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- 1 | natsort 2 | opencv-python 3 | pyyaml -------------------------------------------------------------------------------- /resources/Fig1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/resources/Fig1.png -------------------------------------------------------------------------------- /resources/Fig2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/resources/Fig2.png -------------------------------------------------------------------------------- /resources/Fig3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/resources/Fig3.png -------------------------------------------------------------------------------- /resources/Fig4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/resources/Fig4.png -------------------------------------------------------------------------------- /resources/Fig5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/resources/Fig5.png -------------------------------------------------------------------------------- /resources/Fig6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/resources/Fig6.png -------------------------------------------------------------------------------- /resources/Fig7.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/resources/Fig7.png -------------------------------------------------------------------------------- /resources/Fig8.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/resources/Fig8.png -------------------------------------------------------------------------------- /resources/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /resources/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/resources/config.py -------------------------------------------------------------------------------- /resources/train_config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/resources/train_config.yaml -------------------------------------------------------------------------------- /train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/train.py -------------------------------------------------------------------------------- /trainer/trainerunet3d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/trainer/trainerunet3d.py -------------------------------------------------------------------------------- /trainer/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuHaigen/COVID-19-Lung-Infection-Segmentation/HEAD/trainer/utils.py --------------------------------------------------------------------------------